Package de.julielab.genemapper.filtering.families
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Interface Summary Interface Description GeneConfigurationDependentPipe Some pipes access resources whose path are given in the gene configuration and which cannot be stored on disc when saving the model. -
Class Summary Class Description AcronymPipe ChemicalSuffix Taken from GNormPlus code: Wei, C.ContextEmbeddingPipe ContextPosPipe FamilyConfidencePipe FamilyGenegroupProbabilityPipe FamilyMatchPipe FamilyUtils GeneMention2Token GeneMentionFamilyFeatureSetter Experimental.GeneSet2Token InstanceListCreator IsAPipe IsFamilyPipe LastWordPipe LowerCaseBoWPipe MentionEnvironmentPipe MentionPrefixPipe This pipe adds a feature indicated whether the given gene name is a prefix of another gene in the same document.MentionTypeHint Taken from GNormPlus code: Wei, C.NoDbHitsPipe This pipe adds a feature indicated whether the given gene name is a prefix of the official symbol of the gene candidate that was retrieved for the gene name.NonDescriptivePipe NormalizeFeaturesForGeneSetSize PluralPipe PoSBoWPipe ProteinSymbols Taken from GNormPlus code: Wei, C.RuleBasedFamilyAssigner SetFeatureVectorToGeneSetPipe SetInstanceSourceToGeneSetPipe SpecifierDetectionPipe SymbolPrefixPipe This pipe adds a feature indicated whether the given gene name is a prefix of the official symbol of the gene candidate that was retrieved for the gene name.UnspecifiedPipe WordEmbeddingPipe