Package de.julielab.jules.ae.genemapping

Class AhoCorasickLongestMatchCallback

java.lang.Object

de.julielab.jules.ae.genemapping.AhoCorasickLongestMatchCallback

All Implemented Interfaces:

AhoCorasickOptimized.MatchCallback

public class AhoCorasickLongestMatchCallback
extends java.lang.Object
implements AhoCorasickOptimized.MatchCallback

To be used with an instance of AhoCorasickOptimized. Collects all matches made by AhoCorasickOptimized.match(String, MatchCallback) but only keeps the longest match in case of overlapping matches.

Constructor Summary

Constructors

Constructor	Description
AhoCorasickLongestMatchCallback()

Method Summary

Modifier and Type	Method	Description
void	clear()
java.util.TreeMap<org.apache.commons.lang3.Range<java.lang.Integer>,java.lang.String>	getLongestMatches()
void	onMatch(int startPosition, int endPosition, java.lang.String matched)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AhoCorasickLongestMatchCallback

public AhoCorasickLongestMatchCallback()

Method Detail

onMatch

public void onMatch(int startPosition,
                    int endPosition,
                    java.lang.String matched)

Specified by:

onMatch in interface AhoCorasickOptimized.MatchCallback

getLongestMatches

public java.util.TreeMap<org.apache.commons.lang3.Range<java.lang.Integer>,java.lang.String> getLongestMatches()

clear

public void clear()