A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

A - Variable in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

a() - Method in class com.aliasi.util.Pair

Return the first value of the pair.

A - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element a.

a() - Method in class com.aliasi.xml.XHtmlWriter

Start an a element with no attributes.

a(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an a element with the specified attributes.

a(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an a element with the specified attribute and value.

a(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an a element with the specified attributes and values.

a(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an a element with the specified attributes and values.

a(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an a element with the specified attributes and values.

ABBR - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element abbr.

abbr() - Method in class com.aliasi.xml.XHtmlWriter

Start an abbr element with no attributes.

abbr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an abbr element with the specified attributes.

abbr(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an abbr element with the specified attribute and value.

abbr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an abbr element with the specified attributes and values.

abbr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an abbr element with the specified attributes and values.

abbr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an abbr element with the specified attributes and values.

ABBR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the abbr attribute.

ABRACADABRA - Variable in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

AbstractCharLmRescoringChunker<B extends NBestChunker,O extends LanguageModel.Process,C extends LanguageModel.Sequence> - Class in com.aliasi.chunk

An AbstractCharLmRescoringChunker provides the basic character language-model rescoring model used by the trainable CharLmRescoringChunker and its compiled version.

AbstractCharLmRescoringChunker(B, int, O, Map<String, Character>, Map<String, C>) - Constructor for class com.aliasi.chunk.AbstractCharLmRescoringChunker

Construct a rescoring chunker based on the specified underlying chunker, with the specified number of underlying chunkings rescored, based on the models and type encodings provided in the last three arguments.

AbstractCommand - Class in com.aliasi.util

A CommandLineArguments object represents a the command-line arguments.

AbstractCommand(String[]) - Constructor for class com.aliasi.util.AbstractCommand

Constructs a command-line arguments object from the specified arguments list using no default values.

AbstractCommand(String[], Properties) - Constructor for class com.aliasi.util.AbstractCommand

Constructs a command-line arguments object from the specified arguments using the specified properties as default values.

AbstractCommandTest - Class in com.aliasi.test.unit.util

AbstractCommandTest() - Constructor for class com.aliasi.test.unit.util.AbstractCommandTest

AbstractDictionary<C> - Class in com.aliasi.dict

An AbstractDictionary is a dictionary with convenience implementations of most methods.

AbstractDictionary() - Constructor for class com.aliasi.dict.AbstractDictionary

Construct an abstract dictionary.

AbstractDiscreteDistribution - Class in com.aliasi.stats

An AbstractDiscreteDistribution provides a default abstract implementation of discrete distributions.

AbstractDiscreteDistribution() - Constructor for class com.aliasi.stats.AbstractDiscreteDistribution

Construct an abstract discrete distribution.

AbstractDiscreteDistributionTest - Class in com.aliasi.test.unit.stats

AbstractDiscreteDistributionTest() - Constructor for class com.aliasi.test.unit.stats.AbstractDiscreteDistributionTest

AbstractDiscreteDistributionTest.Distro - Class in com.aliasi.test.unit.stats

AbstractDiscreteDistributionTest.Distro() - Constructor for class com.aliasi.test.unit.stats.AbstractDiscreteDistributionTest.Distro

AbstractExternalizable - Class in com.aliasi.util

The AbstractExternalizer is an adapter for read resolved externalizables.

AbstractExternalizable() - Constructor for class com.aliasi.util.AbstractExternalizable

Construct an abstract externalizable.

AbstractExternalizableTest - Class in com.aliasi.test.unit.util

AbstractExternalizableTest() - Constructor for class com.aliasi.test.unit.util.AbstractExternalizableTest

AbstractHierarchicalClusterer<E> - Class in com.aliasi.cluster

An AbstractHierachicalClusterer provides an adapter for clustering for hierarchical clusterers.

AbstractHierarchicalClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.AbstractHierarchicalClusterer

Construct an abstract hierarchical clusterer with the specified maximum distance.

AbstractHmm - Class in com.aliasi.hmm

An AbstractHmm is an abstract implementation of a hidden Markov model which manages a symbol table and defines the basic methods in terms of the symbolic linear probability methods.

AbstractHmm(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmm

Construct an HMM with the specified symbol table.

AbstractHmmEstimator - Class in com.aliasi.hmm

An HmmEstimator may be used to train a hidden Markov model (HMM).

AbstractHmmEstimator(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmmEstimator

Construct an HMM estimator with the specified tag symbol table.

AbstractMatrix - Class in com.aliasi.matrix

An AbstractMatrix implements most of a matrix's functionality in terms of methods for accessing numbers of rows and columns and values.

AbstractMatrix() - Constructor for class com.aliasi.matrix.AbstractMatrix

Construct an abstract matrix.

AbstractMentionChain - Class in com.aliasi.coref

An abstract implementation of a mention chain in terms of matching and killing functions.

AbstractMentionChain(Mention, int, int) - Constructor for class com.aliasi.coref.AbstractMentionChain

AbstractMentionFactory - Class in com.aliasi.coref

The AbstractMentionFactory class implements the mention factory interface using linguistically-motivated abstract methods.

AbstractMentionFactory(TokenizerFactory) - Constructor for class com.aliasi.coref.AbstractMentionFactory

Construct an abstract mention factory with the specified tokenizer factory.

AbstractSentenceModel - Class in com.aliasi.sentences

An AbstractSentenceModel implements a sentence model in terms of the method that adds indices to the collection.

AbstractSentenceModel() - Constructor for class com.aliasi.sentences.AbstractSentenceModel

Construct an abstract sentence model.

AbstractSentenceModelTest - Class in com.aliasi.test.unit.sentences

AbstractSentenceModelTest() - Constructor for class com.aliasi.test.unit.sentences.AbstractSentenceModelTest

AbstractSymbolTable - Class in com.aliasi.test.unit.symbol

AbstractSymbolTable() - Constructor for class com.aliasi.test.unit.symbol.AbstractSymbolTable

AbstractVector - Class in com.aliasi.matrix

An AbstractVector implements most of a vector's functionality in terms of methods for dimensionality and values.

AbstractVector() - Constructor for class com.aliasi.matrix.AbstractVector

Construct an abstract vector.

AbstractVectorTest - Class in com.aliasi.test.unit.matrix

AbstractVectorTest() - Constructor for class com.aliasi.test.unit.matrix.AbstractVectorTest

AbstractVectorTest.MutVect - Class in com.aliasi.test.unit.matrix

AbstractVectorTest.MutVect() - Constructor for class com.aliasi.test.unit.matrix.AbstractVectorTest.MutVect

AbstractVectorTest.Vector1 - Class in com.aliasi.test.unit.matrix

AbstractVectorTest.Vector1() - Constructor for class com.aliasi.test.unit.matrix.AbstractVectorTest.Vector1

AbstractVectorTest.Vector2 - Class in com.aliasi.test.unit.matrix

AbstractVectorTest.Vector2() - Constructor for class com.aliasi.test.unit.matrix.AbstractVectorTest.Vector2

accept(String) - Method in class com.aliasi.io.FileExtensionFilter

Returns true if the specified file name has an acceptable suffix as specified in the constructor.

accept(File) - Method in class com.aliasi.io.FileExtensionFilter

Return true if the specified file has an an acceptable suffix as specified in the constructor.

accept(E) - Method in class com.aliasi.util.Iterators.Filter

Returns true for objects returned by the contained iterator that should be returned by this iterator.

ACCEPT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the accept attribute.

ACCEPT_CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the accept-charset attribute.

acceptCategory() - Method in class com.aliasi.classify.BinaryLMClassifier

Returns the category assigned to matching/accepted cases.

ACCESSKEY - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the accesskey attribute.

accuracy() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the sample accuracy of the responses.

accuracyDeviation() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the standard deviation of the accuracy.

ACRONYM - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element acronym.

acronym() - Method in class com.aliasi.xml.XHtmlWriter

Start an acronym element with no attributes.

acronym(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an acronym element with the specified attributes.

acronym(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an acronym element with the specified attribute and value.

acronym(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an acronym element with the specified attributes and values.

acronym(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an acronym element with the specified attributes and values.

acronym(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an acronym element with the specified attributes and values.

ACTION - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the action attribute.

add(Chunk) - Method in class com.aliasi.chunk.ChunkingImpl

Add a chunk this this chunking.

add(Mention, int) - Method in class com.aliasi.coref.AbstractMentionChain

Adds the specified mention appearing at the specified sentence offset to this mention chain, and calls the method AbstractMentionChain.add(Mention), which may be overridden by subclasses to carry out additional bookkeeping when new mentions are added.

add(Mention) - Method in class com.aliasi.coref.AbstractMentionChain

Adds the specified mention appearing at the specified sentence offset to this mention chain.

add(Mention, int) - Method in interface com.aliasi.coref.MentionChain

Adds the specified mention appearing at the specified sentence offset to this mention chain.

add(Mention) - Method in class com.aliasi.coref.MentionChainImpl

Adds the specified mention appearing at the specified sentence offset to this mention chain.

add(Vector) - Method in class com.aliasi.matrix.AbstractVector

Returns the result of adding the specified vector to this vector.

add(Vector) - Method in class com.aliasi.matrix.DenseVector

add(Vector) - Method in class com.aliasi.matrix.SparseFloatVector

add(Vector) - Method in interface com.aliasi.matrix.Vector

Returns a new vector that is the reuslt of adding this vector to the specified vector.

add(String) - Method in class com.aliasi.test.unit.MockObjectHelper

add(String, Object) - Method in class com.aliasi.test.unit.MockObjectHelper

add(String, Object, Object) - Method in class com.aliasi.test.unit.MockObjectHelper

add(String, Object, Object, Object) - Method in class com.aliasi.test.unit.MockObjectHelper

add(String, Object, Object, Object, Object) - Method in class com.aliasi.test.unit.MockObjectHelper

add(String, Object, Object, Object, Object, Object) - Method in class com.aliasi.test.unit.MockObjectHelper

add(String, Object, Object, Object, Object, Object, Object) - Method in class com.aliasi.test.unit.MockObjectHelper

add(char, char[]) - Static method in class com.aliasi.util.Arrays

Return the result of adding the specified character to the specified sorted character array.

add(E) - Method in class com.aliasi.util.BinaryMap

Adds the specified element to the map with value 1.

add(E) - Method in class com.aliasi.util.BoundedPriorityQueue

Throw an unsupported operation exception.

add(E) - Method in class com.aliasi.util.CompactHashSet

Add the specified object to the set if it is not already present, returning true if the set didn't already contain the element.

add(E) - Method in class com.aliasi.util.MinMaxHeap

Add the element to the heap.

addAll(Collection<Chunk>) - Method in class com.aliasi.chunk.ChunkingImpl

Adds all of the chunks in the specified collection to this chunking.

addCase(Chunking, Chunking) - Method in class com.aliasi.chunk.ChunkingEvaluation

Add an evaluation case consisting of a reference chunk set and a response chunk set.

addCase(boolean, boolean) - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Adds a case with the specified reference and response classifications.

addCase(boolean, double) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Add a case with the specified correctness and response score.

addCase(Chunking, Chunking) - Method in class com.aliasi.sentences.SentenceEvaluation

Add the case corresponding to the specified reference and response chunkings.

addCase(String, String) - Method in class com.aliasi.spell.SpellEvaluator

Adds a training case to the spelling evaluator in the form of input text and its corrected form.

addCase(Tagging<E>, TagLattice<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Add a case for evaluation consisting of the gold-standard reference tagging and a lattice representing the output of a marginal tagger.

addCase(Tagging<E>, Iterator<ScoredTagging<E>>) - Method in class com.aliasi.tag.NBestTaggerEvaluator

Add a test case consisting of the specified reference tagging and iterator over responses.

addCase(Tagging<E>, Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator

Add a test case to this evaluator consisting of the specified reference and response taggings.

addClassification(String, Classification, E) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Adds the specified classification as a response for the specified reference category.

addDefaultProperty(String, String) - Method in class com.aliasi.util.AbstractCommand

Adds the specified key and value as default arguments.

addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.AbstractDictionary

Adds the specified dictionary entry to the dictionary.

addEntry(DictionaryEntry<C>) - Method in interface com.aliasi.dict.Dictionary

Adds the specified dictionary entry to the dictionary.

addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.MapDictionary

addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.TrieDictionary

Equal entries will be ignored.

AddFeatureExtractor<E> - Class in com.aliasi.features

An AddFeatureExtractor returns feature vectors that result from summing the feature vectors returned by a collection of contained feature extractors.

AddFeatureExtractor(Collection<? extends FeatureExtractor<? super E>>) - Constructor for class com.aliasi.features.AddFeatureExtractor

Construct an additive feature extractor from the specified collection of extractors.

AddFeatureExtractor(FeatureExtractor<? super E>, FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.AddFeatureExtractor

Construct an additive feature extractor from the specified pair of extractors.

AddFeatureExtractor(FeatureExtractor<? super E>...) - Constructor for class com.aliasi.features.AddFeatureExtractor

Construct an additive feature extractor from the specified extractors.

AddFeatureExtractorTest - Class in com.aliasi.test.unit.features

AddFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.AddFeatureExtractorTest

addHonorific(String) - Method in class com.aliasi.coref.AbstractMentionChain

Add the specified honorific to the set of honorifics for this chain.

addInterceptFeature() - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns true if this classifier automatically adds an intercept feature to each feature vector.

addInterceptFeature() - Method in class com.aliasi.crf.ChainCrf

Returns true if this CRF adds an intercept feature with value 1.0 at index 0 to all feature vectors.

addMember(K, M) - Method in class com.aliasi.util.ObjectToSet

Add a member to the value of the set mapped to by the specified key.

addMembers(K, Set<? extends M>) - Method in class com.aliasi.util.ObjectToSet

Adds a set of members to the value of the set mapped to by the specified key.

addMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Incrments the positive reference count without adding a case from the classifier.

addNegativeMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Incrments the negative reference count without adding a case from the classifier.

ADDRESS - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element address.

address() - Method in class com.aliasi.xml.XHtmlWriter

Start an address element with no attributes.

address(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an address element with the specified attributes.

address(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an address element with the specified attribute and value.

address(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an address element with the specified attributes and values.

address(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an address element with the specified attributes and values.

address(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an address element with the specified attributes and values.

addSimpleAttribute(AttributesImpl, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Add a local name and value to an attributes implementation as type "CDATA".

addState(String) - Method in class com.aliasi.hmm.AbstractHmm

Adds the state with the specified name to this hidden Markov model.

addSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler

Add a symbol to the symbol table to be compiled.

addSynonym(String, String) - Method in class com.aliasi.coref.matchers.SynonymMatch

Adds the two phrases as synonyms for one another.

addTest(E) - Method in class com.aliasi.corpus.ListCorpus

Add the specified item to the list of test items.

addTrain(E) - Method in class com.aliasi.corpus.ListCorpus

Add the specified item to the list of training items.

ALIGN - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the align attribute.

allDigits(String) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters making up the specified string are digits.

allDigits(char[], int, int) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters in the specified range are digits.

allLetters(char[]) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters in the specified array are letters.

allLowerCase(char[]) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters in the specified array are lower case letters.

allLowerCase(CharSequence) - Static method in class com.aliasi.util.Strings

Returns true if the specified character sequence contains only lowercase letters.

allowDelete() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns true if this spell checker allows deletions.

allowInsert() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns true if this spell checker allows insertions.

allowMatch() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns true if this spell checker allows matches.

allowsRejection() - Method in class com.aliasi.stats.AnnealingSchedule

Return true if this annealing schedule allows updates to be rejected.

allowSubstitute() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns true if this spell checker allows substitutions.

allowTranspose() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns true if this spell checker allows transpositions.

allPunctuation(char[]) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters in the specified array are punctuation as specified by Strings.isPunctuation(char).

allPunctuation(String) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters in the specified string are punctuation as specified by Strings.isPunctuation(char).

allSymbols(char[]) - Static method in class com.aliasi.util.Strings

Returns true if none of the characters in the specified array are letters or digits.

allUpperCase(char[]) - Static method in class com.aliasi.util.Strings

Returns true if all of the characters in the specified array are upper case letters.

allWhitespace(StringBuilder) - Static method in class com.aliasi.util.Strings

Returns true if the specified buffer contains only whitespace characters.

allWhitespace(String) - Static method in class com.aliasi.util.Strings

Returns true if the specified string contains only whitespace characters.

allWhitespace(char[], int, int) - Static method in class com.aliasi.util.Strings

Returns true if the specified range of the specified character array only whitespace characters, as defined for characters by Strings.isWhitespace(char c).

ALT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the alt attribute.

AnnealingSchedule - Class in com.aliasi.stats

An AnnealingSchedule instance implements a method to return the learning rate for a specified epoch.

AnnealingSchedule() - Constructor for class com.aliasi.stats.AnnealingSchedule

Do-nothing constructor to be used by concrete implementations.

APPLET - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element applet.

applet() - Method in class com.aliasi.xml.XHtmlWriter

Start an applet element with no attributes.

applet(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an applet element with the specified attributes.

applet(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an applet element with the specified attribute and value.

applet(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an applet element with the specified attributes and values.

applet(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an applet element with the specified attributes and values.

applet(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an applet element with the specified attributes and values.

ApproxDictionaryChunker - Class in com.aliasi.dict

An ApproxDictionaryChunker implements a chunker that produces chunks based on weighted edit distance of strings from dictionary entries.

ApproxDictionaryChunker(TrieDictionary<String>, TokenizerFactory, WeightedEditDistance, double) - Constructor for class com.aliasi.dict.ApproxDictionaryChunker

Construct an approximate dictionary chunker from the specified dictionary, tokenizer factory, weighted edit distance and distance bound.

ApproxDictionaryChunkerTest - Class in com.aliasi.test.unit.dict

ApproxDictionaryChunkerTest() - Constructor for class com.aliasi.test.unit.dict.ApproxDictionaryChunkerTest

ARCHIVE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the archive attribute.

AREA - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element area.

area() - Method in class com.aliasi.xml.XHtmlWriter

Start an area element with no attributes.

area(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an area element with the specified attributes.

area(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an area element with the specified attribute and value.

area(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an area element with the specified attributes and values.

area(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an area element with the specified attributes and values.

area(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an area element with the specified attributes and values.

areaUnderPrCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the area under the curve (AUC) for the recall-precision curve with interpolation as specified.

areaUnderRocCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the area under the receiver operating characteristic (ROC) curve.

array(E[]) - Static method in class com.aliasi.util.Iterators

Returns an iterator over the specified array of objects.

Arrays - Class in com.aliasi.util

Static utility methods for processing arrays.

arraySlice(E[], int, int) - Static method in class com.aliasi.util.Iterators

Returns a newly constructed iterator over the specified object array slice.

ArraysTest - Class in com.aliasi.test.unit.util

ArraysTest() - Constructor for class com.aliasi.test.unit.util.ArraysTest

arrayToString(Object[]) - Static method in class com.aliasi.util.Arrays

Returns the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.

arrayToStringBuilder(StringBuilder, Object[]) - Static method in class com.aliasi.util.Arrays

Appends to the string buffer the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.

