Package de.julielab.costosys.cli

Class QueryPubMed

  • public class QueryPubMed
extends java.lang.Object

    • Constructor Summary

      Constructors 
      Constructor Description
      QueryPubMed()  

    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static java.util.ArrayList<java.lang.String> query​(java.lang.String query)
      Query PubMed via REST-API, returning up to 10e8 matched PMIDs.

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • QueryPubMed

        public QueryPubMed()

    • Method Detail

      • query

        public static java.util.ArrayList<java.lang.String> query​(java.lang.String query)
        Query PubMed via REST-API, returning up to 10e8 matched PMIDs. Queried terms get expanded, e.g. "Il-1" will match "interleukin-1". Searches with really many results (e.g. "cancer") need increased heap space! More details: http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/esearch_help.html
        Parameters:
        query - -Query for PubMed as a String
        Returns:
        - ArrayList, containing PMIDs as Strings