Package de.julielab.genemapper.composites

Class FlairCompositeMentionTagger

java.lang.Object

de.julielab.genemapper.composites.FlairCompositeMentionTagger

All Implemented Interfaces:

de.julielab.geneexpbase.services.ShutdownRequiring

public class FlairCompositeMentionTagger
extends Object
implements de.julielab.geneexpbase.services.ShutdownRequiring

Constructor Summary

Constructors

Constructor	Description
FlairCompositeMentionTagger(de.julielab.geneexpbase.services.CacheService cacheService, Configuration configuration)

Method Summary

Modifier and Type	Method	Description
void	shutdown()
org.apache.commons.lang3.tuple.Pair<List<CompositeToken>,String>	tagGeneMention(String untokenizedMention, org.apache.commons.lang3.Range<Integer> geneOffsets, de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)
List<org.apache.commons.lang3.tuple.Pair<List<CompositeToken>,String>>	tagGeneMention(List<String> untokenizedMentions, org.apache.commons.lang3.Range<Integer> geneOffsets, de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FlairCompositeMentionTagger

@Inject
public FlairCompositeMentionTagger(de.julielab.geneexpbase.services.CacheService cacheService,
                                   Configuration configuration)
                            throws IOException

Throws:

IOException

Method Detail

tagGeneMention

public org.apache.commons.lang3.tuple.Pair<List<CompositeToken>,String> tagGeneMention(String untokenizedMention,
                                                                                             org.apache.commons.lang3.Range<Integer> geneOffsets,
                                                                                             de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)
                                                                                      throws IOException,
                                                                                             InterruptedException

Throws:

IOException

InterruptedException

tagGeneMention

public List<org.apache.commons.lang3.tuple.Pair<List<CompositeToken>,String>> tagGeneMention(List<String> untokenizedMentions,
                                                                                                   org.apache.commons.lang3.Range<Integer> geneOffsets,
                                                                                                   de.julielab.geneexpbase.genemodel.GeneDocument geneDocument)
                                                                                            throws IOException,
                                                                                                   InterruptedException

Throws:

IOException

InterruptedException

shutdown

public void shutdown()

Specified by:

shutdown in interface de.julielab.geneexpbase.services.ShutdownRequiring