Package de.julielab.jcore.ae.genemapper.desc.ProteinOffsetExpansion

Class ProteinModifier

  • All Implemented Interfaces:
    Cloneable, org.apache.uima.cas.AnnotationBaseFS, org.apache.uima.cas.FeatureStructure, org.apache.uima.cas.text.AnnotationFS
    public class ProteinModifier
extends org.apache.uima.jcas.tcas.Annotation
    Type defined in de.julielab.jcore.ae.genemapper.desc.ProteinOffsetExpansion Updated by JCasGen Sat Dec 03 19:46:40 CET 2022 XML source: /Users/faessler/Coding/git/jcore-gene-mapper-ae/gene-id-mapper/target/jcasgen/typesystem.xml

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static int type  
      static int typeIndexID  

      • Fields inherited from class org.apache.uima.jcas.cas.TOP

        addr, jcasType

    • Constructor Summary

      Constructors 
      Modifier Constructor Description
      protected ProteinModifier()
      Never called.
        ProteinModifier​(int addr, org.apache.uima.jcas.cas.TOP_Type type)
      Internal - constructor used by generator
        ProteinModifier​(org.apache.uima.jcas.JCas jcas)  
        ProteinModifier​(org.apache.uima.jcas.JCas jcas, int begin, int end)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      int getTypeIndexID()  

      • Methods inherited from class org.apache.uima.jcas.tcas.Annotation

        getBegin, getCoveredText, getEnd, getStart, setBegin, setEnd

      • Methods inherited from class org.apache.uima.jcas.cas.AnnotationBase

        getSofa, getView

      • Methods inherited from class org.apache.uima.jcas.cas.TOP

        addToIndexes, addToIndexes, equals, getAddress, getCAS, getCASImpl, getLowLevelCas, hashCode, removeFromIndexes, removeFromIndexes

      • Methods inherited from class org.apache.uima.cas.impl.FeatureStructureImpl

        clone, getavoidcollisionTypeCode, getBooleanValue, getByteValue, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, prettyPrint, prettyPrint, prettyPrint, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue, toString, toString

      • Methods inherited from interface org.apache.uima.cas.AnnotationBaseFS

        getView

      • Methods inherited from interface org.apache.uima.cas.FeatureStructure

        clone, equals, getBooleanValue, getByteValue, getCAS, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, hashCode, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue

    • Field Detail

      • typeIndexID

        public static final int typeIndexID

      • type

        public static final int type

    • Constructor Detail

      • ProteinModifier

        protected ProteinModifier()
        Never called. Disable default constructor

      • ProteinModifier

        public ProteinModifier​(int addr,
                       org.apache.uima.jcas.cas.TOP_Type type)
        Internal - constructor used by generator
        Parameters:
        addr - low level Feature Structure reference
        type - the type of this Feature Structure

      • ProteinModifier

        public ProteinModifier​(org.apache.uima.jcas.JCas jcas)
        Parameters:
        jcas - JCas to which this Feature Structure belongs

      • ProteinModifier

        public ProteinModifier​(org.apache.uima.jcas.JCas jcas,
                       int begin,
                       int end)
        Parameters:
        jcas - JCas to which this Feature Structure belongs
        begin - offset to the begin spot in the SofA
        end - offset to the end spot in the SofA

    • Method Detail

      • getTypeIndexID

        public int getTypeIndexID()
        Overrides:
        getTypeIndexID in class org.apache.uima.jcas.tcas.Annotation
        Returns:
        index of the type