Package de.julielab.genemapper.composites

Class TwoPartedRangePatternResolver

java.lang.Object

de.julielab.genemapper.composites.CompositePatternResolver

de.julielab.genemapper.composites.TwoPartedRangePatternResolver

public class TwoPartedRangePatternResolver
extends CompositePatternResolver

For composites like AKR1C1-AKR1C4.

Constructor Summary

Constructors

Constructor	Description
TwoPartedRangePatternResolver()

Method Summary

Modifier and Type	Method	Description
String	isEligible(String geneName)	Checks the gene name for eligibility with regards to the original gene name string.
String	matches(String tagging)	Requires the completed composite tagging via FlairCompositeMentionTagger and returns true if the respective subclass handles the given case.
List<ResolvedCompositeGeneName>	resolve(String originalMention, org.apache.commons.lang3.tuple.Pair<List<CompositeToken>,String> tokenizedMentionAndTagging)

Methods inherited from class de.julielab.genemapper.composites.CompositePatternResolver

getName

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TwoPartedRangePatternResolver

public TwoPartedRangePatternResolver()

Method Detail

isEligible

public String isEligible(String geneName)

Description copied from class: CompositePatternResolver

Checks the gene name for eligibility with regards to the original gene name string.

This step should return true in doubt but false when it is clear that the given mention cannot be a composite handled by the respective subclass. This is done to reduce unnecessary composite tagging time.

Specified by:

isEligible in class CompositePatternResolver

Parameters:

geneName - The original gene name string.

Returns:

true if this mention should tagged for composite tokens or false otherwise.

matches

public String matches(String tagging)

Description copied from class: CompositePatternResolver

Requires the completed composite tagging via FlairCompositeMentionTagger and returns true if the respective subclass handles the given case.

Specified by:

matches in class CompositePatternResolver

Parameters:

tagging - The gene name composite tagging result.

Returns:

Whether or not the given tagging is handled.

resolve

public List<ResolvedCompositeGeneName> resolve(String originalMention,
                                               org.apache.commons.lang3.tuple.Pair<List<CompositeToken>,String> tokenizedMentionAndTagging)

Specified by:

resolve in class CompositePatternResolver