Package de.julielab.genemapper.hpo

Class CandidateRetrievalOptimizationRoute

java.lang.Object

de.julielab.geneexpbase.hpo.HpoRoute

de.julielab.genemapper.hpo.CandidateRetrievalOptimizationRoute

All Implemented Interfaces:

Serializable, spark.Route

Direct Known Subclasses:

GNormPlusBC2TestRoute

public class CandidateRetrievalOptimizationRoute
extends de.julielab.geneexpbase.hpo.HpoRoute

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class de.julielab.geneexpbase.hpo.HpoRoute

de.julielab.geneexpbase.hpo.HpoRoute.Metric

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	EVAL_ON_HUMAN_ONLY
static String	GET_MENTION_SEARCH_SCORE

Fields inherited from class de.julielab.geneexpbase.hpo.HpoRoute

configuration, injector, KNOWN_ML_ALGORITHMS, loadedCorpora, runCounter

Constructor Summary

Constructors

Constructor	Description
CandidateRetrievalOptimizationRoute(Configuration configuration)

Method Summary

Modifier and Type	Method	Description
String	calculateScore(de.julielab.geneexpbase.hpo.HpoInstance si, de.julielab.geneexpbase.configuration.Parameters parameterMap, int seed, int cutoffTime, int resourceBudget, int maxResourceBudget, de.julielab.geneexpbase.hpo.HpoRoute.Metric returnMetric, int runId)
protected com.google.inject.Injector	createGuiceInjector(de.julielab.geneexpbase.configuration.Configuration configuration)
protected List<de.julielab.geneexpbase.hpo.HpoInstance>	getActiveCorpora()
protected de.julielab.geneexpbase.hpo.HpoRoute.Metric	getDefaultMetric()
int	getDevSamplingFrequency()
int	getNumSplits()
String	getRouteEndpoint()
protected String	getTaskName()

Methods inherited from class de.julielab.geneexpbase.hpo.HpoRoute

getAllCorporaTrainingDocuments4Instance, getCorpusPartition, getCorpusSplitByType, getDocuments4Budget, getDocuments4Budget4Instance, getDocuments4Instance, getDocuments4Instance, getMachineLearningPrefixes, getResultScalingFactors, getSplitMappingFile, getTrainDevSplit, getTrainingData, getTrainingData4Budget4Instance, handle, loadData, loadDataSplits, parseInstanceName, parseParameters, saveDataSplit, train

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GET_MENTION_SEARCH_SCORE

public static final String GET_MENTION_SEARCH_SCORE

See Also:

Constant Field Values

EVAL_ON_HUMAN_ONLY

public static final boolean EVAL_ON_HUMAN_ONLY

See Also:

Constant Field Values

Constructor Detail

CandidateRetrievalOptimizationRoute

public CandidateRetrievalOptimizationRoute(Configuration configuration)

Method Detail

createGuiceInjector

protected com.google.inject.Injector createGuiceInjector(de.julielab.geneexpbase.configuration.Configuration configuration)

Specified by:

createGuiceInjector in class de.julielab.geneexpbase.hpo.HpoRoute

getRouteEndpoint

public String getRouteEndpoint()

Specified by:

getRouteEndpoint in class de.julielab.geneexpbase.hpo.HpoRoute

getNumSplits

public int getNumSplits()

Specified by:

getNumSplits in class de.julielab.geneexpbase.hpo.HpoRoute

getDevSamplingFrequency

public int getDevSamplingFrequency()

Specified by:

getDevSamplingFrequency in class de.julielab.geneexpbase.hpo.HpoRoute

getActiveCorpora

protected List<de.julielab.geneexpbase.hpo.HpoInstance> getActiveCorpora()

Specified by:

getActiveCorpora in class de.julielab.geneexpbase.hpo.HpoRoute

getTaskName

protected String getTaskName()

Specified by:

getTaskName in class de.julielab.geneexpbase.hpo.HpoRoute

getDefaultMetric

protected de.julielab.geneexpbase.hpo.HpoRoute.Metric getDefaultMetric()

Specified by:

getDefaultMetric in class de.julielab.geneexpbase.hpo.HpoRoute

calculateScore

public String calculateScore(de.julielab.geneexpbase.hpo.HpoInstance si,
                             de.julielab.geneexpbase.configuration.Parameters parameterMap,
                             int seed,
                             int cutoffTime,
                             int resourceBudget,
                             int maxResourceBudget,
                             de.julielab.geneexpbase.hpo.HpoRoute.Metric returnMetric,
                             int runId)

Specified by:

calculateScore in class de.julielab.geneexpbase.hpo.HpoRoute