ASCII - Static variable in class com.aliasi.util.Strings

String representing the ASCII encoding for characters.

assertChunking(Chunker, Chunking) - Static method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

assertChunkingCompile(C, Chunking) - Static method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

assertComparableSelf(Comparable) - Static method in class com.aliasi.test.unit.Asserts

Tests whether the first argument is equal to itself according to java.lang.Comparable.compareTo.

assertComparableSelf(String, Comparable) - Static method in class com.aliasi.test.unit.Asserts

Tests within a specified test case whether the first argument is equal to itself according to java.lang.Comparable.compareTo.

assertConditionalLM(LanguageModel.Conditional) - Method in class com.aliasi.test.unit.lm.NGramProcessLMTest

assertCopy(TrieCharSeqCounter) - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

assertCoref(String[], String[], int[], int[]) - Method in class com.aliasi.test.unit.coref.WithinDocCorefTest

assertCounters(TrieCharSeqCounter, TrieCharSeqCounter) - Method in class com.aliasi.test.unit.lm.CharSeqMultiCounterTest

assertDistro(MultivariateConstant) - Method in class com.aliasi.test.unit.stats.MultivariateConstantTest

assertDistro(MultivariateDistribution) - Method in class com.aliasi.test.unit.stats.MultivariateEstimatorTest

assertEqEstimate(TokenizedLM, CharSequence) - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

assertEqualCounts(TrieCharSeqCounter, String[], int) - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

assertEqualsArray(double[], double[], double) - Static method in class com.aliasi.test.unit.Asserts

Tests that the two specified arrays are not null, the same length, and the element at each index is equal.

assertEqualsArray(String, double[], double[], double) - Static method in class com.aliasi.test.unit.Asserts

Tests that the two specified arrays are not null, the same length, and the element at each index is equal.

assertEqualsArray2D(double[][], double[][], double) - Static method in class com.aliasi.test.unit.Asserts

assertEqualsChunking(Chunking, Chunking) - Static method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

assertEqualsIterations(Iterator, Iterator) - Static method in class com.aliasi.test.unit.Asserts

Tests that the two iterators return the same elements as compared by #assertEquals(Object,Object).

assertEqualsIterations(String, Iterator, Iterator) - Static method in class com.aliasi.test.unit.Asserts

Tests that the two iterators return the same elements as compared by #assertEquals(Object,Object), with the specified error message.

assertFactory(TokenizerFactory, String, String...) - Static method in class com.aliasi.test.unit.tokenizer.TokenizerTest

assertFactory(TokenizerFactory, String, String[], String[]) - Static method in class com.aliasi.test.unit.tokenizer.TokenizerTest

assertFeats(FeatureExtractor<E>, E, String[], double[]) - Static method in class com.aliasi.test.unit.features.MockFeatureExtractor

assertFullEquals(Object, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts that two objects are equal and they obey the subsequent requirements of the equality contract.

assertFullEquals(String, Object, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts within a specified test case that two objects are equal and they obey the subsequent requirements of the equality contract.

assertFullLessThan(Comparable, Comparable) - Static method in class com.aliasi.test.unit.Asserts

Tests whether the first argument is less than the second argument according to its Comparable.compareTo method, and vice-versa.

assertFullLessThan(String, Comparable, Comparable) - Static method in class com.aliasi.test.unit.Asserts

Tests within a specified test case whether the first argument is less than the second argument according to its Comparable.compareTo method, and vice-versa.

assertFullNotEquals(Object, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts that two objects are not equal and they obey the subsequent reqirements of the equality contract.

assertFullNotEquals(String, Object, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts within a specified test case that two objects are not equal and they obey the subsequent reqirements of the equality contract.

assertFullSerialization(Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts that the object may be serialized and deserialized and the result will be fully equal to this object in the sense defined by Asserts.assertFullEquals(java.lang.Object, java.lang.Object).

assertFullSerialization(String, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts within a specified test case that the object may be serialized and deserialized and the result will be fully equal to this object in the sense defined by Asserts.assertFullEquals(java.lang.Object, java.lang.Object).

assertIteration(Iterator<?>, Object[]) - Method in class com.aliasi.test.unit.util.IteratorsTest

assertIteration(Object[]) - Method in class com.aliasi.test.unit.util.IteratorsTest

assertLess(Comparator<? super E>, E, E) - Static method in class com.aliasi.test.unit.Asserts

assertModel(NGramProcessLM) - Method in class com.aliasi.test.unit.lm.NGramProcessLMTest

assertNotEquals(Object, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts that the two specified objects are not both null and not both non-null and equal.

assertNotEquals(String, Object, Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts that the two specified objects are not both null and not both non-null and equal.

assertNotSerializable(Object) - Static method in class com.aliasi.test.unit.Asserts

Asserts - Class in com.aliasi.test.unit

assertSame(Comparator<? super E>, E, E) - Static method in class com.aliasi.test.unit.Asserts

assertSliceIterator(Object[], int, int) - Method in class com.aliasi.test.unit.util.IteratorsTest

assertTokenization(TokenizerFactory, String, String[], String[]) - Static method in class com.aliasi.test.unit.tokenizer.TokenizerTest

assertTokenize(String, String[], String[], int[]) - Method in class com.aliasi.test.unit.tokenizer.IndoEuropean

assertTokenize(String, String[], String[], int[]) - Method in class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenizerFactoryTest

assertTokenize(String, String[], String[], int[], TokenizerFactory) - Method in class com.aliasi.test.unit.tokenizer.RegExTokenizerFactoryTest

assertTwoElementTable(SymbolTable) - Method in class com.aliasi.test.unit.symbol.AbstractSymbolTable

asSet(E...) - Static method in class com.aliasi.util.CollectionUtils

Return the hash set consisting of adding the specified argument to a newly constructed set.

asSymbolTable(String[]) - Static method in class com.aliasi.symbol.SymbolTableCompiler

Returns a compiled symbol table constructed from the specified list of symbols with symbol identifiers determined by array position.

AutoCompleter - Class in com.aliasi.spell

An AutoCompleter maintains a dictionary of phrases with counts and provides suggested completions based on prefix matching by weighted edit distance and phrase likelihood.

AutoCompleter(Map<String, ? extends Number>, WeightedEditDistance, int, int, double) - Constructor for class com.aliasi.spell.AutoCompleter

Construct an automatic completer from the specified phrases, phrase counts, edit distance, and search parameters.

AutoCompleterTest - Class in com.aliasi.test.unit.spell

AutoCompleterTest() - Constructor for class com.aliasi.test.unit.spell.AutoCompleterTest

available() - Method in class com.aliasi.io.BitInput

Returns number of bits available for reading without blocking.

averageConditionalProbability(String, String) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator

Returns the average conditional probability of the specified response category for test cases with the specified reference category.

averageConditionalProbabilityReference() - Method in class com.aliasi.classify.ConditionalClassifierEvaluator

Returns the average over all test cases of the conditional probability of the response that matches the reference category.

averageLog2JointProbability(String, String) - Method in class com.aliasi.classify.JointClassifierEvaluator

Returns the average log (base 2) joint probability of the response category for cases of the specified reference category.

averageLog2JointProbabilityReference() - Method in class com.aliasi.classify.JointClassifierEvaluator

Returns the average over all test cases of the joint log (base 2) probability of the response that matches the reference category.

averagePrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the average of precisions at the true positive results.

averagePrecisionTest() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

averageRank(String, String) - Method in class com.aliasi.classify.RankedClassifierEvaluator

Returns the average rank of the specified response category for test cases with the specified reference category.

averageRankReference() - Method in class com.aliasi.classify.RankedClassifierEvaluator

Returns the average over all test samples of the rank of the the response that matches the reference category.

averageScore(String, String) - Method in class com.aliasi.classify.ScoredClassifierEvaluator

Returns the average score of the specified response category for test cases with the specified reference category.

averageScoreReference() - Method in class com.aliasi.classify.ScoredClassifierEvaluator

Returns the average over all test cases of the score of the response that matches the reference category.

AXIS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the axis attribute.

B

B - Variable in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

b() - Method in class com.aliasi.util.Pair

Return the second value of the pair.

B - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element b.

b() - Method in class com.aliasi.xml.XHtmlWriter

Start an b element with no attributes.

b(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an b element with the specified attributes.

b(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an b element with the specified attribute and value.

b(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an b element with the specified attributes and values.

b(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an b element with the specified attributes and values.

b(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an b element with the specified attributes and values.

b3ClusterF() - Method in class com.aliasi.cluster.ClusterScore

Returns the F₁ measure of the B³ precision and recall metrics with equal cluster weighting.

b3ClusterPrecision() - Method in class com.aliasi.cluster.ClusterScore

Returns the precision as defined by B³ metric with equal cluster weighting.

b3ClusterRecall() - Method in class com.aliasi.cluster.ClusterScore

Returns the recall as defined by B³ metric with equal cluster weighting.

b3ElementF() - Method in class com.aliasi.cluster.ClusterScore

Returns the F₁ measure of the B³ precision and recall metrics with equal element weighting.

b3ElementPrecision() - Method in class com.aliasi.cluster.ClusterScore

Returns the precision as defined by B³ metric with equal element weighting.

b3ElementRecall() - Method in class com.aliasi.cluster.ClusterScore

Returns the recall as defined by B³ metric with equal element weighting.

balanceParens() - Method in class com.aliasi.sentences.HeuristicSentenceModel

Returns true if this model does parenthesis balancing.

BARE_ARG_PREFIX - Static variable in class com.aliasi.util.AbstractCommand

The string prefixed before a number to indicate bare arguments.

bareArguments() - Method in class com.aliasi.util.AbstractCommand

Returns the array of bare arguments, in order, supplied on the command line.

BASE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element base.

base() - Method in class com.aliasi.xml.XHtmlWriter

Start an base element with no attributes.

base(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an base element with the specified attributes.

base(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an base element with the specified attribute and value.

base(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an base element with the specified attributes and values.

base(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an base element with the specified attributes and values.

base(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an base element with the specified attributes and values.

baseChunker() - Method in class com.aliasi.chunk.RescoringChunker

The base chunker that generates hypotheses to rescore.

BaseClassifier<E> - Interface in com.aliasi.classify

The BaseClassifier interface specifies a single method for first-best classification.

BaseClassifierEvaluator<E> - Class in com.aliasi.classify

A BaseClassifierEvaluator provides an evaluation harness for first-best classifiers.

BaseClassifierEvaluator(BaseClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.BaseClassifierEvaluator

Construct a classifier evaluator for the specified classifier that records results for the specified set of categories, storing cases or not based on the specified flag.

baseExtractor() - Method in class com.aliasi.features.FeatureExtractorFilter

Returns the contained feature extractor.

baseFeatureExtractors() - Method in class com.aliasi.features.AddFeatureExtractor

Returns an unmodifiable view of the list of base feature extractors for this additive feature extractor.

BASEFONT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element basefont.

basefont() - Method in class com.aliasi.xml.XHtmlWriter

Start an basefont element with no attributes.

basefont(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an basefont element with the specified attributes.

basefont(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an basefont element with the specified attribute and value.

basefont(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an basefont element with the specified attributes and values.

basefont(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an basefont element with the specified attributes and values.

basefont(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an basefont element with the specified attributes and values.

baseName(File) - Static method in class com.aliasi.util.Files

Returns prefix of the file's name, defined as the part of the name before the final period, or the whole name if there is no final period.

baseTokenizerFactory() - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory

Return the base tokenizer factory.

baseTokenizerFactory() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory

Return the base tokenizer factory used to generate the underlying tokens from which n-grams are generated.

basisDistribution() - Method in class com.aliasi.stats.MultinomialDistribution

Returns the multivariate distribution that forms the basis of this multinomial distribution.

bayesTopicEstimate(int[], int, int, int, Random) - Method in class com.aliasi.cluster.LatentDirichletAllocation

Return the Bayesian point estimate of the topic distribution for a document consisting of the specified tokens, using Gibbs sampling with the specified parameters.

BDO - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element bdo.

bdo() - Method in class com.aliasi.xml.XHtmlWriter

Start an bdo element with no attributes.

bdo(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an bdo element with the specified attributes.

bdo(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an bdo element with the specified attribute and value.

bdo(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an bdo element with the specified attributes and values.

bdo(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an bdo element with the specified attributes and values.

bdo(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an bdo element with the specified attributes and values.

BEGIN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec

Default prefix for begin tags, "B_".

BernoulliClassifier<E> - Class in com.aliasi.classify

A BernoulliClassifier provides a feature-based classifier where feature values are reduced to booleans based on a specified threshold.

BernoulliClassifier(FeatureExtractor<E>) - Constructor for class com.aliasi.classify.BernoulliClassifier

Construct a Bernoulli classifier with the specified feature extractor and the default feature activation threshold of 0.0.

BernoulliClassifier(FeatureExtractor<E>, double) - Constructor for class com.aliasi.classify.BernoulliClassifier

Construct a Bernoulli classifier with the specified feature extractor and specified feature activation threshold.

BernoulliClassifierTest - Class in com.aliasi.test.unit.classify

BernoulliClassifierTest() - Constructor for class com.aliasi.test.unit.classify.BernoulliClassifierTest

BernoulliConstant - Class in com.aliasi.stats

A BernoulliConstant implements a Bernoulli distribution with a constant probability of success.

BernoulliConstant(double) - Constructor for class com.aliasi.stats.BernoulliConstant

Construct a constant Bernoulli distribution with the specified success probability.

BernoulliConstantTest - Class in com.aliasi.test.unit.stats

BernoulliConstantTest() - Constructor for class com.aliasi.test.unit.stats.BernoulliConstantTest

BernoulliDistribution - Class in com.aliasi.stats

A BernoulliDistribution is a multivariate distribution with two outcomes, 0 (labeled "failure") and 1 (labeled "success").

BernoulliDistribution() - Constructor for class com.aliasi.stats.BernoulliDistribution

Construct a Bernoulli distribution.

bernoulliDistribution() - Method in class com.aliasi.stats.BinomialDistribution

Returns the underlying Bernoulli (two outcome) distribution underlying this binomial distribution.

BernoulliDistributionTest - Class in com.aliasi.test.unit.stats

BernoulliDistributionTest() - Constructor for class com.aliasi.test.unit.stats.BernoulliDistributionTest

BernoulliEstimator - Class in com.aliasi.stats

A BernoulliEstimator provides a maximum likelihood estimate of a Bernoulli distribution.

BernoulliEstimator() - Constructor for class com.aliasi.stats.BernoulliEstimator

Construct a Bernoulli estimator with zero counts.

BernoulliEstimatorTest - Class in com.aliasi.test.unit.stats

BernoulliEstimatorTest() - Constructor for class com.aliasi.test.unit.stats.BernoulliEstimatorTest

bestCategory() - Method in class com.aliasi.classify.Classification

Returns the best-scoring category.

BIG - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element big.

big() - Method in class com.aliasi.xml.XHtmlWriter

Start an big element with no attributes.

big(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an big element with the specified attributes.

big(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an big element with the specified attribute and value.

big(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an big element with the specified attributes and values.

big(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an big element with the specified attributes and values.

big(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an big element with the specified attributes and values.

BigVectorClassifier - Class in com.aliasi.classify

A BigVectorClassifier provides an efficient linear classifier implementation for large numbers of categories.

BigVectorClassifier(Vector[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier

Construct a big vector classifier with the specified term vectors, maximum number of results, and categories equal to the string representations of the category identifiers.

BigVectorClassifier(Vector[], String[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier

Construct a big vector classifier with the specified term vectors, categories, and maximum number of results.

BigVectorClassifierTest - Class in com.aliasi.test.unit.classify

BigVectorClassifierTest() - Constructor for class com.aliasi.test.unit.classify.BigVectorClassifierTest

BinaryLMClassifier - Class in com.aliasi.classify

A BinaryLMClassifier is a boolean dynamic language model classifier for use when there are two categories, but training data is only available for one of the categories.

BinaryLMClassifier(LanguageModel.Dynamic, double) - Constructor for class com.aliasi.classify.BinaryLMClassifier

Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.

BinaryLMClassifier(LanguageModel.Dynamic, double, String, String) - Constructor for class com.aliasi.classify.BinaryLMClassifier

Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.

BinaryLMClassifierTest - Class in com.aliasi.test.unit.classify

BinaryLMClassifierTest() - Constructor for class com.aliasi.test.unit.classify.BinaryLMClassifierTest

BinaryMap<E> - Class in com.aliasi.util

The BinaryMap class implements a map from objects to integer objects where the only value is the integer with value 1.

BinaryMap() - Constructor for class com.aliasi.util.BinaryMap

Construct a binary map with an initial capacity of zero.

BinaryMap(int) - Constructor for class com.aliasi.util.BinaryMap

Construct a binary map with the specified initial capacity.

BinaryMap(Set<E>) - Constructor for class com.aliasi.util.BinaryMap

Construct a binary map based on the specified set of positive values.

BinaryMapTest - Class in com.aliasi.test.unit.util

BinaryMapTest() - Constructor for class com.aliasi.test.unit.util.BinaryMapTest

BinomialDistribution - Class in com.aliasi.stats

A BinomialDistribution is a discrete distribution over the number of successes given a fixed number of Bernoulli trials.

BinomialDistribution(BernoulliDistribution, int) - Constructor for class com.aliasi.stats.BinomialDistribution

Construct a binomial distribution that samples from the specified Bernoulli distribution the specified number of times.

BinomialDistributionTest - Class in com.aliasi.test.unit.stats

BinomialDistributionTest() - Constructor for class com.aliasi.test.unit.stats.BinomialDistributionTest

BioTagChunkCodec - Class in com.aliasi.chunk

The BioTagChunkCodec implements a chunk to tag coder/decoder based on the BIO encoding scheme and a specified tokenizer factory.

BioTagChunkCodec() - Constructor for class com.aliasi.chunk.BioTagChunkCodec

Construct a BIO-encoded tag/chunk decoder with a null tokenizer that does not enforce consistency and uses the default begin, in, and out tags.

BioTagChunkCodec(TokenizerFactory, boolean) - Constructor for class com.aliasi.chunk.BioTagChunkCodec

Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set, and using the default being, in, and out tags.

BioTagChunkCodec(TokenizerFactory, boolean, String, String, String) - Constructor for class com.aliasi.chunk.BioTagChunkCodec

Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set.

BioTagChunkCodecTest - Class in com.aliasi.test.unit.chunk

BioTagChunkCodecTest() - Constructor for class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

BitInput - Class in com.aliasi.io

A BitInput wraps an underlying input stream to provide bit-level input.

BitInput(InputStream) - Constructor for class com.aliasi.io.BitInput

Constructs a bit input wrapping the specified input stream.

BitInputTest - Class in com.aliasi.test.unit.io

BitInputTest() - Constructor for class com.aliasi.test.unit.io.BitInputTest

BitOutput - Class in com.aliasi.io

A BitOutput wraps an underlying output stream to provide bit-level output.

BitOutput(OutputStream) - Constructor for class com.aliasi.io.BitOutput

Construct a bit output wrapping the specified output stream.

BitOutputTest - Class in com.aliasi.test.unit.io

BitOutputTest() - Constructor for class com.aliasi.test.unit.io.BitOutputTest

BitTrieReader - Class in com.aliasi.lm

A BitTrieReader provides a trie reader that wraps a bit-level input.

BitTrieReader(BitInput) - Constructor for class com.aliasi.lm.BitTrieReader

Construct a bit trie reader from the specified bit input.

BitTrieWriter - Class in com.aliasi.lm

A BitTrieWriter provides a trie writer that wraps a bit-level output.

BitTrieWriter(BitOutput) - Constructor for class com.aliasi.lm.BitTrieWriter

Construct a bit trie writer from the specified bit output with the specified maximum n-gram.

BLOCKQUOTE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element blockquote.

blockquote() - Method in class com.aliasi.xml.XHtmlWriter

Start an blockquote element with no attributes.

blockquote(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an blockquote element with the specified attributes.

blockquote(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an blockquote element with the specified attribute and value.

blockquote(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an blockquote element with the specified attributes and values.

blockquote(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an blockquote element with the specified attributes and values.

blockquote(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an blockquote element with the specified attributes and values.

BODY - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element body.

body() - Method in class com.aliasi.xml.XHtmlWriter

Start an body element with no attributes.

body(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an body element with the specified attributes.

body(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an body element with the specified attribute and value.

body(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an body element with the specified attributes and values.

body(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an body element with the specified attributes and values.

body(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an body element with the specified attributes and values.

BooleanMatcherAdapter - Class in com.aliasi.coref

Provides a means of implementing a Matcher that returns a constant value if a boolean condition is satisifed and the no-match score otherwise.

BooleanMatcherAdapter(int) - Constructor for class com.aliasi.coref.BooleanMatcherAdapter

Construct a boolean matcher adapter that returns the specified score.

BORDER - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the border attribute.

BOUNDARY_TOKEN - Static variable in class com.aliasi.lm.TokenizedLM

The symbol used for boundaries in the counter, -2.

boundaryIndices(String[], String[]) - Method in class com.aliasi.sentences.AbstractSentenceModel

Returns an array of indices of sentence-final tokens.

boundaryIndices(String[], String[], int, int) - Method in class com.aliasi.sentences.AbstractSentenceModel

Returns an array of indices of sentence-final tokens for the slice of the token and whitespace arrays specified.

boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.AbstractSentenceModel

Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.

boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.HeuristicSentenceModel

Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.

boundaryIndices(String[], String[]) - Method in interface com.aliasi.sentences.SentenceModel

Returns an array of indices of sentence-final tokens.

boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in interface com.aliasi.sentences.SentenceModel

Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.

BoundedFeatureExtractor<E> - Class in com.aliasi.features

A BoundedFeatureExtractor provides a lower-bound and upper-bound on feature values between which all values from a contained base extractor are bounded.

BoundedFeatureExtractor(FeatureExtractor<? super E>, double, double) - Constructor for class com.aliasi.features.BoundedFeatureExtractor

Construct a bounded feature extractor that bounds the feature values produced by the specified extractor to be within the specified minimum and maximum values.

BoundedFeatureExtractorTest - Class in com.aliasi.test.unit.features

BoundedFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

BoundedPriorityQueue<E> - Class in com.aliasi.util

A BoundedPriorityQueue implements a priority queue with an upper bound on the number of elements.

BoundedPriorityQueue(Comparator<? super E>, int) - Constructor for class com.aliasi.util.BoundedPriorityQueue

Construct a bounded priority queue which uses the specified comparator to order elements and allows up to the specified maximum number of elements.

BoundedPriorityQueueTest - Class in com.aliasi.test.unit.util

BoundedPriorityQueueTest() - Constructor for class com.aliasi.test.unit.util.BoundedPriorityQueueTest

BR - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element br.

br() - Method in class com.aliasi.xml.XHtmlWriter

Start an br element with no attributes.

br(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an br element with the specified attributes.

br(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an br element with the specified attribute and value.

br(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an br element with the specified attributes and values.

br(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an br element with the specified attributes and values.

br(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an br element with the specified attributes and values.

bufferNext() - Method in class com.aliasi.test.unit.util.IteratorsTest.ListBufferedIterator

bufferNext() - Method in class com.aliasi.util.Iterators.Buffered

Returns the next object for this iterator, or null if there are no more objects.

BUTTON - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element button.

button() - Method in class com.aliasi.xml.XHtmlWriter

Start an button element with no attributes.

button(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an button element with the specified attributes.

button(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an button element with the specified attribute and value.

button(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an button element with the specified attributes and values.

button(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an button element with the specified attributes and values.

button(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an button element with the specified attributes and values.

byteAsUnsigned(byte) - Static method in class com.aliasi.util.Math

Returns the integer value of reading the specified byte as an unsigned value.

bytesToHex(byte[]) - Static method in class com.aliasi.util.Strings

Returns a hexadecimal string-based representation of the specified byte array.

C

C - Variable in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

cache() - Method in class com.aliasi.features.CacheFeatureExtractor

Returns the cache for this cached feature extractor.

CachedMention - Class in com.aliasi.coref

A CachedMention stores all of the retun values specified by the Mention interface.

CachedMention(String, String, Set<String>, String[], String, boolean) - Constructor for class com.aliasi.coref.CachedMention

Construct a cached mention from the specified return values.

CachedMentionTest - Class in com.aliasi.test.unit.coref

CachedMentionTest() - Constructor for class com.aliasi.test.unit.coref.CachedMentionTest

CacheFeatureExtractor<E> - Class in com.aliasi.features

A CacheFeatureExtractor uses a cache to store a mapping from objects to their feature vector maps.

CacheFeatureExtractor(FeatureExtractor<? super E>, Map<E, Map<String, ? extends Number>>) - Constructor for class com.aliasi.features.CacheFeatureExtractor

Construct a cached feature extractor that caches the results of the specified extractor using the specified cache.

CacheFeatureExtractorTest - Class in com.aliasi.test.unit.features

CacheFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.CacheFeatureExtractorTest

capitalized(char[]) - Static method in class com.aliasi.util.Strings

Returns true if the first character in the specified array is an upper case letter and all subsequent characters are lower case letters.

CAPTION - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element caption.

caption() - Method in class com.aliasi.xml.XHtmlWriter

Start an caption element with no attributes.

caption(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an caption element with the specified attributes.

caption(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an caption element with the specified attribute and value.

caption(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an caption element with the specified attributes and values.

caption(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an caption element with the specified attributes and values.

caption(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an caption element with the specified attributes and values.

CASE_RESTORING - Static variable in class com.aliasi.spell.CompiledSpellChecker

A weighted edit distance ordered by similarity that treats case variants as zero cost and all other edits as infinite cost.

caseAccuracy() - Method in class com.aliasi.tag.TaggerEvaluator

Return the accuracy at the entire case level.

cases() - Method in class com.aliasi.chunk.ChunkingEvaluation

Return the set of cases consisting of pairs of reference and response chunkings.

caseSensitive() - Method in class com.aliasi.dict.ExactDictionaryChunker

Returns true if this dictionary chunker is case sensitive.

categories() - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns a copy of the the categories for which this evaluator stores results.

categories() - Method in class com.aliasi.classify.BernoulliClassifier

Returns a copy of the list the categories for this classifier.

categories() - Method in class com.aliasi.classify.ConfusionMatrix

Return a copy of the array of categories for this confusion matrix.

categories() - Method in class com.aliasi.classify.KnnClassifier

Returns a copy of he current list of categories for this classifier.

categories() - Method in class com.aliasi.classify.LMClassifier

Returns the array of categories for this classifier.

categories() - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Return an unmodifiable view of the underlying set of categories seen in the training data.

categories() - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer

Returns a copy of the array of categories used by this categorizer.

categories() - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer

Returns a copy of the array of strings representing all the categories produced by this categorizer.

categories() - Method in interface com.aliasi.tokenizer.TokenCategorizer

Returns an array of all available categories produced by this categorizer.

categorize(String) - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer

Returns the category of the specified token.

categorize(String) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer

Returns the type of a token, based on its structure or other information.

categorize(String) - Method in interface com.aliasi.tokenizer.TokenCategorizer

Returns the category string for the specified token.

CATEGORIZER - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer

This is a constant Indo-European token categorizer.

category(int) - Method in class com.aliasi.classify.RankedClassification

Returns the category with the specified rank in the classification.

category() - Method in class com.aliasi.dict.DictionaryEntry

Returns the category for this dictionary entry.

categoryDistribution() - Method in class com.aliasi.classify.LMClassifier

Returns a multivariate distribution over categories for this classifier.

categoryEntryIt(C) - Method in class com.aliasi.dict.AbstractDictionary

Returns an iterator over the dictionary entries with the specified category.

categoryEntryIt(C) - Method in interface com.aliasi.dict.Dictionary

Returns an iterator over the dictionary entries with the specified category.

categoryEntryList(C) - Method in class com.aliasi.dict.AbstractDictionary

Returns the dictionary entries with the specified category.

categoryEntryList(C) - Method in interface com.aliasi.dict.Dictionary

Returns the dictionary entries with the specified category.

categorySet() - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns a set of categories for this classifier.

categorySymbols() - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns a copy of the category symbols used by this classifier in the same order as used by the underlying logistic regression model.

cauchy(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior

Returns the Cauchy prior with the specified prior squared scales for the dimensions.

cauchy(double[]) - Static method in class com.aliasi.stats.RegressionPrior

Returns the Cauchy prior for the specified squared scales.

CDATA_ATTS_TYPE - Static variable in class com.aliasi.xml.SimpleElementHandler

The type of character data attributes.

CELLPADDING - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the cellpadding attribute.

CELLSPACING - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the cellspacing attribute.

CENTER - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element center.

center() - Method in class com.aliasi.xml.XHtmlWriter

Start an center element with no attributes.

center(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an center element with the specified attributes.

center(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an center element with the specified attribute and value.

center(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an center element with the specified attributes and values.

center(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an center element with the specified attributes and values.

center(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an center element with the specified attributes and values.

ChainCrf<E> - Class in com.aliasi.crf

The ChainCrf<E> class implements linear chain conditional random field decoding and estimation for input token sequences of type E.

ChainCrf(String[], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf

Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.

ChainCrf(String[], boolean[], boolean[], boolean[][], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf

Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.

ChainCrfChunker - Class in com.aliasi.crf

A ChainCrfChunker implements chunking based on a chain CRF over string sequences, a tokenizer factory, and a tag to chunk coder/decoder.

ChainCrfChunker(ChainCrf<String>, TokenizerFactory, TagChunkCodec) - Constructor for class com.aliasi.crf.ChainCrfChunker

Construct a chunker based on the specified chain conditional random field, tokenizer factory and tag-chunk coder/decoder.

ChainCrfChunkerTest - Class in com.aliasi.test.unit.crf

ChainCrfChunkerTest() - Constructor for class com.aliasi.test.unit.crf.ChainCrfChunkerTest

ChainCrfFeatureExtractor<E> - Interface in com.aliasi.crf

The ChainCrfFeatureExtractor interface specifies a method for conditional random fields to extract the necessary node and edge features for estimation and tagging.

ChainCrfFeatures<E> - Class in com.aliasi.crf

The ChainCrfFeatures interface specifies methods for extracting node and edge features for a conditional random field.

ChainCrfFeatures(List<E>, List<String>) - Constructor for class com.aliasi.crf.ChainCrfFeatures

Construct a chain CRF feature set for the specified lists of input tokens and possible output tags.

ChainCrfTest - Class in com.aliasi.test.unit.crf

ChainCrfTest() - Constructor for class com.aliasi.test.unit.crf.ChainCrfTest

CHAR - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the char attribute.

characters() - Method in class com.aliasi.tag.StringTagging

Returns the characters underlying this string tagging.

characters(char[], int, int) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

characters(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated or ignored.

characters(char[], int, int) - Method in class com.aliasi.xml.GroupCharactersFilter

Adds the characters to the character accumulator.

characters(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

characters(char[], int, int) - Method in class com.aliasi.xml.SAXWriter

Prints the characters in the specified range.

characters(String) - Method in class com.aliasi.xml.SimpleElementHandler

Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.

characters(char[]) - Method in class com.aliasi.xml.SimpleElementHandler

Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).

characters(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.

characters(DefaultHandler, char[]) - Static method in class com.aliasi.xml.SimpleElementHandler

Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).

characters(char[], int, int) - Method in class com.aliasi.xml.TextAccumulatorHandler

Adds the specified character slice to the string buffer.

characters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter

Handle character content, delegating unfiltered characters to the contained handler, and delegating filtered characters to TextContentFilter.filteredCharacters(char[],int,int).

charactersFollowing(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter

Returns the array of characters that have been observed following the specified character slice in unicode order.

charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter

charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

CharacterTokenCategorizer - Class in com.aliasi.tokenizer

Returns a category for tokens made up out of a single character.

CharacterTokenizerFactory - Class in com.aliasi.tokenizer

A CharacterTokenizerFactory considers each non-whitespace character in the input to be a distinct token.

CharacterTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

CharacterTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.CharacterTokenizerFactoryTest

CharLmHmmChunker - Class in com.aliasi.chunk

A CharLmHmmChunker employs a hidden Markov model estimator and tokenizer factory to learn a chunker.

CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator) - Constructor for class com.aliasi.chunk.CharLmHmmChunker

Construct a CharLmHmmChunker from the specified tokenizer factory and hidden Markov model estimator.

CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator, boolean) - Constructor for class com.aliasi.chunk.CharLmHmmChunker

Construct a CharLmHmmChunker from the specified tokenizer factory, HMM estimator and tag-smoothing flag.

CharLmHmmChunkerTest - Class in com.aliasi.test.unit.chunk

CharLmHmmChunkerTest() - Constructor for class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

CharLmRescoringChunker - Class in com.aliasi.chunk

A CharLmRescoringChunker provides a long-distance character language model-based chunker that operates by rescoring the output of a contained character language model HMM chunker.

CharLmRescoringChunker(TokenizerFactory, int, int, int, double) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker

Construct a character language model rescoring chunker based on the specified components.

CharLmRescoringChunker(TokenizerFactory, int, int, int, double, boolean) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker

Construct a character language model rescoring chunker based on the specified components.

CharLmRescoringChunkerTest - Class in com.aliasi.test.unit.chunk

CharLmRescoringChunkerTest() - Constructor for class com.aliasi.test.unit.chunk.CharLmRescoringChunkerTest

CHAROFF - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the charoff attribute.

CharSeqCounter - Interface in com.aliasi.lm

A CharSeqCounter counter provides counts for sequences of characters.

CharSeqMultiCounter - Class in com.aliasi.lm

A CharSeqMultiCounter combines the counts from a pair of character sequence counters.

CharSeqMultiCounter(CharSeqCounter[]) - Constructor for class com.aliasi.lm.CharSeqMultiCounter

Construct a character sequence counter from the specified array of counters.

CharSeqMultiCounter(CharSeqCounter, CharSeqCounter) - Constructor for class com.aliasi.lm.CharSeqMultiCounter

Construct a multi-counter from the specified pair of counters.

CharSeqMultiCounterTest - Class in com.aliasi.test.unit.lm

CharSeqMultiCounterTest() - Constructor for class com.aliasi.test.unit.lm.CharSeqMultiCounterTest

charSequence() - Method in class com.aliasi.chunk.ChunkAndCharSeq

Return the underlying character sequence for this chunk.

charSequence() - Method in interface com.aliasi.chunk.Chunking

Returns the character sequence underlying this chunking.

charSequence() - Method in class com.aliasi.chunk.ChunkingImpl

Returns the character sequence underlying this chunking.

CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the charset attribute.

charsetName() - Method in class com.aliasi.xml.SAXWriter

Returns the name of the character set being used by this writer.

CharSuffixArray - Class in com.aliasi.suffixarray

A CharSuffixArray implements a suffix array of characters.

CharSuffixArray(String) - Constructor for class com.aliasi.suffixarray.CharSuffixArray

Construct a suffix array from the specified string, with no bound on suffix length.

CharSuffixArray(String, int) - Constructor for class com.aliasi.suffixarray.CharSuffixArray

Construct a suffix array from the specified string, bounding comparisons for sorting by the specified maximum suffix length.

CharSuffixArrayTest - Class in com.aliasi.test.unit.suffixarray

CharSuffixArrayTest() - Constructor for class com.aliasi.test.unit.suffixarray.CharSuffixArrayTest

checkArgsStartEnd(char[], int, int) - Static method in class com.aliasi.util.Strings

Throws an exception if the start and end plus one indices are not in the range for the specified array of characters.

CHECKED - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the checked attribute.

checkParameterImplication(String, String) - Method in class com.aliasi.util.AbstractCommand

Throws an illegal argument exception if the first parameter is defined in the command the second parameter is not.

chiSquared() - Method in class com.aliasi.classify.ConfusionMatrix

Returns Pearson's C₂ independence test statistic for this matrix.

chiSquared() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the χ² value.

chiSquared(int[]) - Method in class com.aliasi.stats.MultinomialDistribution

Returns the chi-squared statistic for rejecting the null hypothesis that the specified samples were generated by this distribution.

chiSquaredDegreesOfFreedom() - Method in class com.aliasi.classify.ConfusionMatrix

Return the number of degrees of freedom of this confusion matrix for the χ² statistic.

chiSquaredIndependence(int[]) - Method in class com.aliasi.lm.TokenizedLM

Returns the maximum value of Pearson's C₂ independence test statistic resulting from splitting the specified n-gram in half to derive a contingency matrix.

chiSquaredIndependence(double, double, double, double) - Static method in class com.aliasi.stats.Statistics

Returns Pearson's C₂ goodness-of-fit statistic for independence over the specified binary contingency matrix.

chiSquaredIndependence(double[][]) - Static method in class com.aliasi.stats.Statistics

Returns the value of Pearson's C₂ goodness of fit statistic for independence over the specified contingency matrix.

choiceLogProbs(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser

Return an array of (natural) log choice probabilities corresponding to the input array of choices.

choiceProbs(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser

Return an array of choice probabilities corresponding to the input array of choices.

choose(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser

Returns the most likely choice among the choices in the specified array of vectors.

chooser() - Method in class com.aliasi.dca.DiscreteObjectChooser

Returns the discrete chooser on which this object chooser is based.

Chunk - Interface in com.aliasi.chunk

The Chunk interface specifies a slice of a character sequence, a chunk type and a chunk score.

chunk() - Method in class com.aliasi.chunk.ChunkAndCharSeq

Return the chunk underlying this compositie chunk and character sequence.

chunk(CharSequence) - Method in interface com.aliasi.chunk.Chunker

Return the chunking of the specified character sequence.

chunk(char[], int, int) - Method in interface com.aliasi.chunk.Chunker

Return the chunking of the specified character slice.

chunk(char[], int, int) - Method in class com.aliasi.chunk.HmmChunker

Returns a chunking of the specified character slice.

chunk(CharSequence) - Method in class com.aliasi.chunk.HmmChunker

Returns a chunking of the specified character sequence.

chunk(CharSequence) - Method in class com.aliasi.chunk.RegExChunker

Return the chunking of the specified character sequence.

chunk(char[], int, int) - Method in class com.aliasi.chunk.RegExChunker

Return the chunking of the specified character slice.

chunk(CharSequence) - Method in class com.aliasi.chunk.RescoringChunker

Returns the first-best chunking for the specified character sequence.

chunk(char[], int, int) - Method in class com.aliasi.chunk.RescoringChunker

Returns the first-best chunking for the specified character slice.

chunk(CharSequence) - Method in class com.aliasi.chunk.TokenShapeChunker

Return the set of named-entity chunks derived from the uderlying decoder over the tokenization of the specified character sequence.

chunk(char[], int, int) - Method in class com.aliasi.chunk.TokenShapeChunker

Return the set of named-entity chunks derived from the underlying decoder over the tokenization of the specified character slice.

chunk(CharSequence) - Method in class com.aliasi.crf.ChainCrfChunker

chunk(char[], int, int) - Method in class com.aliasi.crf.ChainCrfChunker

chunk(CharSequence) - Method in class com.aliasi.dict.ApproxDictionaryChunker

Return the approximate dictionary-based chunking for the specified character sequence.

chunk(char[], int, int) - Method in class com.aliasi.dict.ApproxDictionaryChunker

Return the approximate dictionary-based chunking for the specified character sequence.

chunk(CharSequence) - Method in class com.aliasi.dict.ExactDictionaryChunker

Returns the chunking for the specified character sequence.

chunk(char[], int, int) - Method in class com.aliasi.dict.ExactDictionaryChunker

Returns the chunking for the specified character slice.

chunk(CharSequence) - Method in class com.aliasi.sentences.SentenceChunker

Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.

chunk(char[], int, int) - Method in class com.aliasi.sentences.SentenceChunker

Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.

chunk(CharSequence) - Method in class com.aliasi.tokenizer.TokenChunker

Return the chunking produced by tokenizing the specified character sequence.

chunk(char[], int, int) - Method in class com.aliasi.tokenizer.TokenChunker

Return the chunking produced by tokenizing the specified character array slice.

ChunkAndCharSeq - Class in com.aliasi.chunk

The ChunkAndCharSeq is an immutable composite of a chunk and a character sequence.

ChunkAndCharSeq(Chunk, CharSequence) - Constructor for class com.aliasi.chunk.ChunkAndCharSeq

Construct a composite of the specified chunk and sequence.

ChunkAndCharSeqTest - Class in com.aliasi.test.unit.chunk

ChunkAndCharSeqTest() - Constructor for class com.aliasi.test.unit.chunk.ChunkAndCharSeqTest

Chunker - Interface in com.aliasi.chunk

The Chunker interface specifies methods for returning a chunking given a character sequence or character slice.

chunker() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns the underlying chunker for this evaluator.

ChunkerEvaluator - Class in com.aliasi.chunk

The ChunkerEvaulator class provides an evaluation framework for chunkers.

ChunkerEvaluator(Chunker) - Constructor for class com.aliasi.chunk.ChunkerEvaluator

Construct an evaluator for the specified chunker.

ChunkerFeatureExtractor - Class in com.aliasi.features

A ChunkerFeatureExtractor implements a feature extractor for character sequences based on a specified chunker.

ChunkerFeatureExtractor(Chunker, boolean) - Constructor for class com.aliasi.features.ChunkerFeatureExtractor

Construct a new chunker feature extractor based on the specified chunker, including the phrases extracted if the specified flag is true.

ChunkerFeatureExtractorTest - Class in com.aliasi.test.unit.features

ChunkerFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.ChunkerFeatureExtractorTest

ChunkFactory - Class in com.aliasi.chunk

The ChunkFactory provides static factory methods for creating chunks from components.

ChunkFactoryTest - Class in com.aliasi.test.unit.chunk

ChunkFactoryTest() - Constructor for class com.aliasi.test.unit.chunk.ChunkFactoryTest

Chunking - Interface in com.aliasi.chunk

The Chunking interface specifies a set of chunks over a shared underlying character sequence.

ChunkingEvaluation - Class in com.aliasi.chunk

A ChunkingEvaluation stores and reports the results of evaluating response chunkings against reference chunkings.

ChunkingEvaluation() - Constructor for class com.aliasi.chunk.ChunkingEvaluation

Construct a chunking evaluation.

chunkingEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation

Return the chunking evaluation for this sentence evaluation.

ChunkingImpl - Class in com.aliasi.chunk

A ChunkingImpl provides a mutable, set-based implementation of the chunking interface.

ChunkingImpl(CharSequence) - Constructor for class com.aliasi.chunk.ChunkingImpl

Constructs a chunking implementation to hold chunks over the specified character sequence.

ChunkingImpl(char[], int, int) - Constructor for class com.aliasi.chunk.ChunkingImpl

Construct a chunking implementation to hold chunks over the specified character slice.

ChunkingImplTest - Class in com.aliasi.test.unit.chunk

ChunkingImplTest() - Constructor for class com.aliasi.test.unit.chunk.ChunkingImplTest

chunkingToStringTagging(TagChunkCodec, ObjectHandler<Chunking>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters

Return the string tagging handler that converts string taggings to chunkings.

chunkingToTagging(TagChunkCodec, ObjectHandler<Chunking>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters

Returns the tagging handler that converts taggings to chunkings using the specified codec.

chunkLM(String) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker

Returns the sequence language model for chunks of the specified type.

chunkSet() - Method in interface com.aliasi.chunk.Chunking

Returns the chunks for this chunking.

chunkSet() - Method in class com.aliasi.chunk.ChunkingImpl

Return an unmodifiable view of the set of chunks for this chunking.

ChunkTest - Class in com.aliasi.test.unit.chunk

ChunkTest() - Constructor for class com.aliasi.test.unit.chunk.ChunkTest

CITE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element cite.

cite() - Method in class com.aliasi.xml.XHtmlWriter

Start an cite element with no attributes.

cite(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an cite element with the specified attributes.

cite(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an cite element with the specified attribute and value.

cite(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an cite element with the specified attributes and values.

cite(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an cite element with the specified attributes and values.

cite(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an cite element with the specified attributes and values.

CITE_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the cite attribute.

CLASS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the class attribute.

CLASSID - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the classid attribute.

Classification - Class in com.aliasi.classify

A Classification provides a first-best category.

Classification(String) - Constructor for class com.aliasi.classify.Classification

Construct a classification with the specified first-best category.

Classified<E> - Class in com.aliasi.classify

A Classified represents an object that has been classified with a first-best classification.

