Package de.julielab.genemapper.evaluation.tools
-
Class Summary Class Description AcronymTextCoverWriter DocResult GenelistByTaxonomyFilter Reads a gene list (the second field must be the gene ID) and writes out the same file but filtered for a specific taxonomy ID.GenelistIdUpdater Reads a gene list and writes the same list where for each gene ID is checked if it has been replaced in NCBI Gene.GenelistTaxonomyPredictor Reads annotation data that includes genes, organisms, sentences, chunks and possibly more and predicts a taxonomy ID for each gene mention.GenelistToTaxonomyListConverter Reads a gene list (the second field must be the gene ID) and writes out the same file but with the gene IDs replaced by the taxonomy ID of the respective gene.IndexIdWriter InteractiveSpellingChecker JCasConverter MentionAndDocResult Stats TAPEvaluator TAPEvaluator.TapInputLine TAPEvaluator.TapInputList TAPEvaluator.TapResult TAPEvaluator.TapResultList TAPEvaluator.TapResultRecord