Package de.julielab.genemapper.mappingcores

Class QuercusCandidateSetter

java.lang.Object

de.julielab.genemapper.mappingcores.QuercusCandidateSetter

public class QuercusCandidateSetter
extends Object

Constructor Summary

Constructors

Constructor	Description
QuercusCandidateSetter(NameCentricRetrieval nameCentricRetrieval, CandidateRetrieval geneRecordCandidateRetrieval)

Method Summary

Modifier and Type	Method	Description
void	setCandidates(de.julielab.geneexpbase.genemodel.GeneDocument document)
void	setCandidatesToGoldMentions(de.julielab.geneexpbase.genemodel.GeneDocument document)	Set candidates to the gold mentions; the only purpose is to determine whether there exists an exact database match for it or not.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QuercusCandidateSetter

@Inject
public QuercusCandidateSetter(NameCentricRetrieval nameCentricRetrieval,
                              CandidateRetrieval geneRecordCandidateRetrieval)

Method Detail

setCandidates

public void setCandidates(de.julielab.geneexpbase.genemodel.GeneDocument document)

setCandidatesToGoldMentions

public void setCandidatesToGoldMentions(de.julielab.geneexpbase.genemodel.GeneDocument document)

Set candidates to the gold mentions; the only purpose is to determine whether there exists an exact database match for it or not. This information is used for detailed evaluation metrics on exact and approximate matches.

Parameters:

document -