Classified(E, Classification) - Constructor for class com.aliasi.classify.Classified

Construct a classified object consisting of the specified object and classification.

classifier() - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the classifier for this evaluator.

classifier() - Method in class com.aliasi.classify.ConditionalClassifierEvaluator

Return the classifier being evaluated.

classifier() - Method in class com.aliasi.classify.JointClassifierEvaluator

Return the classifier being evaluated.

classifier() - Method in class com.aliasi.classify.RankedClassifierEvaluator

Return the classifier being evaluated.

classifier() - Method in class com.aliasi.classify.ScoredClassifierEvaluator

Return the classifier being evaluated.

classify(E) - Method in interface com.aliasi.classify.BaseClassifier

Returns the first-best classification for the specified input.

classify(E) - Method in class com.aliasi.classify.BernoulliClassifier

Classify the specified input using this Bernoulli classifier.

classify(Vector) - Method in class com.aliasi.classify.BigVectorClassifier

Return a scored classification consisting of the top results for the specified vector input.

classify(E) - Method in interface com.aliasi.classify.ConditionalClassifier

Returns the n-best conditional probability classification for the specified input.

classify(E) - Method in interface com.aliasi.classify.JointClassifier

Returns the n-best joint probability classification for the specified input.

classify(E) - Method in class com.aliasi.classify.KnnClassifier

Return the k-nearest-neighbor classification result for the specified input object.

classify(CharSequence) - Method in class com.aliasi.classify.LMClassifier

Returns the joint classification of the specified character sequence.

classify(E) - Method in class com.aliasi.classify.LogisticRegressionClassifier

Return the conditional classification of the specified object using logistic regression classification.

classify(E) - Method in class com.aliasi.classify.PerceptronClassifier

Return the scored classification for the specified input.

classify(E) - Method in interface com.aliasi.classify.RankedClassifier

Return the n-best classification of the specified object.

classify(E) - Method in interface com.aliasi.classify.ScoredClassifier

Returns the n-best scored classification for the specified input.

classify(CharSequence) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Return the classification of the specified character sequence.

classify(Vector) - Method in class com.aliasi.stats.LogisticRegression

Returns an array of conditional probabilities indexed by outcomes for the specified input vector.

classify(Vector, double[]) - Method in class com.aliasi.stats.LogisticRegression

Fills the specified array with the conditional probabilities indexed by outcomes for the specified input vector.

classifyFeatures(Map<String, ? extends Number>) - Method in class com.aliasi.classify.LogisticRegressionClassifier

Return the conditional classification of a feature map using this classifier.

classifyJoint(char[], int, int) - Method in class com.aliasi.classify.LMClassifier

A convenience method returning a joint classification over a character array slice.

classifyVector(Vector) - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns the classification of the specified vector using the logistic regression model underlying this classifier.

clear() - Method in class com.aliasi.symbol.MapSymbolTable

Clears all of the symbols from the symbol table.

clear() - Method in interface com.aliasi.symbol.SymbolTable

Removes all the symbols from the symbol table.

clear() - Method in class com.aliasi.symbol.SymbolTableCompiler

Throws an unsupported operation exception.

clear() - Method in class com.aliasi.util.BinaryMap

Removes all of the mappings from this map.

clear() - Method in class com.aliasi.util.BoundedPriorityQueue

Removes all elements from this queue.

clear() - Method in class com.aliasi.util.CompactHashSet

Remove all of the elements from this set.

clear() - Method in class com.aliasi.util.FastCache

Removes all entries from this cache.

clear() - Method in class com.aliasi.util.ShortPriorityQueue

Removes all the elements from the priority queue.

clearSynonyms() - Method in class com.aliasi.coref.matchers.SynonymMatch

Removes all synonym pairs from this synonym matcher.

close() - Method in class com.aliasi.io.BitInput

Closes this input stream and releases associated resources.

close() - Method in class com.aliasi.io.BitOutput

Closes underlying output stream and releases any resources associated with the stream.

close() - Method in class com.aliasi.io.Reporter

Close this reporter and free all resources associated with it.

closeInputSource(InputSource) - Static method in class com.aliasi.util.Streams

Close the specified input source.

closeInputStream(InputStream) - Static method in class com.aliasi.util.Streams

Deprecated.

Use Streams.closeQuietly(Closeable) instead.

closeOutputStream(OutputStream) - Static method in class com.aliasi.util.Streams

Deprecated.

Use Streams.closeQuietly(Closeable) instead.

closeQuietly(Closeable) - Static method in class com.aliasi.util.Streams

Closes the closeable without raising exceptions.

closeReader(Reader) - Static method in class com.aliasi.util.Streams

Deprecated.

Use Streams.closeQuietly(Closeable) instead.

closeWriter(Writer) - Static method in class com.aliasi.util.Streams

Deprecated.

Use Streams.closeQuietly(Closeable) instead.

cluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer

Returns the clustering of the specified elements.

cluster(Set<? extends E>) - Method in interface com.aliasi.cluster.Clusterer

Return a clustering of the specified set of elements.

cluster(Set<? extends E>) - Method in class com.aliasi.cluster.KMeansClusterer

Return a k-means clustering of the specified set of elements using a freshly generated random number generator without intermediate reporting.

cluster(Set<? extends E>, Random, Reporter) - Method in class com.aliasi.cluster.KMeansClusterer

Return the k-means clustering for the specified set of elements, using the specified random number generator, sending progress reports to the specified reporter.

Clusterer<E> - Interface in com.aliasi.cluster

The Clusterer interface defines a means of clustering a set of input elements Typically, the clusters returned by a clusterer will form a partition of the input elements.

ClusterScore<E> - Class in com.aliasi.cluster

A ClusterScore provides a range of cluster scoring metrics for reference partitions versus response partitions.

ClusterScore(Set<? extends Set<? extends E>>, Set<? extends Set<? extends E>>) - Constructor for class com.aliasi.cluster.ClusterScore

Construct a cluster score object from the specified reference and response partitions.

ClusterScoreTest - Class in com.aliasi.test.unit.cluster

ClusterScoreTest() - Constructor for class com.aliasi.test.unit.cluster.ClusterScoreTest

CODE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element code.

code() - Method in class com.aliasi.xml.XHtmlWriter

Start an code element with no attributes.

code(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an code element with the specified attributes.

code(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an code element with the specified attribute and value.

code(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an code element with the specified attributes and values.

code(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an code element with the specified attributes and values.

code(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an code element with the specified attributes and values.

CODEBASE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the codebase attribute.

codec() - Method in class com.aliasi.crf.ChainCrfChunker

Returns the tag/chunk coder/decoder for this chunker.

CODETYPE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the codetype attribute.

coefficients() - Method in class com.aliasi.crf.ChainCrf

Return the coefficient vectors for this CRF.

coefficients() - Method in class com.aliasi.dca.DiscreteChooser

Return an unmodifiable view of the coefficients underlying this discrete chooser.

COL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element col.

col() - Method in class com.aliasi.xml.XHtmlWriter

Start an col element with no attributes.

col(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an col element with the specified attributes.

col(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an col element with the specified attribute and value.

col(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an col element with the specified attributes and values.

col(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an col element with the specified attributes and values.

col(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an col element with the specified attributes and values.

COLGROUP - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element colgroup.

colgroup() - Method in class com.aliasi.xml.XHtmlWriter

Start an colgroup element with no attributes.

colgroup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an colgroup element with the specified attributes.

colgroup(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an colgroup element with the specified attribute and value.

colgroup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an colgroup element with the specified attributes and values.

colgroup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an colgroup element with the specified attributes and values.

colgroup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an colgroup element with the specified attributes and values.

CollectionUtils - Class in com.aliasi.util

The CollectionUtils class provides static utility methods for dealing with Java collections.

CollectionUtilsTest - Class in com.aliasi.test.unit.util

CollectionUtilsTest() - Constructor for class com.aliasi.test.unit.util.CollectionUtilsTest

collocationSet(int, int, int) - Method in class com.aliasi.lm.TokenizedLM

Returns an array of collocations in order of confidence that their token sequences are not independent.

COLS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the cols attribute.

COLSPAN - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the colspan attribute.

columnVector(int) - Method in class com.aliasi.matrix.AbstractMatrix

Returns the specified column of this matrix.

columnVector(int) - Method in interface com.aliasi.matrix.Matrix

Returns the vector of values in the specified column.

com.aliasi.chunk - package com.aliasi.chunk

Classes for extracting meaningful chunks (spans) of text.

com.aliasi.classify - package com.aliasi.classify

Classes for classifying data and evaluation.

com.aliasi.cluster - package com.aliasi.cluster

Classes for clustering data and evaluation.

com.aliasi.coref - package com.aliasi.coref

Classes for determining entity coreference within documents.

com.aliasi.coref.matchers - package com.aliasi.coref.matchers

Classes for matching and killing functions.

com.aliasi.corpus - package com.aliasi.corpus

Classes for parsing and handling various corpora.

com.aliasi.crf - package com.aliasi.crf

Classes and interfaces for conditional random fields.

com.aliasi.dca - package com.aliasi.dca

Classes for fitting and running discrete choice analysis (DCA) models.

com.aliasi.dict - package com.aliasi.dict

Classes for handling dictionaries.

com.aliasi.features - package com.aliasi.features

Classes for extracting feature vectors from objects and parsing objects for feature handlers.

com.aliasi.hmm - package com.aliasi.hmm

Classes for estimating and decoding hidden Markov models.

com.aliasi.io - package com.aliasi.io

Classes to handle input, output, file selection, and logging.

com.aliasi.lm - package com.aliasi.lm

Classes for character- and token-based language models.

com.aliasi.matrix - package com.aliasi.matrix

Classes for matrices and vectors.

com.aliasi.sentences - package com.aliasi.sentences

Classes for sentence-boundary detection.

com.aliasi.spell - package com.aliasi.spell

Classes for spelling correction and edit distance.

com.aliasi.stats - package com.aliasi.stats

Classes for handling basic statical distributions and estimators.

com.aliasi.suffixarray - package com.aliasi.suffixarray

Classes for spelling correction and edit distance.

com.aliasi.symbol - package com.aliasi.symbol

Classes for string-based symbol tables.

com.aliasi.tag - package com.aliasi.tag

Classes and interfaces for sequence tagging, including evaluators.

com.aliasi.test.unit - package com.aliasi.test.unit

Classes providing extra functionality for unit testing on top of JUnit.

com.aliasi.test.unit.chunk - package com.aliasi.test.unit.chunk

com.aliasi.test.unit.classify - package com.aliasi.test.unit.classify

com.aliasi.test.unit.cluster - package com.aliasi.test.unit.cluster

com.aliasi.test.unit.coref - package com.aliasi.test.unit.coref

com.aliasi.test.unit.coref.matchers - package com.aliasi.test.unit.coref.matchers

com.aliasi.test.unit.corpus - package com.aliasi.test.unit.corpus

com.aliasi.test.unit.crf - package com.aliasi.test.unit.crf

com.aliasi.test.unit.dca - package com.aliasi.test.unit.dca

com.aliasi.test.unit.dict - package com.aliasi.test.unit.dict

com.aliasi.test.unit.features - package com.aliasi.test.unit.features

com.aliasi.test.unit.hmm - package com.aliasi.test.unit.hmm

com.aliasi.test.unit.io - package com.aliasi.test.unit.io

com.aliasi.test.unit.lm - package com.aliasi.test.unit.lm

com.aliasi.test.unit.matrix - package com.aliasi.test.unit.matrix

com.aliasi.test.unit.sentences - package com.aliasi.test.unit.sentences

com.aliasi.test.unit.spell - package com.aliasi.test.unit.spell

com.aliasi.test.unit.stats - package com.aliasi.test.unit.stats

com.aliasi.test.unit.suffixarray - package com.aliasi.test.unit.suffixarray

com.aliasi.test.unit.symbol - package com.aliasi.test.unit.symbol

com.aliasi.test.unit.tag - package com.aliasi.test.unit.tag

com.aliasi.test.unit.tokenizer - package com.aliasi.test.unit.tokenizer

com.aliasi.test.unit.util - package com.aliasi.test.unit.util

com.aliasi.test.unit.xml - package com.aliasi.test.unit.xml

com.aliasi.tokenizer - package com.aliasi.tokenizer

Classes for tokenizing character sequences.

com.aliasi.util - package com.aliasi.util

Classes for general Java utilities.

com.aliasi.xml - package com.aliasi.xml

Classes for XML, including SAX filters and file visitors.

CommaSeparatedValues - Class in com.aliasi.util

A CommaSeparatedValues object represents a two-dimensional array of strings which may be read and written in comma-separated-value string representation.

CommaSeparatedValues(File, String) - Constructor for class com.aliasi.util.CommaSeparatedValues

Construct a comma-separated values array from the specified file using the specified character set.

CommaSeparatedValues(InputStream, String) - Constructor for class com.aliasi.util.CommaSeparatedValues

Construct a comma-separated values array from the specified input stream using the specified character set.

CommaSeparatedValues(Reader) - Constructor for class com.aliasi.util.CommaSeparatedValues

Construct a comma-separated values array from the specified reader.

CommaSeparatedValuesTest - Class in com.aliasi.test.unit.util

CommaSeparatedValuesTest() - Constructor for class com.aliasi.test.unit.util.CommaSeparatedValuesTest

comment(char[], int, int) - Method in class com.aliasi.xml.SAXWriter

Convenience method to write a slice of character data as a comment.

comment(String) - Method in class com.aliasi.xml.SAXWriter

Write the specified string as a comment.

CompactHashSet<E> - Class in com.aliasi.util

A CompactHashSet implements the set interface more tightly in memory and more efficiently than Java's HashSet.

CompactHashSet(int) - Constructor for class com.aliasi.util.CompactHashSet

Construct a compact hash set with the specified initial capacity.

CompactHashSet(E...) - Constructor for class com.aliasi.util.CompactHashSet

Construct a compact hash set containing the specified list of values.

CompactHashSetTest - Class in com.aliasi.test.unit.util

CompactHashSetTest() - Constructor for class com.aliasi.test.unit.util.CompactHashSetTest

COMPARATOR - Static variable in enum com.aliasi.io.LogLevel

Returns a comparator that compares levels by severity.

comparator() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the comparator for this sorted set.

comparator() - Static method in class com.aliasi.util.ScoredObject

Returns a comparator that sorts in ascending order of score.

comparator() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the comparator for this priority queue.

Compilable - Interface in com.aliasi.util

The Compilable interface specifies a general way in which an object may be compiled to an object output.

compile(Compilable) - Static method in class com.aliasi.util.AbstractExternalizable

Return the compiled form of the specified compilable.

CompiledNGramBoundaryLM - Class in com.aliasi.lm

A CompiledNGramBoundaryLM is constructed by reading the serialized form of an instance of NGramBoundaryLM.

CompiledNGramProcessLM - Class in com.aliasi.lm

A CompiledNGramProcessLM implements a conditional process language model.

CompiledNGramProcessLMTest - Class in com.aliasi.test.unit.lm

CompiledNGramProcessLMTest() - Constructor for class com.aliasi.test.unit.lm.CompiledNGramProcessLMTest

CompiledSpellChecker - Class in com.aliasi.spell

The CompiledSpellChecker class implements a first-best spell checker based on models of what users are likely to mean and what errors they are likely to make in expressing their meaning.

CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int, double, double, double) - Constructor for class com.aliasi.spell.CompiledSpellChecker

Construct a compiled spell checker based on the specified language model and similarity edit distance, set of valid output tokens, maximum n-best size per character, and the specified edit penalities for editing known tokens or the first or second characters of tokens.

CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker

Construct a compiled spell checker based on the specified language model and edit distance, tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.

CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker

Construct a compiled spell checker based on the specified language model and edit distance, a null tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.

CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>) - Constructor for class com.aliasi.spell.CompiledSpellChecker

Construct a compiled spell checker based on the specified language model and edit distance, with a null tokenizer factory, the specified set of valid output tokens, with default value for n-best size, known token edit cost and first and second character edit costs.

CompiledSpellCheckerTest - Class in com.aliasi.test.unit.spell

CompiledSpellCheckerTest() - Constructor for class com.aliasi.test.unit.spell.CompiledSpellCheckerTest

CompiledTokenizedLM - Class in com.aliasi.lm

A CompiledTokenizedLM implements a tokenized bounded sequence language model.

compileOrSerialize(Object, ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable

Compile the object to the output if it is compilable, else serialize it to the output if it is serializable but not compilable.

compileRead(LanguageModel.Dynamic) - Static method in class com.aliasi.test.unit.lm.UniformBoundaryLMTest

compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmHmmChunker

Compiles this model to the specified object output stream.

compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmRescoringChunker

Compiles this model to the specified object output stream.

compileTo(ObjectOutput) - Method in class com.aliasi.chunk.RegExChunker

Compiles this regular-expression chunker to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.chunk.TrainTokenShapeChunker

Compiles a chunker based on the training data received by this trainer to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.classify.DynamicLMClassifier

Writes a compiled version of this classifier to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.classify.KnnClassifier

Compiles this k-nearest-neighbor classifier to the specified object output stream.

compileTo(ObjectOutput) - Method in class com.aliasi.classify.LogisticRegressionClassifier

Compile this classifier to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Compile this trainer to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Compile this classifier to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.dict.AbstractDictionary

Compiles this dictionary to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.dict.DictionaryEntry

Compiles this dictionary entry to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.dict.MapDictionary

Serializes the object to the specified output.

compileTo(ObjectOutput) - Method in class com.aliasi.dict.TrieDictionary

Compile the entries in this dictionary to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.hmm.AbstractHmmEstimator

Compiles a copy of this estimated HMM to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.hmm.HmmCharLmEstimator

compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramBoundaryLM

Writes a compiled version of this boundary language model to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramProcessLM

Writes a compiled version of this process language model to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.lm.TokenizedLM

Writes a compiled version of this tokenized language model to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformBoundaryLM

Writes a compiled version of this model to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformProcessLM

Writes a compiled version of this model to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.spell.FixedWeightEditDistance

Writes a compiled version of this edit distance to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.spell.TrainSpellChecker

Writes a compiled spell checker to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.stats.BernoulliEstimator

Compiles this Bernoulli estimator to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.stats.LogisticRegression

Compiles this model to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.stats.MultivariateEstimator

Writes a constant version of this estimator to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonConstant

Compiles an instance of this constant Poisson distribution to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonEstimator

Writes a constant Poisson distribution with the same mean as the current value of this Poisson distribution's mean.

compileTo(ObjectOutput) - Method in class com.aliasi.symbol.SymbolTableCompiler

Compiles the symbol table to the specified object output.

compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer

Compiles this token categorizer to the specified object output.

compileTo(Compilable, File) - Static method in class com.aliasi.util.AbstractExternalizable

Compiles the specified compilable object to the specified file.

compileTo(ObjectOutput) - Method in interface com.aliasi.util.Compilable

Compile this object to the specified object output.

complete(String) - Method in class com.aliasi.spell.AutoCompleter

Returns a set of scored phrases sorted into decreasing order of score.

CompleteLinkClusterer<E> - Class in com.aliasi.cluster

A CompleteLinkClusterer implements complete link agglomerative clustering.

CompleteLinkClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer

Construct a complete link clusterer with the specified distance bound.

CompleteLinkClusterer(Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer

Construct a complete link clusterer with no distance bound.

CompleteLinkClustererTest - Class in com.aliasi.test.unit.cluster

CompleteLinkClustererTest() - Constructor for class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

concatenate(char[], char) - Static method in class com.aliasi.util.Arrays

Returns the array of characters consisting of the members of the first specified array followed by the specified character.

concatenate(String[], String[]) - Static method in class com.aliasi.util.Arrays

Returns a new array of strings containing the elements of the first array of strings specified followed by the elements of the second array of strings specified.

concatenate(Object[]) - Static method in class com.aliasi.util.Strings

Concatenate the elements of the specified array as strings, separating with the default separator Strings.DEFAULT_SEPARATOR_STRING.

concatenate(Object[], String) - Static method in class com.aliasi.util.Strings

Concatenate the elements of the specified array as strings, separating with the specified string spacer.

concatenate(Object[], int, String) - Static method in class com.aliasi.util.Strings

Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through the rest of the string, separating with the specified string spacer.

concatenate(Object[], int, int) - Static method in class com.aliasi.util.Strings

Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the default spacer Strings.DEFAULT_SEPARATOR_STRING.

concatenate(Object[], int, int, String) - Static method in class com.aliasi.util.Strings

Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the specified spacer.

ConditionalClassification - Class in com.aliasi.classify

A ConditionalClassification is a scored classification which estimates conditional probabilities of categories given an input.

ConditionalClassification(String[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification

Construct a conditional classification with the specified categories and conditional probabilities which sum to one within the default tolerance of 0.01.

ConditionalClassification(String[], double[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification

Construct a conditional classification with the specified categories, scores and conditional probabilities which sum to one within the default tolerance of 0.01.

ConditionalClassification(String[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification

Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.

ConditionalClassification(String[], double[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification

Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.

ConditionalClassificationTest - Class in com.aliasi.test.unit.classify

ConditionalClassificationTest() - Constructor for class com.aliasi.test.unit.classify.ConditionalClassificationTest

ConditionalClassifier<E> - Interface in com.aliasi.classify

The ConditionalClassifier interface specifies a single method for n-best classification with conditional category probabilities.

ConditionalClassifierEvaluator<E> - Class in com.aliasi.classify

A ConditionalClassifierEvaluator provides an evaluation harness for conditional probability-based n-best classifiers.

ConditionalClassifierEvaluator(ConditionalClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.ConditionalClassifierEvaluator

Construct a scored classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.

conditionalEntropy(int) - Method in class com.aliasi.classify.ConfusionMatrix

Returns the entropy of the distribution of categories in the response given that the reference category was as specified.

conditionalEntropy() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the conditional entropy of the response distribution against the reference distribution.

conditionalOneVersusAll(String) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator

Returns a scored precision-recall evaluation of the classifcation of the specified reference category versus all other categories using the conditional probability scores.

conditionalProbability(int) - Method in class com.aliasi.classify.ConditionalClassification

Returns the conditional probability estimate for the category at the specified rank.

conditionalProbability(String) - Method in class com.aliasi.classify.ConditionalClassification

Returns the conditional probability estimate for the specified category.

confidence(double) - Method in class com.aliasi.classify.ConfusionMatrix

Returns the normal approximation of half of the binomial confidence interval for this confusion matrix for the specified z-score.

confidence95() - Method in class com.aliasi.classify.ConfusionMatrix

Returns half the width of the 95% confidence interval for this confusion matrix.

confidence99() - Method in class com.aliasi.classify.ConfusionMatrix

Returns half the width of the 99% confidence interval for this confusion matrix.

