Package de.julielab.genemapper.filtering.families

Class LastWordPipe

java.lang.Object

cc.mallet.pipe.Pipe

de.julielab.genemapper.filtering.families.LastWordPipe

All Implemented Interfaces:

cc.mallet.types.AlphabetCarrying, Serializable

public class LastWordPipe
extends cc.mallet.pipe.Pipe

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
LastWordPipe(String prefix)
LastWordPipe(String prefix, boolean useGeneset)

Method Summary

Modifier and Type	Method	Description
void	addFeaturesForGeneMention(cc.mallet.types.Token t, de.julielab.geneexpbase.genemodel.GeneDocument d, de.julielab.geneexpbase.genemodel.GeneMention gm, edu.ucdenver.ccp.nlp.biolemmatizer.BioLemmatizer bioLemmatizer)
cc.mallet.types.Instance	pipe(cc.mallet.types.Instance inst)

Methods inherited from class cc.mallet.pipe.Pipe

alphabetsMatch, getAlphabet, getAlphabets, getDataAlphabet, getInstanceId, getTargetAlphabet, instanceFrom, instancesFrom, instancesFrom, isDataAlphabetSet, isTargetProcessing, newIteratorFrom, preceedingPipeDataAlphabetNotification, preceedingPipeTargetAlphabetNotification, precondition, readResolve, setDataAlphabet, setOrCheckDataAlphabet, setOrCheckTargetAlphabet, setTargetAlphabet, setTargetProcessing

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LastWordPipe

public LastWordPipe(String prefix,
                    boolean useGeneset)

LastWordPipe

public LastWordPipe(String prefix)

Method Detail

pipe

public cc.mallet.types.Instance pipe(cc.mallet.types.Instance inst)

Overrides:

pipe in class cc.mallet.pipe.Pipe

addFeaturesForGeneMention

public void addFeaturesForGeneMention(cc.mallet.types.Token t,
                                      de.julielab.geneexpbase.genemodel.GeneDocument d,
                                      de.julielab.geneexpbase.genemodel.GeneMention gm,
                                      edu.ucdenver.ccp.nlp.biolemmatizer.BioLemmatizer bioLemmatizer)