Package de.julielab.genemapper.mappingcores

Interface MappingCore

All Known Implementing Classes:

DypsisMappingCore, QuercusMappingCore

public interface MappingCore

Method Summary

Modifier and Type	Method	Description
void	clear()
CandidateRetrieval	getCandidateRetrieval()
ContextRanker	getContextualRanking()
de.julielab.geneexpbase.TermNormalizer	getTermNormalizer()
de.julielab.geneexpbase.genemodel.DocumentMappingResult	map(de.julielab.geneexpbase.genemodel.GeneDocument document)
de.julielab.geneexpbase.genemodel.DocumentMappingResult	map(de.julielab.geneexpbase.genemodel.GeneDocument document, de.julielab.geneexpbase.configuration.Parameters parameterMap, Stats stats)
de.julielab.geneexpbase.genemodel.MentionMappingResult	map(de.julielab.geneexpbase.genemodel.GeneMention geneMention)
void	shutdown()	Indicates that the mapping process has finished and all held resources should be freed.

Method Detail

map

de.julielab.geneexpbase.genemodel.MentionMappingResult map(de.julielab.geneexpbase.genemodel.GeneMention geneMention)
                                                    throws GeneMapperException

Throws:

GeneMapperException

getContextualRanking

ContextRanker getContextualRanking()

getCandidateRetrieval

CandidateRetrieval getCandidateRetrieval()

getTermNormalizer

de.julielab.geneexpbase.TermNormalizer getTermNormalizer()

map

de.julielab.geneexpbase.genemodel.DocumentMappingResult map(de.julielab.geneexpbase.genemodel.GeneDocument document)
                                                     throws GeneMapperException

Throws:

GeneMapperException

map

de.julielab.geneexpbase.genemodel.DocumentMappingResult map(de.julielab.geneexpbase.genemodel.GeneDocument document,
                                                            de.julielab.geneexpbase.configuration.Parameters parameterMap,
                                                            Stats stats)
                                                     throws GeneMapperException

Throws:

GeneMapperException

shutdown

void shutdown()
       throws GeneMapperException

Indicates that the mapping process has finished and all held resources should be freed.

Throws:

GeneMapperException

clear

void clear()