ConfidenceChunker - Interface in com.aliasi.chunk

The ConfidenceChunker interface specifies a method for returning an iterator over chunks in order of confidence.

confidenceEvaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns the scored precision-recall evaluation derived from a confidence-based chunker.

confusionMatrix() - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the confusion matrix of first-best classification result statistics for this evaluator.

ConfusionMatrix - Class in com.aliasi.classify

An instance of ConfusionMatrix represents a quantitative comparison between two classifiers over a fixed set of categories on a number of test cases.

ConfusionMatrix(String[]) - Constructor for class com.aliasi.classify.ConfusionMatrix

Construct a confusion matrix with all zero values from the specified array of categories.

ConfusionMatrix(String[], int[][]) - Constructor for class com.aliasi.classify.ConfusionMatrix

Construct a confusion matrix with the specified set of categories and values.

confusionMatrix() - Method in class com.aliasi.spell.SpellEvaluator

Returns the confusion matrix for the current state of this evaluation.

ConfusionMatrixTest - Class in com.aliasi.test.unit.classify

ConfusionMatrixTest() - Constructor for class com.aliasi.test.unit.classify.ConfusionMatrixTest

consistentTokens(String[], String[], TokenizerFactory) - Static method in class com.aliasi.chunk.CharLmHmmChunker

constant(double) - Static method in class com.aliasi.stats.AnnealingSchedule

Return the annealing schedule for the specified constant learning rate.

ConstantTokenizer - Class in com.aliasi.test.unit.tokenizer

ConstantTokenizer(String[], String[]) - Constructor for class com.aliasi.test.unit.tokenizer.ConstantTokenizer

ConstantTokenizerFactory - Class in com.aliasi.test.unit.tokenizer

ConstantTokenizerFactory(String[], String[]) - Constructor for class com.aliasi.test.unit.tokenizer.ConstantTokenizerFactory

ConstantTokenizerTest - Class in com.aliasi.test.unit.tokenizer

ConstantTokenizerTest() - Constructor for class com.aliasi.test.unit.tokenizer.ConstantTokenizerTest

contains(E) - Method in class com.aliasi.cluster.Dendrogram

Returns true if this dendrogram contains the specified object as a leaf.

contains(Object) - Method in class com.aliasi.util.CompactHashSet

Returns true if this set contains the specified object.

containsChar(String, char) - Static method in class com.aliasi.util.Strings

Returns true if the specified string contains an instance of the specified character.

containsDigits(char[]) - Static method in class com.aliasi.util.Strings

Returns true if at least one of the characters in the specified array is a digit.

containsKey(Object) - Method in class com.aliasi.util.BinaryMap

Returns true if this mapping contains a mapping for the specified object.

containsLetter(char[]) - Static method in class com.aliasi.util.Strings

Returns true if at least one of the characters in the specified array is a letter.

containsValue(Object) - Method in class com.aliasi.util.BinaryMap

Returns true if this map contains a mapping from some key to the specified value.

CONTENT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the content attribute.

COORDS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the coords attribute.

copheneticCorrelation(Distance<? super E>) - Method in class com.aliasi.cluster.Dendrogram

Returns the Pearson correlation coefficient between the inter-object distances and the cophenetic distances defined by this dendrogram.

copy(TrieReader, TrieWriter) - Static method in class com.aliasi.lm.BitTrieWriter

Copies the content of the specified trie reader to the specified trie writer.

copy(char[]) - Static method in class com.aliasi.util.Arrays

Return a shallow copy of the specified array that contains the same elements as the specified array.

copy(Reader, Writer) - Static method in class com.aliasi.util.Streams

Copies the content of the reader into the writer.

copy(InputStream, OutputStream) - Static method in class com.aliasi.util.Streams

Copies the content of the input stream into the output stream.

copyFile(File, File) - Static method in class com.aliasi.util.Files

Copies the contents of one file into another.

Corpus<H extends Handler> - Class in com.aliasi.corpus

The Corpus abstract class provides a basis for passing training and testing data to data handlers.

Corpus() - Constructor for class com.aliasi.corpus.Corpus

Construct a corpus.

corpusLog2JointProbability() - Method in class com.aliasi.classify.JointClassifierEvaluator

Returns the joint log (base 2) probability of the entire evaluation corpus.

corpusLog2Probability() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns an estimate of the log (base 2) likelihood of the corpus given the point estimates of topic and document multinomials determined from this sample.

correctResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of cases where the response is correct.

correlation(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns (Pearson's) correlation coefficient between two specified arrays.

cosine(Vector) - Method in class com.aliasi.matrix.AbstractVector

Returns the cosine of this vector and the specified vector.

cosine(Vector) - Method in class com.aliasi.matrix.SparseFloatVector

cosine(Vector) - Method in interface com.aliasi.matrix.Vector

Returns the cosine product of this vector with the specified vector.

CosineDistance - Class in com.aliasi.matrix

The CosineDistance class implements proximity as vector cosine.

CosineDistance() - Constructor for class com.aliasi.matrix.CosineDistance

Construct a cosine proximity.

count(int, int) - Method in class com.aliasi.classify.ConfusionMatrix

Returns the value of the cell in the matrix for the specified reference and response category indices.

count() - Method in class com.aliasi.dict.DictionaryEntry

Returns the count for this dictionary entry.

count(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter

Returns the count for the specified character sequence.

count(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter

count(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter

Returns the count of the specified sequence of integers.

count(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

count(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the count in the training corpus for the specified sequence of characters.

count(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

countComparator() - Method in class com.aliasi.util.ObjectToCounterMap

Returns a CountComparator that compares objects based on their counts in this object to counter map.

Counter - Class in com.aliasi.util

A reassignable integer usable for counting.

Counter() - Constructor for class com.aliasi.util.Counter

Create a counter with initial count 0.

Counter(int) - Constructor for class com.aliasi.util.Counter

Create a counter with the specified count value.

CounterTest - Class in com.aliasi.test.unit.util

CounterTest() - Constructor for class com.aliasi.test.unit.util.CounterTest

cramersV() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the value of Cramér's V statistic for this matrix.

create(String[], double[]) - Static method in class com.aliasi.classify.JointClassification

Return a joint classification given the categories and log probabilities.

create(ScoredObject<String>[]) - Static method in class com.aliasi.classify.ScoredClassification

Deprecated.

Use ScoredClassification.create(List) instead.

create(List<ScoredObject<String>>) - Static method in class com.aliasi.classify.ScoredClassification

Factory method which returns a scored classification from the list of scored categories.

create(String, String) - Method in class com.aliasi.coref.AbstractMentionFactory

Return a mention based on the specified phrase and entity type.

create(String, String) - Method in interface com.aliasi.coref.MentionFactory

Return a mention based on the specified phrase and entity type.

create() - Method in interface com.aliasi.util.Factory

Return an instance created by this factory.

create() - Static method in class com.aliasi.util.SmallSet

Return an empty small set.

create(F) - Static method in class com.aliasi.util.SmallSet

Return a singleton empty set containing the specified member.

create(F, F) - Static method in class com.aliasi.util.SmallSet

Return a set containing the two specified members.

create(F[]) - Static method in class com.aliasi.util.SmallSet

Return a set consisting of members drawn from the specified array of members.

create(Set<? extends F>) - Static method in class com.aliasi.util.SmallSet

Return a small set containing the members specified in the set argument.

create(F, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet

Return a small set containing the member and set of members specified in the arguments.

create(Set<? extends F>, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet

Return a small set containing all of the members of both specified sets.

create() - Static method in class com.aliasi.util.Tuple

Returns a zero-length tuple.

create(E) - Static method in class com.aliasi.util.Tuple

Returns a tuple of length one containing the specified object.

create(E[]) - Static method in class com.aliasi.util.Tuple

Creates a tuple from the specified array of objects.

create(E, E) - Static method in class com.aliasi.util.Tuple

Returns a new tuple representing a pair of objects.

createAttributes(String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Create an attributes list with the specified attribute and value.

createAttributes(String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Create an attributes list with the specified pair of attributes.

createAttributes(String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Create an attributes list with the specified tripe of attributes and values.

createAttributes(String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Create an attributes list with the specified four attributes and values.

createAttributes(String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Create an attributes list with the specified five attributes and values.

createAttributes(String, String, String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Create an attributes list with the specified six attributes and values.

createChunk(int, int) - Static method in class com.aliasi.chunk.ChunkFactory

Return a chunk with the specified start and end positions, with default type and score.

createChunk(int, int, String) - Static method in class com.aliasi.chunk.ChunkFactory

Return a chunk with the specified start and end positions, specified type and default score.

createChunk(int, int, double) - Static method in class com.aliasi.chunk.ChunkFactory

Return a chunk with the specified start and end positions, specified score and default type.

createChunk(int, int, String, double) - Static method in class com.aliasi.chunk.ChunkFactory

Return a chunk with the specified start and end positions, type and score.

createLogProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification

Return a conditional classification given the categories and log probabilities.

createNGramBoundary(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier

Construct a dynamic classifier over the specified cateogries, using boundary character n-gram models of the specified order.

createNGramProcess(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier

Construct a dynamic classifier over the specified categories, using process character n-gram models of the specified order.

createProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification

Static factory method for conditional classifications based on the specified categories and linear probability ratios.

createTokenized(String[], TokenizerFactory, int) - Static method in class com.aliasi.classify.DynamicLMClassifier

Construct a dynamic language model classifier over the specified categories using token n-gram language models of the specified order and the specified tokenizer factory for tokenization.

crf() - Method in class com.aliasi.crf.ChainCrfChunker

Returns the underlying CRF for this chunker.

crossEntropy() - Method in class com.aliasi.classify.ConfusionMatrix

The cross-entropy of the response distribution against the reference distribution.

cumulativeProbability(long, long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the cumulative probability of all outcomes between the specified bounds, inclusive.

cumulativeProbability(long, long) - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the probability that an outcome will fall in the range between the specified lower and upper bounds inclusive.

cumulativeProbabilityGreater(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the cumulative probability of all outcomes greater than or equal to the specified lower bound.

cumulativeProbabilityGreater(long) - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the probability an outcome will be greater than or equal to the specified outcome.

cumulativeProbabilityLess(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the cumulative probability of all outcomes less than or equal to the specified upper bound.

cumulativeProbabilityLess(long) - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the probability an outcome will be less than or equal to the specified outcome.

currentAttributes() - Method in class com.aliasi.xml.ElementStackFilter

Returns the attributes as specified for the current containing element.

currentElement() - Method in class com.aliasi.xml.ElementStackFilter

Returns the qualified name of the current containing element's qualified name.

D

D - Variable in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

DATA - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the data attribute.

DATETIME - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the datetime attribute.

DD - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element dd.

dd() - Method in class com.aliasi.xml.XHtmlWriter

Start an dd element with no attributes.

dd(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an dd element with the specified attributes.

dd(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dd element with the specified attribute and value.

dd(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dd element with the specified attributes and values.

dd(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dd element with the specified attributes and values.

dd(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dd element with the specified attributes and values.

deAccentLatin1(char) - Static method in class com.aliasi.util.Strings

Returns the equivalent de-accented character for characters in the Latin-1 (ISO-8859-1) range (0000-00FF).

deAccentLatin1(CharSequence) - Static method in class com.aliasi.util.Strings

Returns the string constructed from the specified character sequence by deaccenting each of its characters.

debug(String) - Method in class com.aliasi.io.Reporter

Utility method for debug-level reports.

DECLARE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the declare attribute.

decrementSubstrings(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Decrements all of the substrings of the specified character slice by one.

decrementUnigram(char) - Method in class com.aliasi.lm.TrieCharSeqCounter

Decrements the unigram count for the specified character.

decrementUnigram(char, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Decrements the unigram count by the specified amount for the specified character.

DEFAULT_ACCEPT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier

The default value of the category for accepting input, "true".

DEFAULT_CHUNK_SCORE - Static variable in class com.aliasi.chunk.ChunkFactory

The default chunk score, Double.NEGATIVE_INFINITY.

DEFAULT_CHUNK_TYPE - Static variable in class com.aliasi.chunk.ChunkFactory

The default chunk type, "CHUNK".

DEFAULT_DOCUMENT_BOUNDARY_TOKEN - Static variable in class com.aliasi.suffixarray.TokenSuffixArray

The default boundary token for documents.

DEFAULT_REJECT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier

The default value of the category for rejecting input, "false".

DEFAULT_SEPARATOR_CHAR - Static variable in class com.aliasi.util.Strings

The default separator character, a single space.

DEFAULT_SEPARATOR_STRING - Static variable in class com.aliasi.util.Strings

The default separator string.

DEFAULT_TEST_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus

The name of the default testing directory, "test".

DEFAULT_TRAIN_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus

The name of the default training directory, "train".

DEFER - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the defer attribute.

DEL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element del.

del() - Method in class com.aliasi.xml.XHtmlWriter

Start an del element with no attributes.

del(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an del element with the specified attributes.

del(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an del element with the specified attribute and value.

del(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an del element with the specified attributes and values.

del(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an del element with the specified attributes and values.

del(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an del element with the specified attributes and values.

DelegateHandler - Class in com.aliasi.xml

A DelegateHandler may be used with a delegating handler to more efficiently implement nested embeddings.

DelegateHandler(DelegatingHandler) - Constructor for class com.aliasi.xml.DelegateHandler

Construct a delegate handler that coordinates recursive delegation with the specified delegating handler.

DelegatingHandler - Class in com.aliasi.xml

A DelegatingHandler is a SAX filter that routes events to embedded handlers based on their element embedding.

DelegatingHandler(int) - Constructor for class com.aliasi.xml.DelegatingHandler

Construct a delegating handler with up to the specified maximum delegation depth.

DelegatingHandler() - Constructor for class com.aliasi.xml.DelegatingHandler

Construct a delegating handler with delegation depth 512.

DelegatingHandlerTest - Class in com.aliasi.test.unit.xml

DelegatingHandlerTest() - Constructor for class com.aliasi.test.unit.xml.DelegatingHandlerTest

deleteCost(String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch

Returns the cost to delete the specified token.

deleteWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance

Returns the constant weight of deleting the specified character.

deleteWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weight of deleting the specified character.

Dendrogram<E> - Class in com.aliasi.cluster

A Dendrogram represents the result of a weighted hierarchical clustering of a set of objects.

dendrogram1() - Method in class com.aliasi.cluster.LinkDendrogram

Returns the first dendrogram in the linked dendrogram.

dendrogram2() - Method in class com.aliasi.cluster.LinkDendrogram

Returns the second dendrogram in the linked dendrogram.

DendrogramTest - Class in com.aliasi.test.unit.cluster

DendrogramTest() - Constructor for class com.aliasi.test.unit.cluster.DendrogramTest

DenseMatrix - Class in com.aliasi.matrix

A DenseMatrix is a matrix implementation suitable for matrices with primarily non-zero values.

DenseMatrix(int, int) - Constructor for class com.aliasi.matrix.DenseMatrix

Construct a dense matrix with the specified positive number of rows and columns.

DenseMatrix(double[][]) - Constructor for class com.aliasi.matrix.DenseMatrix

Construct a dense matrix with the specified values.

DenseMatrixTest - Class in com.aliasi.test.unit.matrix

DenseMatrixTest() - Constructor for class com.aliasi.test.unit.matrix.DenseMatrixTest

DenseVector - Class in com.aliasi.matrix

A DenseVector is a vector implementation suitable for vectors with primarily non-zero values.

DenseVector(int) - Constructor for class com.aliasi.matrix.DenseVector

Construct a dense vector with the specified number of dimensions.

DenseVector(double[]) - Constructor for class com.aliasi.matrix.DenseVector

Construct a dense vector with the specified values.

DenseVector(DenseVector) - Constructor for class com.aliasi.matrix.DenseVector

Constructs a deep copy of the specified vector.

DenseVector(Vector) - Constructor for class com.aliasi.matrix.DenseVector

Cosntruct a deep copy of the specified vector as a dense vector.

DenseVectorTest - Class in com.aliasi.test.unit.matrix

DenseVectorTest() - Constructor for class com.aliasi.test.unit.matrix.DenseVectorTest

dereference() - Method in class com.aliasi.cluster.Dendrogram

Returns the top-level cluster of which this dendrogram is a member.

DFN - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element dfn.

dfn() - Method in class com.aliasi.xml.XHtmlWriter

Start an dfn element with no attributes.

dfn(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an dfn element with the specified attributes.

dfn(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dfn element with the specified attribute and value.

dfn(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dfn element with the specified attributes and values.

dfn(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dfn element with the specified attributes and values.

dfn(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dfn element with the specified attributes and values.

dictionary() - Method in class com.aliasi.dict.ApproxDictionaryChunker

Returns the trie dictionary underlying this chunker.

Dictionary<C> - Interface in com.aliasi.dict

The Dictionary interface represents a dictionary as a set of entries.

DictionaryEntry<C> - Class in com.aliasi.dict

A DictionaryEntry provides a phrase as a string, an object-based category for the phrase, and a double-valued score.

DictionaryEntry(String, C, int, double) - Constructor for class com.aliasi.dict.DictionaryEntry

Construct a dictionary entry with the specified phrase, category, count and score.

DictionaryEntry(String, C, double) - Constructor for class com.aliasi.dict.DictionaryEntry

Construct a dictionary entry with the specified phrase, category and score, with a count of zero.

DictionaryEntry(String, C, int) - Constructor for class com.aliasi.dict.DictionaryEntry

Construct a dictionary entry with the specified phrase, category and count, with the score set to the count value.

DictionaryEntry(String, C) - Constructor for class com.aliasi.dict.DictionaryEntry

Construct a dictionary entry with the specified phrase and category, with count and score set to 1.

DictionaryEntryTest - Class in com.aliasi.test.unit.dict

DictionaryEntryTest() - Constructor for class com.aliasi.test.unit.dict.DictionaryEntryTest

didYouMean(String) - Method in class com.aliasi.spell.CompiledSpellChecker

Returns a first-best hypothesis of the intended message given a received message.

didYouMean(String) - Method in interface com.aliasi.spell.SpellChecker

Returns a first-best hypothesis of the intended message given the received message.

didYouMeanNBest(String) - Method in class com.aliasi.spell.CompiledSpellChecker

Returns an iterator over the n-best spelling corrections for the specified input string.

digamma(double) - Static method in class com.aliasi.util.Math

Returns the value of the digamma function for the specified value.

DIGIT_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer

The digit category.

DIR - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element dir.

dir() - Method in class com.aliasi.xml.XHtmlWriter

Start an dir element with no attributes.

dir(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an dir element with the specified attributes.

dir(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dir element with the specified attribute and value.

dir(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dir element with the specified attributes and values.

dir(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dir element with the specified attributes and values.

dir(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dir element with the specified attributes and values.

DIR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the dir attribute.

dirichletLog2Prob(double, double[]) - Static method in class com.aliasi.stats.Statistics

Returns the log (base 2) of the probability of the specified discrete distribution given the specified uniform Dirichlet with concentration parameters equal to the specified value.

dirichletLog2Prob(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns the log (base 2) of the probability of the specified discrete distribution given the specified Dirichlet distribution concentration parameters.

DISABLED - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the disabled attribute.

DiscreteChooser - Class in com.aliasi.dca

The DiscreteChooser class implements multinomial conditional logit discrete choice analysis with variables varying over alternatives.

DiscreteChooser(Vector) - Constructor for class com.aliasi.dca.DiscreteChooser

Construct a discrete chooser with the specified coefficient vector.

DiscreteChooserTest - Class in com.aliasi.test.unit.dca

DiscreteChooserTest() - Constructor for class com.aliasi.test.unit.dca.DiscreteChooserTest

DiscreteDistribution - Interface in com.aliasi.stats

A DiscreteDistribution provides a probability distribution over long integer outcomes.

DiscreteObjectChooser<E> - Class in com.aliasi.dca

A DiscreteObjectChooser provides an implementation of discrete choice analysis (DCA) over arbitrary objects using a feature extractor.

DiscreteObjectChooser(FeatureExtractor<E>, SymbolTable, DiscreteChooser) - Constructor for class com.aliasi.dca.DiscreteObjectChooser

Construct a discrete chooser based on the specified feature extractor, feature symbol table, and base chooser.

DiscreteObjectChooserTest - Class in com.aliasi.test.unit.dca

DiscreteObjectChooserTest() - Constructor for class com.aliasi.test.unit.dca.DiscreteObjectChooserTest

DiskCorpus<H extends Handler> - Class in com.aliasi.corpus

A DiskCorpus reads data from a specified training and test directory using a specified parser.

DiskCorpus(Parser<H>, File) - Constructor for class com.aliasi.corpus.DiskCorpus

Construct a corpus from the specified parser and data directory.

DiskCorpus(Parser<H>, File, File) - Constructor for class com.aliasi.corpus.DiskCorpus

Construct a corpus from the specified parser and training and test directories.

distance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer

Returns the distance function for this hierarchical clusterer.

DISTANCE - Static variable in class com.aliasi.matrix.CosineDistance

A constant for the cosine distance.

distance(Vector, Vector) - Method in class com.aliasi.matrix.CosineDistance

Returns one minus the proximity of the vectors.

