Package de.julielab.genemapper.apps

Class AppUtils

java.lang.Object

de.julielab.genemapper.apps.AppUtils

public class AppUtils
extends Object

Method Summary

Modifier and Type	Method	Description
static void	collectMatchingCandidates(Set<String> taxIds, List<de.julielab.geneexpbase.candidateretrieval.SynHit> candidates, List<String> synonymsAndTax)	Retrieves the taxonomy IDs that have the synonym of the first candidate
static de.julielab.geneexpbase.candidateretrieval.SynHit	getCandidateForTaxId(List<de.julielab.geneexpbase.candidateretrieval.SynHit> candidates, String taxId)	Sets the given taxonomy ID to the top candidate and returns it.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

collectMatchingCandidates

public static void collectMatchingCandidates(Set<String> taxIds,
                                             List<de.julielab.geneexpbase.candidateretrieval.SynHit> candidates,
                                             List<String> synonymsAndTax)

Retrieves the taxonomy IDs that have the synonym of the first candidate

Parameters:

taxIds -

candidates -

synonymsAndTax -

getCandidateForTaxId

public static de.julielab.geneexpbase.candidateretrieval.SynHit getCandidateForTaxId(List<de.julielab.geneexpbase.candidateretrieval.SynHit> candidates,
                                                                                     String taxId)

Sets the given taxonomy ID to the top candidate and returns it.

If the top candidate doesn't have the passed taxonomy ID, the next candidates will be tried until one candidate does have the taxonomy ID or the list is depleted.

Parameters:

candidates -

taxId -

Returns: