Package de.julielab.genemapper.disambig
Class DypsisDocumentDisambiguationData
- java.lang.Object
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- de.julielab.genemapper.disambig.DypsisDocumentDisambiguationData
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- All Implemented Interfaces:
DocumentDisambiguationData
public class DypsisDocumentDisambiguationData extends Object implements DocumentDisambiguationData
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Constructor Summary
Constructors Constructor Description DypsisDocumentDisambiguationData()
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Method Summary
All Methods Instance Methods Concrete Methods Deprecated Methods Modifier and Type Method Description voidaddNameLevelUnificationStrategy(DypsisMappingCore.NameLevelUnificationStrategy... strategies)Deprecated.cc.mallet.classify.ClassifiergetDisambiguationClassifier()de.julielab.ml.RankLibRankergetDisambiguationRanker()de.julielab.geneexpbase.genemodel.GeneDocumentgetDocument()de.julielab.geneexpbase.genemodel.GeneDocumentgetGeneDocument()Set<DypsisMappingCore.NameLevelUnificationStrategy>getNameLevelUnificationStrategies()StatsgetStats()voidsetDisambiguationClassifier(cc.mallet.classify.Classifier disambiguationClassifier)voidsetDisambiguationRanker(de.julielab.ml.RankLibRanker disambiguationRanker)voidsetDocument(de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)voidsetGeneDocument(de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)voidsetNameLevelUnificationStrategies(Set<DypsisMappingCore.NameLevelUnificationStrategy> nameLevelUnificationStrategies)voidsetStats(Stats stats)
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Method Detail
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getGeneDocument
public de.julielab.geneexpbase.genemodel.GeneDocument getGeneDocument()
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setGeneDocument
public void setGeneDocument(de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)
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getDisambiguationClassifier
public cc.mallet.classify.Classifier getDisambiguationClassifier()
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setDisambiguationClassifier
public void setDisambiguationClassifier(cc.mallet.classify.Classifier disambiguationClassifier)
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getDisambiguationRanker
public de.julielab.ml.RankLibRanker getDisambiguationRanker()
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setDisambiguationRanker
public void setDisambiguationRanker(de.julielab.ml.RankLibRanker disambiguationRanker)
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addNameLevelUnificationStrategy
@Deprecated public void addNameLevelUnificationStrategy(DypsisMappingCore.NameLevelUnificationStrategy... strategies)
Deprecated.This should be done before disambiguation happens- Parameters:
strategies-
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getDocument
public de.julielab.geneexpbase.genemodel.GeneDocument getDocument()
- Specified by:
getDocumentin interfaceDocumentDisambiguationData
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setDocument
public void setDocument(de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)
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getNameLevelUnificationStrategies
public Set<DypsisMappingCore.NameLevelUnificationStrategy> getNameLevelUnificationStrategies()
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setNameLevelUnificationStrategies
public void setNameLevelUnificationStrategies(Set<DypsisMappingCore.NameLevelUnificationStrategy> nameLevelUnificationStrategies)
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getStats
public Stats getStats()
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setStats
public void setStats(Stats stats)
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