DISTANCE - Static variable in class com.aliasi.matrix.EuclideanDistance

The Euclidean distance.

distance(Vector, Vector) - Method in class com.aliasi.matrix.EuclideanDistance

Returns the Euclidean distance between the specified pair of vectors.

distance(Vector, Vector) - Method in class com.aliasi.matrix.MinkowskiDistance

Returns the Minkowski distance between the specified pair of vectors.

DISTANCE - Static variable in class com.aliasi.matrix.TaxicabDistance

The taxicab distance.

distance(Vector, Vector) - Method in class com.aliasi.matrix.TaxicabDistance

Returns the taxicab distance between the specified pair of vectors.

distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.EditDistance

Returns the edit distance between the specified character sequences.

distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaccardDistance

Returns the Jaccard distance between the specified character sequence.

distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaroWinklerDistance

Returns the Jaro-Winkler distance between the specified character sequences.

distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.TfIdfDistance

Return the TF/IDF distance between the specified character sequences.

distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weighted edit distance between the specified character sequences.

Distance<E> - Interface in com.aliasi.util

The Distance interface provides a general method for defining distances between two objects.

distance(E, E) - Method in interface com.aliasi.util.Distance

Returns the distance between the specified pair of objects.

distanceThreshold() - Method in class com.aliasi.dict.ApproxDictionaryChunker

Returns the maximum edit distance a string can be from a dictionary entry in order to be returned by this chunker.

DIV - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element div.

div() - Method in class com.aliasi.xml.XHtmlWriter

Start an div element with no attributes.

div(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an div element with the specified attributes.

div(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an div element with the specified attribute and value.

div(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an div element with the specified attributes and values.

div(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an div element with the specified attributes and values.

div(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an div element with the specified attributes and values.

DL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element dl.

dl() - Method in class com.aliasi.xml.XHtmlWriter

Start an dl element with no attributes.

dl(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an dl element with the specified attributes.

dl(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dl element with the specified attribute and value.

dl(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dl element with the specified attributes and values.

dl(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dl element with the specified attributes and values.

dl(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dl element with the specified attributes and values.

docEndToken(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Returns the index of the next token past the last token of the specified document.

docFrequency(String) - Method in class com.aliasi.spell.TfIdfDistance

Returns the number of training documents that contained the specified term.

docStartToken(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Returns the starting token position in the underlying token suffix array of the document with the specified identifier in the overall set of documents.

documentBoundaryToken() - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns the token used to separate documents in this suffix array.

documentLength(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the length of the specified document in tokens.

documentNames() - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Returns an unmodifiable view of the set of document names in the collection.

documentText(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Return the text of the document with the specified name.

DocumentTokenSuffixArray - Class in com.aliasi.suffixarray

A DocumentTokenSuffixArray implements a suffix array over a collection of named documents.

DocumentTokenSuffixArray(Map<String, String>, TokenizerFactory, int, String) - Constructor for class com.aliasi.suffixarray.DocumentTokenSuffixArray

Construct a suffix array from the specified identified document collection using the specified tokenizer factory, limiting comparisons to the specified maximum suffix length and separating documents with the specified boundary token.

DocumentTokenSuffixArrayTest - Class in com.aliasi.test.unit.suffixarray

DocumentTokenSuffixArrayTest() - Constructor for class com.aliasi.test.unit.suffixarray.DocumentTokenSuffixArrayTest

documentTopicCount(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of times the specified topic was assigned to the specified document in this sample.

documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation

Returns the concentration value of the uniform Dirichlet prior over topic distributions for documents.

documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the uniform Dirichlet concentration hyperparameter α for document distributions over topics from which this sample was produced.

documentTopicProb(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the estimate of the probability of the topic being assigned to a word in the specified document given the topic * assignments in this sample.

doNotEditTokens() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns an unmodifiable view of the set of tokens that will never be edited in this compiled spell checker.

dotProduct(Vector) - Method in class com.aliasi.matrix.AbstractVector

Returns the dot product (inner product) of this vector with the specified vector.

dotProduct(Vector) - Method in class com.aliasi.matrix.DenseVector

dotProduct(Vector) - Method in class com.aliasi.matrix.SparseFloatVector

dotProduct(Vector) - Method in interface com.aliasi.matrix.Vector

Returns the dot product of this vector with the specified vector.

DotProductKernel - Class in com.aliasi.matrix

The DotProductKernel is the trivial kernel function computed by taking the dot product of the input vectors.

DotProductKernel() - Constructor for class com.aliasi.matrix.DotProductKernel

Construct a dot-product kernel.

DotProductKernelTest - Class in com.aliasi.test.unit.matrix

DotProductKernelTest() - Constructor for class com.aliasi.test.unit.matrix.DotProductKernelTest

doubleValue() - Method in class com.aliasi.util.Counter

Returns the value of this counter as a double.

DT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element dt.

dt() - Method in class com.aliasi.xml.XHtmlWriter

Start an dt element with no attributes.

dt(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an dt element with the specified attributes.

dt(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dt element with the specified attribute and value.

dt(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dt element with the specified attributes and values.

dt(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dt element with the specified attributes and values.

dt(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an dt element with the specified attributes and values.

DynamicLMClassifier<L extends LanguageModel.Dynamic> - Class in com.aliasi.classify

A DynamicLMClassifier is a language model classifier that accepts training events of categorized character sequences.

DynamicLMClassifier(String[], L[]) - Constructor for class com.aliasi.classify.DynamicLMClassifier

Construct a dynamic language model classifier over the specified categories with specified language models per category and an overall category estimator.

DynamicLMClassifierTest - Class in com.aliasi.test.unit.classify

DynamicLMClassifierTest() - Constructor for class com.aliasi.test.unit.classify.DynamicLMClassifierTest

E

edgeFeatures(int, int) - Method in class com.aliasi.crf.ChainCrfFeatures

Return the edge features for the specified input position and index of the previous tag.

editDistance() - Method in class com.aliasi.dict.ApproxDictionaryChunker

Returns the weighted edit distance for matching with this chunker.

editDistance() - Method in class com.aliasi.spell.AutoCompleter

Returns the weighted edit distance for this auto-completer.

editDistance() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the weighted edit distance for this compiled spell checker.

EditDistance - Class in com.aliasi.spell

The EditDistance class implements the standard notion of edit distance, with or without transposition.

EditDistance(boolean) - Constructor for class com.aliasi.spell.EditDistance

Construct an edit distance with or without transposition based on the specified flag.

editDistance(CharSequence, CharSequence, boolean) - Static method in class com.aliasi.spell.EditDistance

Returns the edit distance between the character sequences with or without transpositions as specified.

editDistance() - Method in class com.aliasi.spell.TrainSpellChecker

Returns the weighted edit distance (channel model) underlying this spell checker trainer.

EditDistanceTest - Class in com.aliasi.test.unit.spell

EditDistanceTest() - Constructor for class com.aliasi.test.unit.spell.EditDistanceTest

elapsedTimeMillis() - Method in class com.aliasi.util.AbstractCommand

Return the elapsed time since the construction of this command in milliseconds.

elasticNet(double, double, boolean) - Static method in class com.aliasi.stats.RegressionPrior

Returns the elastic net prior with the specified weight on the Laplace prior, the specified scale parameter for the elastic net and a noninformative prior on the intercept (dimension 0) if the specified flag is set.

element() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the highest scoring object in this priority queue, throwing an exception if the queue is empty.

element() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the largest element in this queue according to the comparator, throwing an exception if the queue is empty.

ElementStackFilter - Class in com.aliasi.xml

Provides a SAX filter that maintains a stack of elements visited.

ElementStackFilter(DefaultHandler) - Constructor for class com.aliasi.xml.ElementStackFilter

Construct an element stack filter that delegates events to the specified handler.

ElementStackFilter() - Constructor for class com.aliasi.xml.ElementStackFilter

Construct an element stack filter without a specified handler to which to delegate events.

ElementStackFilterTest - Class in com.aliasi.test.unit.xml

ElementStackFilterTest() - Constructor for class com.aliasi.test.unit.xml.ElementStackFilterTest

elevenPtInterpPrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the interpolated precision at eleven recall points evenly spaced between 0 and 1.

elevenPtInterpPrecTest() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

EM - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element em.

em() - Method in class com.aliasi.xml.XHtmlWriter

Start an em element with no attributes.

em(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an em element with the specified attributes.

em(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an em element with the specified attribute and value.

em(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an em element with the specified attributes and values.

em(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an em element with the specified attributes and values.

em(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an em element with the specified attributes and values.

emissionCache() - Method in class com.aliasi.hmm.HmmDecoder

Returns the mapping used to cache emission probabilities, or null if not caching.

emissionLm(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

Returns the language model used for emission probabilities for the specified state.

emissionLog2Cache() - Method in class com.aliasi.hmm.HmmDecoder

Returns the mapping used to cache log (base 2) emission probabilities, or null if not caching.

emIterator(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ObjectHandler<Classified<CharSequence>>>, Corpus<ObjectHandler<CharSequence>>, double) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier

Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories.

emitLog2Prob(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm

Return the log (base 2) of the emission estimate.

emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) of the emission estimate.

emitLog2Prob(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Return the log (base 2) of the emission estimate.

emitLog2Prob(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) of the emission estimate.

emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator

emitProb(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm

Returns an estimate the emission of the specified string by the state with the specified label.

emitProb(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm

Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.

emitProb(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.

emitProb(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns an estimate the emission of the specified string by the state with the specified label.

emitProb(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator

Returns the estimate of the probability of the specified string being emitted from the specified state.

empty() - Static method in class com.aliasi.util.Iterators

Returns an iterator that has no elements.

EMPTY_ATTS - Static variable in class com.aliasi.xml.SimpleElementHandler

An implementation of Attributes with no attributes.

EMPTY_ATTS_STRING - Static variable in class com.aliasi.test.unit.xml.MockDefaultHandler

EMPTY_CHAR_ARRAY - Static variable in class com.aliasi.util.Strings

The zero-length character array.

EMPTY_INT_ARRAY - Static variable in class com.aliasi.util.Arrays

A length 0 array of integers.

EMPTY_STRING - Static variable in class com.aliasi.util.Strings

The empty string.

EMPTY_STRING_2D_ARRAY - Static variable in class com.aliasi.util.Strings

The zero-length two-dimensional array of strings.

EMPTY_STRING_ARRAY - Static variable in class com.aliasi.util.Strings

The zero-length string array.

emTrain(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ObjectHandler<Classified<CharSequence>>>, Corpus<ObjectHandler<CharSequence>>, double, int, double, Reporter) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier

Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories, maximum number of epochs, minimum improvement per epoch, and reporter to which progress reports are sent.

ENCTYPE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the enctype attribute.

end() - Method in interface com.aliasi.chunk.Chunk

Returns the index of one past the last character in this chunk.

endBoundaryEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation

Returns a precision/recall evaluation based on the end boundaries in the reference and response cases.

endDocument() - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

endDocument() - Method in class com.aliasi.xml.GroupCharactersFilter

End the document, delegating the call to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) on any accumulated characters.

endDocument() - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

endDocument() - Method in class com.aliasi.xml.SAXWriter

Flushes the underlying character writers output to the output stream, trapping all exceptions.

endElement(String, String, String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

endElement(String, String, String) - Method in class com.aliasi.xml.DelegatingHandler

Call is delegated to the delegate and may trigger a finish delegate callback.

endElement(String, String, String) - Method in class com.aliasi.xml.ElementStackFilter

End the specified element, popping its qualified name and attributes off the stack, and delegating the SAX event to the contained handler.

endElement(String, String, String) - Method in class com.aliasi.xml.GroupCharactersFilter

Ends the specified element, delegating the SAX event to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) to handle any accumulated characters.

endElement(String, String, String) - Method in class com.aliasi.xml.RemoveElementsFilter

Removes specified elements, passing others to the contained handler.

endElement(String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

endElement(String, String, String) - Method in class com.aliasi.xml.SAXWriter

Prints the end element, using the qualified name.

endLog2Prob(String) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) of the end probability for the specified state.

endLog2Prob(int) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) of the end probability for the state with the specified identifier.

endLog2Prob(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) of the end probability for the state with the specified identifier.

endLog2Prob(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) of the end probability for the specified state.

endOfStream() - Method in class com.aliasi.io.BitInput

Returns true if all of the available bits have been read or if this stream has been closed.

endPrefixMapping(String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

endPrefixMapping(String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

endPrefixMapping(String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

endProb(String) - Method in class com.aliasi.hmm.AbstractHmm

Returns the end probability for the specified state.

endProb(int) - Method in class com.aliasi.hmm.AbstractHmm

Returns the end probability for the state with the specified identifier.

endProb(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the end probability for the state with the specified identifier.

endProb(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the end probability for the specified state.

endProb(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

endSimpleElement(String) - Method in class com.aliasi.xml.SimpleElementHandler

End an element with a null namespace, using the local name for both local and qualified names.

endSimpleElement(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler

End an element for the specified handler with a null namespace, using the local name for both local and qualified names.

enforceConsistency() - Method in class com.aliasi.chunk.BioTagChunkCodec

Returns true if this codec enforces consistency of the chunkings relative to the tokenizer factory.

EnglishMentionFactory - Class in com.aliasi.coref

A mention factory for English phrases.

EnglishMentionFactory() - Constructor for class com.aliasi.coref.EnglishMentionFactory

Constructs a new English mention factory.

EnglishMentionFactoryTest - Class in com.aliasi.test.unit.coref

EnglishMentionFactoryTest() - Constructor for class com.aliasi.test.unit.coref.EnglishMentionFactoryTest

EnglishStopTokenizerFactory - Class in com.aliasi.tokenizer

An EnglishStopTokenizerFactory applies an English stop list to a contained base tokenizer factory.

EnglishStopTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.EnglishStopTokenizerFactory

Construct an English stop tokenizer factory with the specified base factory.

EnglishStopTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

EnglishStopTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.EnglishStopTokenizerFactoryTest

entityToCharacter(String) - Static method in class com.aliasi.util.Sgml

Returns the character represented by the specified SGML entity, or null if the entity is undefined.

entityType() - Method in class com.aliasi.coref.AbstractMentionChain

Returns the entity type associated with this mention chain.

entityType() - Method in class com.aliasi.coref.CachedMention

Returns the type of entity recognized for this mention.

entityType() - Method in interface com.aliasi.coref.Mention

Returns the type of entity recognized for this mention.

entityType() - Method in interface com.aliasi.coref.MentionChain

Returns the entity type associated with this mention chain.

EntityTypeMatch - Class in com.aliasi.coref.matchers

Implements a matching function that returns the score specified in the constructor if the mention has the specified entity type.

EntityTypeMatch(int, String) - Constructor for class com.aliasi.coref.matchers.EntityTypeMatch

Construct an instance of an entity type matcher that returns the specified score for a match against a mention of the specified type.

EntityTypeMatchTest - Class in com.aliasi.test.unit.coref.matchers

EntityTypeMatchTest() - Constructor for class com.aliasi.test.unit.coref.matchers.EntityTypeMatchTest

entropy() - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the entropy of this distribution in bits (log 2).

entropy() - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the entropy of this distribution.

entryList() - Method in class com.aliasi.dict.AbstractDictionary

Returns all of the dictionary entries for this dictionary.

entryList() - Method in interface com.aliasi.dict.Dictionary

Returns all of the dictionary entries for this dictionary.

entrySet() - Method in class com.aliasi.util.BinaryMap

Return a set view of the mappings in this map.

entrySet() - Method in class com.aliasi.util.FastCache

Returns a snapshot of the entries in this map.

entrySet() - Method in class com.aliasi.util.HardFastCache

Returns a snapshot of the entries in this map.

epoch() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the epoch in which this sample was generated.

equal(Chunking, Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl

Returns true if the specified chunkings are equal.

equalCharSequence(CharSequence, CharSequence) - Static method in class com.aliasi.util.Strings

Return true if the two character sequences have the same length and the same characters.

equals(Object) - Method in interface com.aliasi.chunk.Chunk

Returns true if the specified object is a chunk that is equal to this chunk.

equals(Object) - Method in class com.aliasi.chunk.ChunkAndCharSeq

Returns true if the specified object is a chunk and character sequence structurally equivalent to this one.

equals(Object) - Method in interface com.aliasi.chunk.Chunking

Returns true if the specified object is a chunking equal to this one.

equals(Object) - Method in class com.aliasi.chunk.ChunkingImpl

equals(Object) - Method in class com.aliasi.coref.AbstractMentionChain

Returns true if the specified object is a mention chain that is equal to this mention chain.

equals(MentionChain) - Method in class com.aliasi.coref.AbstractMentionChain

Returns true if the specified mention chain is equal to this mention chain.

equals(Object) - Method in class com.aliasi.dict.DictionaryEntry

Returns true if the specified object is a dictionary object equal to this one.

equals(Object) - Method in class com.aliasi.matrix.AbstractMatrix

Return true if the specified object is a matrix of the same dimensionality with the same values.

equals(Object) - Method in class com.aliasi.matrix.AbstractVector

Returns true if the specified object is a vector with the same dimensionality and values as this vector.

equals(Object) - Method in interface com.aliasi.matrix.Matrix

Returns true if the specified object is a matrix with the same number of rows and columns and the same value in every cell as this matrix.

equals(Object) - Method in class com.aliasi.matrix.SparseFloatVector

Returns true if the specified object is a vector with the same dimensionality and values as this vector.

equals(Object) - Method in interface com.aliasi.matrix.Vector

Returns true if the specified object is a vector that has the same dimensionality and values as this vector.

equals(Object) - Method in class com.aliasi.tag.StringTagging

Returns true if the specified object is a string tagging that's structurally identical to this tagging.

equals(Object) - Method in class com.aliasi.tokenizer.Tokenization

Returns true if the specified object is a tokenization that is equal to this one.

equals(Object[], Object[]) - Static method in class com.aliasi.util.Arrays

Return true if the specified arrays are the same length and contain the same elements.

equals(Object) - Method in class com.aliasi.util.Pair

Returns true if the specified object is a pair that has objects equal to this pair's.

equals(Object) - Method in class com.aliasi.util.ScoredObject

Returns true if the specified object is a scored object with an object equal to this object's and equal scores.

equivalenceEvaluation() - Method in class com.aliasi.cluster.ClusterScore

Returns the precision-recall evaluation corresponding to equalities in the reference and response clusterings.

error(String) - Method in class com.aliasi.io.Reporter

Utility method for error-level reports.

error(SAXParseException) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

error(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

error(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

estimate(Corpus<ObjectHandler<Tagging<F>>>, ChainCrfFeatureExtractor<F>, boolean, int, boolean, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrf

Return the CRF estimated using stochastic gradient descent with the specified prior from the specified corpus of taggings of type F pruned to the specified minimum feature count, using the specified feature extractor, automatically adding an intercept feature if the flag is true, allow unseen tag transitions as specified, using the specified training parameters for annealing, measuring convergence, and reporting the incremental results to the specified reporter.

estimate(Corpus<ObjectHandler<Chunking>>, TagChunkCodec, TokenizerFactory, ChainCrfFeatureExtractor<String>, boolean, int, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrfChunker

Return the chain CRF-based chunker estimated from the specified corpus, which is converted to a tagging corpus using the specified coder/decoder and tokenizer factory, then passed to the chain CRF estimate method along with the rest of the arguments.

estimate(Vector[][], int[], RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.dca.DiscreteChooser

Returns a discrete choice model estimated from the specified training data, prior, and learning parameters.

estimate(FeatureExtractor<F>, List<List<F>>, int[], int, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.dca.DiscreteObjectChooser

Because intercepts are ignored, they are not added to feature maps and should not be treated as noninformative in the prior.

estimate(Vector[], int[], RegressionPrior, AnnealingSchedule, Reporter, double, int, int) - Static method in class com.aliasi.stats.LogisticRegression

Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.

estimate(Vector[], int[], RegressionPrior, int, LogisticRegression, AnnealingSchedule, double, int, int, int, ObjectHandler<LogisticRegression>, Reporter) - Static method in class com.aliasi.stats.LogisticRegression

Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.

estimator(int) - Method in class com.aliasi.stats.PotentialScaleReduction

Returns the estimator for the specified chain.

EuclideanDistance - Class in com.aliasi.matrix

The EuclideanDistance class implements standard Euclidean distance between vectors.

EuclideanDistance() - Constructor for class com.aliasi.matrix.EuclideanDistance

Construct a new Euclidean distance.

EuclideanDistanceTest - Class in com.aliasi.test.unit.matrix

EuclideanDistanceTest() - Constructor for class com.aliasi.test.unit.matrix.EuclideanDistanceTest

evaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator

Return the first-best chunking evaluation.

evaluation() - Method in class com.aliasi.sentences.SentenceEvaluator

Return the evaluation for this evaluator.

ExactDictionaryChunker - Class in com.aliasi.dict

An exact dictionary chunker extracts chunks based on exact matches of tokenized dictionary entries.

ExactDictionaryChunker(Dictionary<String>, TokenizerFactory) - Constructor for class com.aliasi.dict.ExactDictionaryChunker

Construct an exact dictionary chunker from the specified dictionary and tokenizer factory which is case sensitive and returns all matches.

ExactDictionaryChunker(Dictionary<String>, TokenizerFactory, boolean, boolean) - Constructor for class com.aliasi.dict.ExactDictionaryChunker

Construct an exact dictionary chunker from the specified dictionary and tokenizer factory, returning all matches or not as specified.

