Package de.julielab.jcore.ae.genemapper.desc.FamilyResolution

Class FamilyAcronym

  • All Implemented Interfaces:
    Cloneable, org.apache.uima.cas.AnnotationBaseFS, org.apache.uima.cas.FeatureStructure, org.apache.uima.cas.text.AnnotationFS
    public class FamilyAcronym
extends org.apache.uima.jcas.tcas.Annotation
    Type defined in de.julielab.jcore.ae.genemapper.desc.FamilyResolution Updated by JCasGen Sat Dec 03 19:46:40 CET 2022 XML source: /Users/faessler/Coding/git/jcore-gene-mapper-ae/gene-id-mapper/target/jcasgen/typesystem.xml

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static int type  
      static int typeIndexID  

      • Fields inherited from class org.apache.uima.jcas.cas.TOP

        addr, jcasType

    • Constructor Summary

      Constructors 
      Modifier Constructor Description
      protected FamilyAcronym()
      Never called.
        FamilyAcronym​(int addr, org.apache.uima.jcas.cas.TOP_Type type)
      Internal - constructor used by generator
        FamilyAcronym​(org.apache.uima.jcas.JCas jcas)  
        FamilyAcronym​(org.apache.uima.jcas.JCas jcas, int begin, int end)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      String getGeneId()
      getter for geneId - gets geneId
      Family getLongform()
      getter for longform - gets longform
      int getTypeIndexID()  
      void setGeneId​(String v)
      setter for geneId - sets geneId
      void setLongform​(Family v)
      setter for longform - sets longform

      • Methods inherited from class org.apache.uima.jcas.tcas.Annotation

        getBegin, getCoveredText, getEnd, getStart, setBegin, setEnd

      • Methods inherited from class org.apache.uima.jcas.cas.AnnotationBase

        getSofa, getView

      • Methods inherited from class org.apache.uima.jcas.cas.TOP

        addToIndexes, addToIndexes, equals, getAddress, getCAS, getCASImpl, getLowLevelCas, hashCode, removeFromIndexes, removeFromIndexes

      • Methods inherited from class org.apache.uima.cas.impl.FeatureStructureImpl

        clone, getavoidcollisionTypeCode, getBooleanValue, getByteValue, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, prettyPrint, prettyPrint, prettyPrint, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue, toString, toString

      • Methods inherited from interface org.apache.uima.cas.AnnotationBaseFS

        getView

      • Methods inherited from interface org.apache.uima.cas.FeatureStructure

        clone, equals, getBooleanValue, getByteValue, getCAS, getDoubleValue, getFeatureValue, getFeatureValueAsString, getFloatValue, getIntValue, getLongValue, getShortValue, getStringValue, getType, hashCode, setBooleanValue, setByteValue, setDoubleValue, setFeatureValue, setFeatureValueFromString, setFloatValue, setIntValue, setLongValue, setShortValue, setStringValue

    • Field Detail

      • typeIndexID

        public static final int typeIndexID

      • type

        public static final int type

    • Constructor Detail

      • FamilyAcronym

        protected FamilyAcronym()
        Never called. Disable default constructor

      • FamilyAcronym

        public FamilyAcronym​(int addr,
                     org.apache.uima.jcas.cas.TOP_Type type)
        Internal - constructor used by generator
        Parameters:
        addr - low level Feature Structure reference
        type - the type of this Feature Structure

      • FamilyAcronym

        public FamilyAcronym​(org.apache.uima.jcas.JCas jcas)
        Parameters:
        jcas - JCas to which this Feature Structure belongs

      • FamilyAcronym

        public FamilyAcronym​(org.apache.uima.jcas.JCas jcas,
                     int begin,
                     int end)
        Parameters:
        jcas - JCas to which this Feature Structure belongs
        begin - offset to the begin spot in the SofA
        end - offset to the end spot in the SofA

    • Method Detail

      • getTypeIndexID

        public int getTypeIndexID()
        Overrides:
        getTypeIndexID in class org.apache.uima.jcas.tcas.Annotation
        Returns:
        index of the type

      • getGeneId

        public String getGeneId()
        getter for geneId - gets geneId
        Returns:
        value of the feature

      • setGeneId

        public void setGeneId​(String v)
        setter for geneId - sets geneId
        Parameters:
        v - value to set into the feature

      • getLongform

        public Family getLongform()
        getter for longform - gets longform
        Returns:
        value of the feature

      • setLongform

        public void setLongform​(Family v)
        setter for longform - sets longform
        Parameters:
        v - value to set into the feature