Package de.julielab.genemapper.filtering

Class MLGeneFilter

java.lang.Object

de.julielab.genemapper.filtering.MLGeneFilter

public class MLGeneFilter
extends Object

Constructor Summary

Constructors

Constructor	Description
MLGeneFilter()

Method Summary

Modifier and Type	Method	Description
static void	evaluate(File modelfile, File dataDirectory, MLGeneFilter mlGeneFilter, File goldGeneList)
void	filter(Stream<de.julielab.geneexpbase.genemodel.GeneDocument> documents)	The genes of al documents must have already have been selected.
void	loadModel(InputStream s)
static void	main(String[] args)
void	train(Stream<de.julielab.geneexpbase.genemodel.GeneDocument> documents)	The genes of al documents must have already have been selected.
void	writeModel(File modelfile)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MLGeneFilter

public MLGeneFilter()

Method Detail

main

public static void main(String[] args)
                 throws IOException

Throws:

IOException

evaluate

public static void evaluate(File modelfile,
                            File dataDirectory,
                            MLGeneFilter mlGeneFilter,
                            File goldGeneList)
                     throws IOException

Throws:

IOException

train

public void train(Stream<de.julielab.geneexpbase.genemodel.GeneDocument> documents)

The genes of al documents must have already have been selected.

Parameters:

documents -

filter

public void filter(Stream<de.julielab.geneexpbase.genemodel.GeneDocument> documents)

The genes of al documents must have already have been selected.

Parameters:

documents -

loadModel

public void loadModel(InputStream s)

writeModel

public void writeModel(File modelfile)