Package de.julielab.genemapper.filtering.families

Class MentionPrefixPipe

java.lang.Object

cc.mallet.pipe.Pipe

de.julielab.genemapper.filtering.families.MentionPrefixPipe

All Implemented Interfaces:

cc.mallet.types.AlphabetCarrying, Serializable

public class MentionPrefixPipe
extends cc.mallet.pipe.Pipe

This pipe adds a feature indicated whether the given gene name is a prefix of another gene in the same document. This could point to the given name being a family name.

Author:

faessler

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
MentionPrefixPipe(String prefix)

Method Summary

Modifier and Type	Method	Description
cc.mallet.types.Instance	pipe(cc.mallet.types.Instance inst)

Methods inherited from class cc.mallet.pipe.Pipe

alphabetsMatch, getAlphabet, getAlphabets, getDataAlphabet, getInstanceId, getTargetAlphabet, instanceFrom, instancesFrom, instancesFrom, isDataAlphabetSet, isTargetProcessing, newIteratorFrom, preceedingPipeDataAlphabetNotification, preceedingPipeTargetAlphabetNotification, precondition, readResolve, setDataAlphabet, setOrCheckDataAlphabet, setOrCheckTargetAlphabet, setTargetAlphabet, setTargetProcessing

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MentionPrefixPipe

public MentionPrefixPipe(String prefix)
                  throws IOException,
                         GeneMapperException

Throws:

IOException

GeneMapperException

Method Detail

pipe

public cc.mallet.types.Instance pipe(cc.mallet.types.Instance inst)

Overrides:

pipe in class cc.mallet.pipe.Pipe