Package de.julielab.jcore.ae.genemapper.desc.ProteinOffsetExpansion

Class SpecifiedMoleculeType

  • All Implemented Interfaces:
    Cloneable, org.apache.uima.cas.AnnotationBaseFS, org.apache.uima.cas.FeatureStructure, org.apache.uima.cas.text.AnnotationFS
    public class SpecifiedMoleculeType
extends org.apache.uima.jcas.tcas.Annotation
    Type defined in de.julielab.jcore.ae.genemapper.desc.ProteinOffsetExpansion Updated by JCasGen Sat Dec 03 19:46:40 CET 2022 XML source: /Users/faessler/Coding/git/jcore-gene-mapper-ae/gene-id-mapper/target/jcasgen/typesystem.xml

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static int type  
      static int typeIndexID  

      • Fields inherited from class org.apache.uima.jcas.cas.TOP

        addr, jcasType

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      int getTypeIndexID()  

      • Methods inherited from class org.apache.uima.jcas.tcas.Annotation

        getBegin, getCoveredText, getEnd, getStart, setBegin, setEnd

      • Methods inherited from class org.apache.uima.jcas.cas.AnnotationBase

        getSofa, getView

      • Methods inherited from class org.apache.uima.jcas.cas.TOP

        addToIndexes, addToIndexes, equals, getAddress, getCAS, getCASImpl, getLowLevelCas, hashCode, removeFromIndexes, removeFromIndexes

      • Methods inherited from class org.apache.uima.cas.impl.FeatureStructureImpl

        clone, getavoidcollisionTypeCode, getBooleanValue, getByteValue, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, prettyPrint, prettyPrint, prettyPrint, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue, toString, toString

      • Methods inherited from interface org.apache.uima.cas.AnnotationBaseFS

        getView

      • Methods inherited from interface org.apache.uima.cas.FeatureStructure

        clone, equals, getBooleanValue, getByteValue, getCAS, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, hashCode, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue

    • Field Detail

      • typeIndexID

        public static final int typeIndexID

      • type

        public static final int type

    • Constructor Detail

      • SpecifiedMoleculeType

        protected SpecifiedMoleculeType()
        Never called. Disable default constructor

      • SpecifiedMoleculeType

        public SpecifiedMoleculeType​(int addr,
                             org.apache.uima.jcas.cas.TOP_Type type)
        Internal - constructor used by generator
        Parameters:
        addr - low level Feature Structure reference
        type - the type of this Feature Structure

      • SpecifiedMoleculeType

        public SpecifiedMoleculeType​(org.apache.uima.jcas.JCas jcas)
        Parameters:
        jcas - JCas to which this Feature Structure belongs

      • SpecifiedMoleculeType

        public SpecifiedMoleculeType​(org.apache.uima.jcas.JCas jcas,
                             int begin,
                             int end)
        Parameters:
        jcas - JCas to which this Feature Structure belongs
        begin - offset to the begin spot in the SofA
        end - offset to the end spot in the SofA

    • Method Detail

      • getTypeIndexID

        public int getTypeIndexID()
        Overrides:
        getTypeIndexID in class org.apache.uima.jcas.tcas.Annotation
        Returns:
        index of the type