ExactDictionaryChunkerTest - Class in com.aliasi.test.unit.dict

ExactDictionaryChunkerTest() - Constructor for class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

ExactPhraseMatch - Class in com.aliasi.coref.matchers

Implements a matching function that returns the score specified in the constructor if there is a match between the normal phrases of the mention and one of the mentions in the mention chain.

ExactPhraseMatch(int) - Constructor for class com.aliasi.coref.matchers.ExactPhraseMatch

Construct an instance of an exact phrase matcher that returns the specified score if there is a match.

ExactPhraseMatchTest - Class in com.aliasi.test.unit.coref.matchers

ExactPhraseMatchTest() - Constructor for class com.aliasi.test.unit.coref.matchers.ExactPhraseMatchTest

Exceptions - Class in com.aliasi.util

Static utility methods for handling exceptions.

exponential(double, double) - Static method in class com.aliasi.stats.AnnealingSchedule

Return the exponential annealing schedule with the specified initial learning rate and exponent.

extension(File) - Static method in class com.aliasi.util.Files

Returns the suffix of the file's name, defined as the part of the name after the final period, or null if there is no period in the name.

extensionCount(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter

Returns the sum of the counts of all character sequences one character longer than the specified character slice.

extensionCount(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter

extensionCount(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter

Returns the sum of the count of all sequences that extend the specified sequence by one integer.

extensionCount(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

extensionCount(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the sum of the counts of all character sequences one character longer than the specified character sequence.

extensionCount(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

extract(List<E>, List<String>) - Method in interface com.aliasi.crf.ChainCrfFeatureExtractor

Return the chain CRF features for the specified list of input tokens and specified list of possible tags.

F

Factory<E> - Interface in com.aliasi.util

A Factory provides a generic interface for object creation of a specified type.

FAILURE_LABEL - Static variable in class com.aliasi.stats.BernoulliDistribution

The label for dimension zero: "failure".

falseNegative() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of false negative cases.

falseNegativeEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation

Return the set of chunks and character sequences whose end boundaries are in reference but not the response chunking.

falseNegatives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the list of false negative cases along with their classifications for items of the specified category.

falseNegatives() - Method in class com.aliasi.cluster.ClusterScore

Returns the set of false negative relations for this scoring.

falseNegativeSet() - Method in class com.aliasi.chunk.ChunkingEvaluation

Returns the set of false negatives.

falsePositive() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of false positive cases.

falsePositiveEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation

Return the set of chunks and character sequences whose end boundaries are in response but not the reference chunking.

falsePositives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the list of false positive cases along with their classifications for items of the specified category.

falsePositives() - Method in class com.aliasi.cluster.ClusterScore

Returns the set of false positive relations for this scoring.

falsePositiveSet() - Method in class com.aliasi.chunk.ChunkingEvaluation

Returns the set of false positives.

FastCache<K,V> - Class in com.aliasi.util

A FastCache is a map implemented with soft references, optimistic copy-on-write updates, and approximate count-based pruning.

FastCache(int) - Constructor for class com.aliasi.util.FastCache

Constrcut a fast cache of the specified size and default load factor.

FastCache(int, double) - Constructor for class com.aliasi.util.FastCache

Construct a fast cache of the specified size (measured in number of hash buckets) and load factor.

FastCacheTest - Class in com.aliasi.test.unit.util

FastCacheTest() - Constructor for class com.aliasi.test.unit.util.FastCacheTest

fatal(String) - Method in class com.aliasi.io.Reporter

Utility method for fatal-level reports.

fatalError(SAXParseException) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

fatalError(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

fatalError(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

featureActivationThreshold() - Method in class com.aliasi.classify.BernoulliClassifier

Returns the feature activation threshold.

featureExtractor() - Method in class com.aliasi.classify.BernoulliClassifier

Return the feature extractor for this classifier.

featureExtractor() - Method in class com.aliasi.classify.KnnClassifier

Returns the feature extractor for ths KNN classifier.

featureExtractor() - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns an immutable view of the feature extractor for this classifier.

featureExtractor() - Method in class com.aliasi.classify.PerceptronClassifier

Returns the feature extractor for this perceptron.

featureExtractor() - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Return the feature extractor for this classifier.

featureExtractor() - Method in class com.aliasi.cluster.KMeansClusterer

Returns the feature extractor for this clusterer.

featureExtractor() - Method in class com.aliasi.crf.ChainCrf

Return the feature extractor for this CRF.

featureExtractor() - Method in class com.aliasi.dca.DiscreteObjectChooser

Return the feature extractor for this chooser.

FeatureExtractor<E> - Interface in com.aliasi.util

A FeatureExtractor provides a method of converting generic input objects into feature vectors.

FeatureExtractorFilter<E> - Class in com.aliasi.features

A FeatureExtractorFilter contains a reference to another feature extractor.

FeatureExtractorFilter(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.FeatureExtractorFilter

Construct a feature extractor filter from the specified feature extractor.

features(E) - Method in class com.aliasi.features.AddFeatureExtractor

features(E) - Method in class com.aliasi.features.CacheFeatureExtractor

features(CharSequence) - Method in class com.aliasi.features.ChunkerFeatureExtractor

features(E) - Method in class com.aliasi.features.FeatureExtractorFilter

Return the features extracted by the contained feature extractor.

Features - Class in com.aliasi.features

The Features class contains static utility classes for manipulating features.

features(E) - Method in class com.aliasi.features.InteractionFeatureExtractor

Return the interaction feature map for the specified input.

features(E) - Method in class com.aliasi.features.LengthNormFeatureExtractor

Return a length-normalized feature version of the feature vector returned by the contained vector.

features(E) - Method in class com.aliasi.features.ModifiedFeatureExtractor

Return the modified form of the feature vector produced by the base feature extractor.

features(E) - Method in class com.aliasi.features.PrefixedFeatureExtractor

Return the feature map derived by prefixing the specified prefix to the feature names extracted by the base feature extractor.

features(CharSequence) - Method in class com.aliasi.features.StringLengthFeatureExtractor

features(E) - Method in class com.aliasi.features.ZScoreFeatureExtractor

Return the feature map resulting from converting the feature map produced by the underlying feature extractor to z-scores.

features(Integer) - Method in class com.aliasi.test.unit.features.SerializableMockFeatureExtractor

features(CharSequence) - Method in class com.aliasi.tokenizer.TokenFeatureExtractor

Return the feature vector for the specified character sequence.

features(E) - Method in interface com.aliasi.util.FeatureExtractor

Return the feature vector for the specified input.

featureSymbolTable() - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns an unmodifiable view of the symbol table used for features in this classifier.

featureSymbolTable() - Method in class com.aliasi.crf.ChainCrf

Returns an unmodifiable view of the symbol table for features for this CRF.

featureSymbolTable() - Method in class com.aliasi.dca.DiscreteObjectChooser

Returns an unmodifiable view of the feature symbol table underlying this chooser.

featureValues(String) - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns a mapping from features to their parameter values for the specified category.

FEMALE_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory

The gender for females.

FEMALE_HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory

The set of female honorifics.

FIBONACCI_SEQUENCE - Static variable in class com.aliasi.util.Math

An array of the Fibonacci sequence up the maximum value representable as a long integer.

FIELDSET - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element fieldset.

fieldset() - Method in class com.aliasi.xml.XHtmlWriter

Start an fieldset element with no attributes.

fieldset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an fieldset element with the specified attributes.

fieldset(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an fieldset element with the specified attribute and value.

fieldset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an fieldset element with the specified attributes and values.

fieldset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an fieldset element with the specified attributes and values.

fieldset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an fieldset element with the specified attributes and values.

file(File, String) - Static method in class com.aliasi.io.Reporters

Return a reporter that writes to the specified file using the specified encoding.

FileExtensionFilter - Class in com.aliasi.io

A file filter that accepts all base files with a suffix with a specified value or one of a set of specified values.

FileExtensionFilter(String[], boolean) - Constructor for class com.aliasi.io.FileExtensionFilter

Deprecated.

Use the variable-length argument version FileExtensionFilter.FileExtensionFilter(boolean,String[]) instead.

FileExtensionFilter(boolean, String...) - Constructor for class com.aliasi.io.FileExtensionFilter

Create a file filter that accepts files with the specified extensions, optionally accepting directories.

FileExtensionFilter(String, boolean) - Constructor for class com.aliasi.io.FileExtensionFilter

Create a file filter that accepts files with the specified extension, optionally accepting directories.

FileExtensionFilter(String) - Constructor for class com.aliasi.io.FileExtensionFilter

Create a file filter that accepts files with the specified extension and accepts all directories.

FileExtensionFilter(String...) - Constructor for class com.aliasi.io.FileExtensionFilter

Create a file filter that accepts files with the specified extensions and accepts all directories.

FileExtensionFilterTest - Class in com.aliasi.test.unit.io

FileExtensionFilterTest() - Constructor for class com.aliasi.test.unit.io.FileExtensionFilterTest

FileLineReader - Class in com.aliasi.io

A FileLineReader instance represents the lines of a file.

FileLineReader(File, String) - Constructor for class com.aliasi.io.FileLineReader

Construct a new file lines iterator from the specified file using the specified character encoding, assuming no compression.

FileLineReader(File, String, boolean) - Constructor for class com.aliasi.io.FileLineReader

Construct a new file lines iterator from the specified file using the specified character encoding, uncompressing gzipped input if the compresison flag is true.

fileNameFilter() - Method in class com.aliasi.io.FileExtensionFilter

Return the file name filter corresponding to this extension filter.

Files - Class in com.aliasi.util

Static utility methods for processing files.

FILES_ONLY_FILE_FILTER - Static variable in class com.aliasi.util.Files

A file filter that accepts all normal files, as specified by File.isFile().

filter(String, Number) - Method in class com.aliasi.features.BoundedFeatureExtractor

Return the bounded value corresponding to the specified value.

filter(String, Number) - Method in class com.aliasi.features.KnownFeatureExtractor

Returns the value if the feature is in the known feature set and null otherwise.

filter(String, Number) - Method in class com.aliasi.features.ModifiedFeatureExtractor

Return the value for the specified original feature and value, or null to remove the feature altogether.

filteredCharacters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter

Handle filtered character content.

filterElement(String) - Method in class com.aliasi.xml.TextContentFilter

Filter the text content of elements with the specified qualified name.

finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegateHandler

This method is called when this handler has finished delegating the specified element to the specified handler.

finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegatingHandler

This method will be called whenever the close tag for the specified element is found.

finite(String, double) - Static method in class com.aliasi.util.Exceptions

Throws an illegal argument exception if the specified value is not finite.

finiteNonNegative(String, double) - Static method in class com.aliasi.util.Exceptions

Throws an illegal argument exception if the specified value is not finite and non-negative, using the specified variable name in the report.

first() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the highest scoring object in the priority queue.

first() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the largest element in the queue.

firstCharEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the cost penalty for editing the first character in a token.

FixedWeightEditDistance - Class in com.aliasi.spell

A FixedWeightEditDistance sets constant weights for the edit operations for weighted edit distance.

FixedWeightEditDistance(double, double, double, double, double) - Constructor for class com.aliasi.spell.FixedWeightEditDistance

Construct a weighted edit distance with the specified constant weights for edits.

FixedWeightEditDistance() - Constructor for class com.aliasi.spell.FixedWeightEditDistance

Constructs an edit distance where the match weight is zero and all other weights are positive infinity.

FixedWeightEditDistanceTest - Class in com.aliasi.test.unit.spell

FixedWeightEditDistanceTest() - Constructor for class com.aliasi.test.unit.spell.FixedWeightEditDistanceTest

floatValue() - Method in class com.aliasi.util.Counter

Returns the value of this counter as a float.

flush() - Method in class com.aliasi.io.BitOutput

Flushes writes to the underlying output stream.

fMeasure() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the F₁ measure.

fMeasure(double) - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the Fβ value for the specified β.

fMeasure(double, double, double) - Static method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the F_β measure for a specified β, recall and precision values.

fold() - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Returns the current fold.

FONT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element font.

font() - Method in class com.aliasi.xml.XHtmlWriter

Start an font element with no attributes.

font(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an font element with the specified attributes.

font(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an font element with the specified attribute and value.

font(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an font element with the specified attributes and values.

font(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an font element with the specified attributes and values.

font(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an font element with the specified attributes and values.

FOR - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the for attribute.

forceFinalStop() - Method in class com.aliasi.sentences.HeuristicSentenceModel

Returns true if this model treats any input-final token as a stop.

FORM - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element form.

form() - Method in class com.aliasi.xml.XHtmlWriter

Start an form element with no attributes.

form(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an form element with the specified attributes.

form(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an form element with the specified attribute and value.

form(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an form element with the specified attributes and values.

form(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an form element with the specified attributes and values.

form(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an form element with the specified attributes and values.

ForwardBackwardTagLattice<E> - Class in com.aliasi.crf

The ForwardBackwardTagLattice provides an implementation of a tag lattice based on forward, backward, transition and normalizing values.

ForwardBackwardTagLattice(List<E>, List<String>, double[][], double[][], double[][][], double) - Constructor for class com.aliasi.crf.ForwardBackwardTagLattice

Construct a log tag lattice from the specified list of tokens, list of tags in order of symbol identifier along with log forward, backward, transition and normalizing values on a log probability scale.

ForwardBackwardTagLatticeTest - Class in com.aliasi.test.unit.crf

ForwardBackwardTagLatticeTest() - Constructor for class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

fowlkesMallows() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Return the Fowlkes-Mallows score.

FRAME - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element frame.

frame() - Method in class com.aliasi.xml.XHtmlWriter

Start an frame element with no attributes.

frame(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an frame element with the specified attributes.

frame(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frame element with the specified attribute and value.

frame(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frame element with the specified attributes and values.

frame(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frame element with the specified attributes and values.

frame(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frame element with the specified attributes and values.

FRAME_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the frame attribute.

FRAMESET - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element frameset.

frameset() - Method in class com.aliasi.xml.XHtmlWriter

Start an frameset element with no attributes.

frameset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an frameset element with the specified attributes.

frameset(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frameset element with the specified attribute and value.

frameset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frameset element with the specified attributes and values.

frameset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frameset element with the specified attributes and values.

frameset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an frameset element with the specified attributes and values.

frequentTermSet(int, int) - Method in class com.aliasi.lm.TokenizedLM

Returns the most frequent n-gram terms in the training data up to the specified maximum number.

functionArgs(String, Object[]) - Static method in class com.aliasi.util.Strings

Return a string representation of a function applied to its arguments.

functionArgsList(Object[]) - Static method in class com.aliasi.util.Strings

Returns a string representation of the specified array as a function's argument list.

G

gaussian(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior

Returns the Gaussian prior with the specified prior variance and indication of whether the intercept is given a noninformative prior.

gaussian(double[]) - Static method in class com.aliasi.stats.RegressionPrior

Returns the Gaussian prior with the specified priors for each dimension.

GaussianRadialBasisKernel - Class in com.aliasi.matrix

A GaussianRadialBasisKernel provides a kernel based on a Gaussian radial basis function with a fixed variance parameter.

GaussianRadialBasisKernel(double) - Constructor for class com.aliasi.matrix.GaussianRadialBasisKernel

Construct a Gaussian radial basis kernel with the specified radius of influence.

GaussianRadialBasisKernelTest - Class in com.aliasi.test.unit.matrix

GaussianRadialBasisKernelTest() - Constructor for class com.aliasi.test.unit.matrix.GaussianRadialBasisKernelTest

gender() - Method in class com.aliasi.coref.AbstractMentionChain

Returns the gender of this mention chain.

gender(String) - Method in class com.aliasi.coref.AbstractMentionFactory

Returns a string rerpesenting the gender entities with the specified entity type.

gender() - Method in class com.aliasi.coref.CachedMention

Returns a string representing the gender of this mention.

gender(String) - Method in class com.aliasi.coref.EnglishMentionFactory

Returns a string rerpesenting the gender entities with the specified entity type.

gender() - Method in interface com.aliasi.coref.Mention

Returns a string representing the gender of this mention.

gender() - Method in interface com.aliasi.coref.MentionChain

Returns the gender for this mention chain.

GenderKiller - Class in com.aliasi.coref.matchers

Implements a killing function that defeats a match of a mention against a mention chain with an incompatible gender.

GenderKiller() - Constructor for class com.aliasi.coref.matchers.GenderKiller

Construct a new gender killer.

GenderKillerTest - Class in com.aliasi.test.unit.coref.matchers

GenderKillerTest() - Constructor for class com.aliasi.test.unit.coref.matchers.GenderKillerTest

get(Object) - Method in class com.aliasi.util.BinaryMap

Returns the Integer with value 1 if the specified argument is mapped to 1 by this map, and returns null otherwise.

get(Object) - Method in class com.aliasi.util.FastCache

Returns the value of the specified key or null if there is no value attached.

get(Object) - Method in class com.aliasi.util.HardFastCache

Returns the value of the specified key or null if there is no value attached.

get(int) - Method in class com.aliasi.util.Tuple

Returns the object at the specified index in the tuple.

getArgument(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the command-line argument with the specified key, or the value of the key in the default properties, or null if it does not exist.

getArgumentCreatableFile(String) - Method in class com.aliasi.util.AbstractCommand

Returns the model file specified by the command line after guaranteeing that the file can be created.

getArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the argument with the specified key converted to a directory.

getArgumentDouble(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the argument with the specified key converted to a double value.

getArgumentExistingNormalFile(String) - Method in class com.aliasi.util.AbstractCommand

Returns the existing normal file named by the value of the specified key.

getArgumentFile(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the argument with the specified key converted to a file.

getArgumentInt(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the argument with the specified key converted to an integer value.

getArgumentLong(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the argument with the specified key converted to a long value.

getArguments() - Method in class com.aliasi.util.AbstractCommand

Returns the complete list of command-line parameters for this abstract command.

getArray() - Method in class com.aliasi.util.CommaSeparatedValues

Returns the underlying array for this comma-separated values object.

getAttributesStack() - Method in class com.aliasi.xml.ElementStackFilter

Returns an unmodifiable view of the stack of attributes associated with the stack of elements.

getBareArgument(int) - Method in class com.aliasi.util.AbstractCommand

Returns the specified bare argument.

getCalls() - Method in class com.aliasi.test.unit.MockObjectHelper

getCalls() - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

Return the array of calls to this object, as described in the class documentation.

getCharEncoding() - Method in class com.aliasi.corpus.DiskCorpus

Returns the current character encoding, or null if none has been specified.

getClassification() - Method in class com.aliasi.classify.Classified

Return the classification of the object.

getClassification() - Method in class com.aliasi.classify.RankedClassified

Return the classification of the object.

getCount(long) - Method in class com.aliasi.stats.MultivariateEstimator

Returns the count in this estimator for the specified outcome.

getCount(String) - Method in class com.aliasi.stats.MultivariateEstimator

Returns the count for the specified outcome.

getCount(E) - Method in class com.aliasi.util.ObjectToCounterMap

Returns the current count value for the specified key.

getDecoder() - Method in class com.aliasi.chunk.HmmChunker

Returns the underlying hidden Markov model decoder for this chunker.

getDefaultJavaCharset() - Static method in class com.aliasi.util.Streams

Returns Java's canonical name of the default character set for the system's current default locale.

getDelegate(String) - Method in class com.aliasi.xml.DelegatingHandler

Returns the delegate for the specified qualified element name.

getElementStack() - Method in class com.aliasi.xml.ElementStackFilter

Returns an unmodifiable view of the stack of qualified names of elements.

getExistingArgument(String) - Method in class com.aliasi.util.AbstractCommand

Returns the same value as AbstractCommand.getArgument(String), but throws an exception if the argument does not exist.

getHandler() - Method in class com.aliasi.corpus.Parser

Returns the current content handler.

getHmm() - Method in class com.aliasi.hmm.HmmDecoder

Returns the hidden Markov model underlying this decoder.

getHmmEstimator() - Method in class com.aliasi.chunk.CharLmHmmChunker

Returns the underlying hidden Markov model estimator for this chunker estimator.

getIndex(String) - Method in class com.aliasi.classify.ConfusionMatrix

Return the index of the specified category in the list of categories, or -1 if it is not a category for this confusion matrix.

getLambdaFactor() - Method in class com.aliasi.lm.NGramProcessLM

Returns the current setting of the interpolation ratio hyperparameter.

getLastCaseReport() - Method in class com.aliasi.spell.SpellEvaluator

Returns a string-based representation of the last test case.

getLevel() - Method in class com.aliasi.io.Reporter

Return the log level for this reporter.

getMaxDistance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer

Returns the maximum distance for clusters in a dendrogram.

getObject() - Method in class com.aliasi.classify.Classified

Return the object that is classified.

getObject() - Method in class com.aliasi.util.ScoredObject

Returns the object attached to this scored object.

getOrAddSymbol(String) - Method in class com.aliasi.symbol.MapSymbolTable

Returns the identifier for the specified symbol, adding it to the symbol table if necessary.

getOrAddSymbol(String) - Method in interface com.aliasi.symbol.SymbolTable

Returns the identifier for the specified symbol.

getOrAddSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler

Throws an unsupported operation exception.

getOrAddSymbolInteger(String) - Method in class com.aliasi.symbol.MapSymbolTable

Returns the integer identifier for the specified symbol, adding it to the symbol table if necessary.

getOrCreateArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand

Returns the value of the argument with the specified key converted to a directory.

getPattern() - Method in class com.aliasi.tokenizer.RegExFilteredTokenizerFactory

Returns the pattern for this regex-filtered tokenizer.

getProcessLM() - Method in class com.aliasi.lm.NGramBoundaryLM

Returns the underlying n-gram process language model for this boundary language model.

getSet(K) - Method in class com.aliasi.util.ObjectToSet

Returns the set of values for the specified key, or the empty set if there have been none added.

getSystemId() - Method in class com.aliasi.corpus.DiskCorpus

Return the system identifier for this corpus or null if none has been specified.

getText() - Method in class com.aliasi.xml.TextAccumulatorHandler

Returns the text thus far accumulated.

getTokenizerFactory() - Method in class com.aliasi.chunk.CharLmHmmChunker

Return the tokenizer factory for this chunker.

getTokenizerFactory() - Method in class com.aliasi.chunk.HmmChunker

Returns the underlying tokenizer factory for this chunker.

getValue(E) - Method in class com.aliasi.util.ObjectToDoubleMap

Returns the value of the specified key in the map.

getXMLHandler() - Method in class com.aliasi.corpus.XMLParser

Return the default handler for SAX events.

gibbsSample(int[][], short, double, double, Random) - Static method in class com.aliasi.cluster.LatentDirichletAllocation

Return an iterator over Gibbs samples for the specified document-word corpus, number of topics, priors and randomizer.

gibbsSampler(int[][], short, double, double, int, int, int, Random, ObjectHandler<LatentDirichletAllocation.GibbsSample>) - Static method in class com.aliasi.cluster.LatentDirichletAllocation

Run Gibbs sampling for the specified multinomial data, number of topics, priors, search parameters, randomization and callback sample handler.

globalEstimator() - Method in class com.aliasi.stats.PotentialScaleReduction

Returns the estimator that pools the estimates across the chains.

