ResolvedCompositeGeneName (Gene ID Mapper 2.5.0 API)

java.lang.Object
- java.util.AbstractCollection<E>
- - java.util.AbstractList<E>
  - - java.util.ArrayList<CompositeToken>
    - - de.julielab.genemapper.composites.ResolvedCompositeGeneName

All Implemented Interfaces:

Serializable, Cloneable, Iterable<CompositeToken>, Collection<CompositeToken>, List<CompositeToken>, RandomAccess
```
public class ResolvedCompositeGeneName
extends ArrayList<CompositeToken>
```
This class represents a re-assembled gene name from a formerly tokenized and possibly rearranged composite gene name to identify multiple gene names denoted by one composite expression. This class then represents individually identified mentions that should not be a composite any more.

See Also:

Serialized Form

Field Summary
- Fields inherited from class java.util.AbstractList
  modCount

Constructor Summary

Constructors
Constructor	Description
`ResolvedCompositeGeneName(Class<? extends CompositePatternResolver> resolutionComponent)`
`ResolvedCompositeGeneName(List<CompositeToken> tokens, Class<? extends CompositePatternResolver> resolutionComponent)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addAcronymForm(ResolvedCompositeGeneName acronymForm)`
`List<ResolvedCompositeGeneName>`	`getAcronymForms()`	Returns the acronym variant of this gene name, if it was embedded into the long form for this mention.
`int`	`getBegin()`
`int`	`getEnd()`
`Class<? extends CompositePatternResolver>`	`getResolutionComponent()`
`String`	`getTagging()`
`String`	`toString()`

Methods inherited from class java.util.ArrayList
add, add, addAll, addAll, clear, clone, contains, ensureCapacity, equals, forEach, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeIf, removeRange, replaceAll, retainAll, set, size, sort, spliterator, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractCollection
containsAll

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection
parallelStream, stream, toArray

Methods inherited from interface java.util.List
containsAll

- Constructor Detail
  - ResolvedCompositeGeneName
```
public ResolvedCompositeGeneName(Class<? extends CompositePatternResolver> resolutionComponent)
```
  - ResolvedCompositeGeneName
```
public ResolvedCompositeGeneName(List<CompositeToken> tokens,
                                 Class<? extends CompositePatternResolver> resolutionComponent)
```
- Method Detail
  - getAcronymForms
```
public List<ResolvedCompositeGeneName> getAcronymForms()
```
    Returns the acronym variant of this gene name, if it was embedded into the long form for this mention.
    
    For expressions like interleukin (IL) 2, the EmbeddedAcronymPatternResolver creates the resolved variant interleukin 2 and IL 2. The latter is set as the acronym to the first instead of returning both directly. The reason is that this is rather an alternative choice instead of an actual multiplication of one gene name into multiple names.
    
    Returns:
    
    The acronym variant of this gene name or null if there is none.
  - addAcronymForm
```
public void addAcronymForm(ResolvedCompositeGeneName acronymForm)
```
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class AbstractCollection<CompositeToken>
  - getTagging
```
public String getTagging()
```
  - getResolutionComponent
```
public Class<? extends CompositePatternResolver> getResolutionComponent()
```
  - getBegin
```
public int getBegin()
```
  - getEnd
```
public int getEnd()
```