GOLDEN_RATIO - Static variable in class com.aliasi.util.Math

The value of the golden ratio.

gradient(double, int) - Method in class com.aliasi.stats.RegressionPrior

Returns the contribution to the gradient of the error function of the specified parameter value for the specified dimension.

GroupCharactersFilter - Class in com.aliasi.xml

Provides a SAX filter that groups sequential calls to GroupCharactersFilter.characters(char[],int,int) into a single call with all of the content concatenated.

GroupCharactersFilter(DefaultHandler) - Constructor for class com.aliasi.xml.GroupCharactersFilter

Construct a character grouping filter that delegates events to the specified handler.

GroupCharactersFilter(DefaultHandler, boolean) - Constructor for class com.aliasi.xml.GroupCharactersFilter

Construct a character grouping filter without a specified handler to which to delegate events.

GroupCharactersFilterTest - Class in com.aliasi.test.unit.xml

GroupCharactersFilterTest() - Constructor for class com.aliasi.test.unit.xml.GroupCharactersFilterTest

H

H1 - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element h1.

h1() - Method in class com.aliasi.xml.XHtmlWriter

Start an h1 element with no attributes.

h1(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an h1 element with the specified attributes.

h1(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h1 element with the specified attribute and value.

h1(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h1 element with the specified attributes and values.

h1(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h1 element with the specified attributes and values.

h1(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h1 element with the specified attributes and values.

H2 - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element h2.

h2() - Method in class com.aliasi.xml.XHtmlWriter

Start an h2 element with no attributes.

h2(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an h2 element with the specified attributes.

h2(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h2 element with the specified attribute and value.

h2(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h2 element with the specified attributes and values.

h2(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h2 element with the specified attributes and values.

h2(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h2 element with the specified attributes and values.

H3 - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element h3.

h3() - Method in class com.aliasi.xml.XHtmlWriter

Start an h3 element with no attributes.

h3(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an h3 element with the specified attributes.

h3(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h3 element with the specified attribute and value.

h3(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h3 element with the specified attributes and values.

h3(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h3 element with the specified attributes and values.

h3(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h3 element with the specified attributes and values.

H4 - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element h4.

h4() - Method in class com.aliasi.xml.XHtmlWriter

Start an h4 element with no attributes.

h4(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an h4 element with the specified attributes.

h4(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h4 element with the specified attribute and value.

h4(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h4 element with the specified attributes and values.

h4(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h4 element with the specified attributes and values.

h4(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h4 element with the specified attributes and values.

H5 - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element h5.

h5() - Method in class com.aliasi.xml.XHtmlWriter

Start an h5 element with no attributes.

h5(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an h5 element with the specified attributes.

h5(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h5 element with the specified attribute and value.

h5(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h5 element with the specified attributes and values.

h5(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h5 element with the specified attributes and values.

h5(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h5 element with the specified attributes and values.

H6 - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element h6.

h6() - Method in class com.aliasi.xml.XHtmlWriter

Start an h6 element with no attributes.

h6(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an h6 element with the specified attributes.

h6(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h6 element with the specified attribute and value.

h6(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h6 element with the specified attributes and values.

h6(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h6 element with the specified attributes and values.

h6(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an h6 element with the specified attributes and values.

HammerFastCache - Class in com.aliasi.test.unit.util

HammerFastCache() - Constructor for class com.aliasi.test.unit.util.HammerFastCache

handle(Chunking) - Method in class com.aliasi.chunk.CharLmHmmChunker

Handle the specified chunking by tokenizing it, assigning tags and training the underlying hidden Markov model.

handle(Chunking) - Method in class com.aliasi.chunk.CharLmRescoringChunker

Trains this chunker with the specified chunking.

handle(Chunking) - Method in class com.aliasi.chunk.ChunkerEvaluator

Handle the specified reference chunking.

handle(Chunking) - Method in class com.aliasi.chunk.TrainTokenShapeChunker

Add the specified chunking as a training event.

handle(Classified<E>) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Add the specified classified object to this evaluator.

handle(Classified<E>) - Method in class com.aliasi.classify.BernoulliClassifier

Handle the specified training classified object.

handle(Classified<CharSequence>) - Method in class com.aliasi.classify.BinaryLMClassifier

Train this classifier using the character sequence from the specified classified object if the best category of the classification is the accept category for this binary classifier.

handle(Classified<E>) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator

handle(Classified<CharSequence>) - Method in class com.aliasi.classify.DynamicLMClassifier

Provides a training instance for the specified character sequence using the best category from the specified classification.

handle(Classified<E>) - Method in class com.aliasi.classify.KnnClassifier

Handle the specified classified object as a training instance.

handle(Classified<E>) - Method in class com.aliasi.classify.RankedClassifierEvaluator

handle(Classified<E>) - Method in class com.aliasi.classify.ScoredClassifierEvaluator

handle(Classified<E>) - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Handle the specified classified object as training data.

handle(Classified<CharSequence>) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Trains the classifier with the specified classified character sequence.

handle(E) - Method in interface com.aliasi.corpus.ObjectHandler

Handle the specified object.

handle(E) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Add the specified item to the end of the corpus.

handle(Tagging<String>) - Method in class com.aliasi.hmm.AbstractHmmEstimator

Train the estimator with the specified tokens, whitespaces and states.

handle(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM

Train the language model on the specified character sequence.

handle(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM

Implements the object handler interface over character sequences for training.

handle(CharSequence) - Method in class com.aliasi.lm.TokenizedLM

Trains the language model on the specified character sequence.

handle(CharSequence) - Method in class com.aliasi.lm.UniformBoundaryLM

This method for training a character sequence is supplied for compatibility with the dynamic language model interface, but is implemented to do nothing.

handle(CharSequence) - Method in class com.aliasi.lm.UniformProcessLM

This method for training a character sequence is supplied for compatibility with the dynamic language model interface, but is implemented to do nothing.

handle(Chunking) - Method in class com.aliasi.sentences.SentenceEvaluator

Handle the specified reference chunking by extracting its character sequence, producing a response chunking from the contained sentence chunker, and adding the reference and result to the evaluation.

handle(CharSequence) - Method in class com.aliasi.spell.TfIdfDistance

Add the specified character sequence as a document for training.

handle(CharSequence) - Method in class com.aliasi.spell.TrainSpellChecker

Train the spell checker on the specified character sequence.

handle(double) - Method in class com.aliasi.stats.OnlineNormalEstimator

Add the specified value to the collection of samples for this estimator.

handle(Tagging<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Add a test case consisting of the specified reference tagging along with the lattice output of the marginal tagger being evaluated on the tokens of the reference tagging.

handle(Tagging<E>) - Method in class com.aliasi.tag.NBestTaggerEvaluator

Add the specified reference tagging as a test case, with a response tagging computed by the contained n-best tagger.

handle(Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator

Add a case for the specified reference tagging using the contained tagger to generate a response tagging.

handle(HmmCharLmEstimator, String[], String[], String[]) - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

handleNGrams(int, int, ObjectHandler<String[]>) - Method in class com.aliasi.lm.TokenizedLM

Visits the n-grams of the specified length with at least the specified minimum count stored in the underlying counter of this tokenized language model and passes them to the specified handler.

handleNGrams(int, int, ObjectHandler<int[]>) - Method in class com.aliasi.lm.TrieIntSeqCounter

Supplies each n-gram of the specified length and with greater than or equal to the specified minimum count to the specified handler.

Handler - Interface in com.aliasi.corpus

The Handler marker interface indicates that a class will be implement a handle method appropriate for a particular Parser.

HardFastCache<K,V> - Class in com.aliasi.util

A HardFastCache is a map implemented with hard references, optimistic copy-on-write updates, and approximate count-based pruning.

HardFastCache(int) - Constructor for class com.aliasi.util.HardFastCache

Constrcut a fast cache of the specified size and default load factor.

HardFastCache(int, double) - Constructor for class com.aliasi.util.HardFastCache

Construct a fast cache of the specified size and load factor.

HardFastCacheTest - Class in com.aliasi.test.unit.util

HardFastCacheTest() - Constructor for class com.aliasi.test.unit.util.HardFastCacheTest

HAS_PROPERTY_VALUE - Static variable in class com.aliasi.util.AbstractCommand

The value assigned to arguments beginning with '-' and not containing an '='.

hasArgument(String) - Method in class com.aliasi.util.AbstractCommand

Returns true if there is a command-line argument specified for the key.

hasFlag(String) - Method in class com.aliasi.util.AbstractCommand

Returns true if the arguments set the specified flag.

hashCode() - Method in interface com.aliasi.chunk.Chunk

Returns this chunk's hash code.

hashCode() - Method in class com.aliasi.chunk.ChunkAndCharSeq

Returns the cached hash code for this chunk and character sequence.

hashCode() - Method in interface com.aliasi.chunk.Chunking

Returns the hash code for this chunking.

hashCode() - Method in class com.aliasi.chunk.ChunkingImpl

hashCode(Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl

Returns the hash code for the specified chunking.

hashCode() - Method in class com.aliasi.coref.AbstractMentionChain

Returns the hash code for this mention chain.

hashCode() - Method in class com.aliasi.dict.DictionaryEntry

Returns the hash code for this entry.

hashCode() - Method in class com.aliasi.matrix.AbstractMatrix

Returns a hash code as specified in the Matrix interface's documentation.

hashCode() - Method in class com.aliasi.matrix.AbstractVector

Returns the hash code for this vector according to the specification.

hashCode() - Method in interface com.aliasi.matrix.Matrix

Return the hash code for the matrix.

hashCode() - Method in class com.aliasi.matrix.SparseFloatVector

Returns the hash code for this sparse float vector.

hashCode() - Method in interface com.aliasi.matrix.Vector

Return the hash code for this vector.

hashCode() - Method in class com.aliasi.tag.StringTagging

Returns a hash code computed from the underlying string and tags.

hashCode() - Method in class com.aliasi.tokenizer.Tokenization

Returns the hash code for this tokenization.

hashCode() - Method in class com.aliasi.util.Pair

Returns the hash code of the pair.

hashCode(CharSequence) - Static method in class com.aliasi.util.Strings

Returns a hash code for a character sequence that is equivalent to the hash code generated for a its string yield.

hashCode() - Method in class com.aliasi.util.Tuple

Returns the hash code for this list.

hasNext() - Method in class com.aliasi.util.Iterators.Buffered

Returns true if the next call to Iterators.Buffered.next() will return a non-null value.

hasNext() - Method in class com.aliasi.util.Iterators.Filter

Returns true if calls to next() will return a value.

hasNext() - Method in class com.aliasi.util.Iterators.Modifier

Returns true if the underlying iterator has more elements.

hasNext() - Method in class com.aliasi.util.Iterators.PrimitiveInt

Returns true if there is another integer in the iteration.

hasProperty(String) - Method in class com.aliasi.util.AbstractCommand

Returns true if the arguments have the specified property defined.

hasZeroDiagonal(Matrix) - Static method in class com.aliasi.matrix.Matrices

Returns true if the specified matrix has only zero values on its diagonal.

HEAD - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element head.

head() - Method in class com.aliasi.xml.XHtmlWriter

Start an head element with no attributes.

head(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an head element with the specified attributes.

head(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an head element with the specified attribute and value.

head(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an head element with the specified attributes and values.

head(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an head element with the specified attributes and values.

head(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an head element with the specified attributes and values.

HEADERS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the headers attribute.

headSet(E) - Method in class com.aliasi.util.BoundedPriorityQueue

Return the set of elements in this queue strictly less than the specified element according to the comparator for this queue.

headSet(E) - Method in class com.aliasi.util.ShortPriorityQueue

Return the set of elements in this queue strictly less than the specified element according to the comparator for this queue.

HEIGHT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the height attribute.

HeuristicSentenceModel - Class in com.aliasi.sentences

A HeuristicSentenceModel determines sentence boundaries based on sets of tokens, a pair of flags, and an overridable method describing boundary conditions.

HeuristicSentenceModel(Set<String>, Set<String>, Set<String>) - Constructor for class com.aliasi.sentences.HeuristicSentenceModel

Constructs a capitalization-sensitive heuristic sentence model with the specified set of possible stop tokens, impossible penultimate tokens, and impossible sentence start tokens.

HeuristicSentenceModel(Set<String>, Set<String>, Set<String>, boolean, boolean) - Constructor for class com.aliasi.sentences.HeuristicSentenceModel

Construct a heuristic sentence model with the specified sets of possible stop tokens, impossible penultimate tokens, impossible start tokens, and flags for whether the final token is forced to be a stop, and whether parentheses are balanced.

HeuristicSentenceModelTest - Class in com.aliasi.test.unit.sentences

HeuristicSentenceModelTest() - Constructor for class com.aliasi.test.unit.sentences.HeuristicSentenceModelTest

HiddenMarkovModel - Interface in com.aliasi.hmm

The HiddenMarkovModel interface provides a means for definining the probability estimates and symbol table underlying a hidden Markov model (HMM).

hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer

Returns the array of clusters derived from performing clustering with this class's specified maximum distance.

hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.CompleteLinkClusterer

hierarchicalCluster(Set<? extends E>) - Method in interface com.aliasi.cluster.HierarchicalClusterer

Return the dendrogram representing the complete hierarchical clustering of the specified elements.

hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.SingleLinkClusterer

Return the array of clusters derived from the specified distance matrix by performing single-link clustering up to the specified maximum distance bound.

HierarchicalClusterer<E> - Interface in com.aliasi.cluster

The HierarchicalClusterer interface defines a means of clustering a set of objects into a hierarchy of clusters.

HmmCharLmEstimator - Class in com.aliasi.hmm

An HmmCharLmEstimator employs a maximum a posteriori transition estimator and a bounded character language model emission estimator.

HmmCharLmEstimator() - Constructor for class com.aliasi.hmm.HmmCharLmEstimator

Construct an HMM estimator with default parameter settings.

HmmCharLmEstimator(int, int, double) - Constructor for class com.aliasi.hmm.HmmCharLmEstimator

Construct an HMM estimator with the specified maximum character n-gram size, maximum number of characters in the data, and character n-gram interpolation parameter, with no state smoothing.

HmmCharLmEstimator(int, int, double, boolean) - Constructor for class com.aliasi.hmm.HmmCharLmEstimator

Construct an HMM estimator with the specified maximum character n-gram size, maximum number of characters in the data, character n-gram interpolation parameter, and state smoothing.

HmmCharLmEstimatorTest - Class in com.aliasi.test.unit.hmm

HmmCharLmEstimatorTest() - Constructor for class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

HmmChunker - Class in com.aliasi.chunk

An HmmChunker uses a hidden Markov model to perform chunking over tokenized character sequences.

HmmChunker(TokenizerFactory, HmmDecoder) - Constructor for class com.aliasi.chunk.HmmChunker

Construct a chunker from the specified tokenizer factory and hidden Markov model decoder.

HmmDecoder - Class in com.aliasi.hmm

An HmmDecoder provides implementations of first-best, n-best and marginal taggers for hidden Markov models (HMMs).

HmmDecoder(HiddenMarkovModel) - Constructor for class com.aliasi.hmm.HmmDecoder

Construct an HMM decoder from the specified HMM.

HmmDecoder(HiddenMarkovModel, Map<String, double[]>, Map<String, double[]>) - Constructor for class com.aliasi.hmm.HmmDecoder

Construct an HMM decoder from the specified HMM using the specified caches for linear and log probabilities.

HmmDecoder(HiddenMarkovModel, Map<String, double[]>, Map<String, double[]>, double, double) - Constructor for class com.aliasi.hmm.HmmDecoder

Construct an HMM decoder from the specified HMM using the specified caches for linear and log probabilities, with the specified beam width for emission estimates.

HmmDecoderTest - Class in com.aliasi.test.unit.hmm

HmmDecoderTest() - Constructor for class com.aliasi.test.unit.hmm.HmmDecoderTest

HonorificConflictKiller - Class in com.aliasi.coref.matchers

Implements a killing function that defeats a match of a mention against a mention chain with an incompatible honorific.

HonorificConflictKiller() - Constructor for class com.aliasi.coref.matchers.HonorificConflictKiller

Construct a new honorific killer.

HonorificConflictKillerTest - Class in com.aliasi.test.unit.coref.matchers

HonorificConflictKillerTest() - Constructor for class com.aliasi.test.unit.coref.matchers.HonorificConflictKillerTest

honorifics() - Method in class com.aliasi.coref.AbstractMentionChain

Returns the set of honorifics for this mention chain.

honorifics() - Method in class com.aliasi.coref.CachedMention

Returns the set of honorifics which occur in this mention.

HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory

The complete set of male, female, and generic honorifics.

honorifics() - Method in interface com.aliasi.coref.Mention

Returns the set of honorifics which occur in this mention.

honorifics() - Method in interface com.aliasi.coref.MentionChain

Honorific phrases attached to instances of this mention chain.

HR - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element hr.

hr() - Method in class com.aliasi.xml.XHtmlWriter

Start an hr element with no attributes.

hr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an hr element with the specified attributes.

hr(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an hr element with the specified attribute and value.

hr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an hr element with the specified attributes and values.

hr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an hr element with the specified attributes and values.

hr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an hr element with the specified attributes and values.

HREF - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the href attribute.

HREFLANG - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the hreflang attribute.

HTML - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element html.

html() - Method in class com.aliasi.xml.XHtmlWriter

Start an html element with no attributes.

html(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an html element with the specified attributes.

html(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an html element with the specified attribute and value.

html(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an html element with the specified attributes and values.

html(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an html element with the specified attributes and values.

html(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an html element with the specified attributes and values.

HTTP_EQUIV - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the http-equiv attribute.

HyperbolicTangentKernel - Class in com.aliasi.matrix

A HyperbolicTangentKernel provides a kernel based on the hyperbolic tangent of a dot product with fixed linear scaling.

HyperbolicTangentKernel(double, double) - Constructor for class com.aliasi.matrix.HyperbolicTangentKernel

Construct a linearly offset hyperbolic tangent kernel with the specified slope and intercept parameters.

HyperbolicTangentKernelTest - Class in com.aliasi.test.unit.matrix

HyperbolicTangentKernelTest() - Constructor for class com.aliasi.test.unit.matrix.HyperbolicTangentKernelTest

I

I - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element i.

i() - Method in class com.aliasi.xml.XHtmlWriter

Start an i element with no attributes.

i(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an i element with the specified attributes.

i(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an i element with the specified attribute and value.

i(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an i element with the specified attributes and values.

i(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an i element with the specified attributes and values.

i(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an i element with the specified attributes and values.

ID - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the id attribute.

identifier() - Method in class com.aliasi.coref.AbstractMentionChain

Returns the unique identifier for this mention chain.

identifier() - Method in interface com.aliasi.coref.MentionChain

The unique identifier for this mention chain (within a document).

idf(String) - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Returns the inverse document frequency of the specified feature.

idf(String) - Method in class com.aliasi.spell.TfIdfDistance

Return the inverse-document frequency for the specified term.

idSet() - Method in class com.aliasi.symbol.MapSymbolTable

Returns the complete set of ids in this symbol table.

idToSymbol(Integer) - Method in class com.aliasi.symbol.MapSymbolTable

Returns the symbol for the specified identifier.

idToSymbol(int) - Method in class com.aliasi.symbol.MapSymbolTable

idToSymbol(int) - Method in interface com.aliasi.symbol.SymbolTable

Return the symbol corresponding to the specified identifier.

idToSymbol(int) - Method in class com.aliasi.symbol.SymbolTableCompiler

Return the symbol corresponding to the specified identifier.

IFRAME - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element iframe.

iframe() - Method in class com.aliasi.xml.XHtmlWriter

Start an iframe element with no attributes.

iframe(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an iframe element with the specified attributes.

iframe(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an iframe element with the specified attribute and value.

iframe(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an iframe element with the specified attributes and values.

iframe(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an iframe element with the specified attributes and values.

iframe(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an iframe element with the specified attributes and values.

ignorableWhitespace(char[], int, int) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler

Call ignored.

ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.SAXWriter

Does not print ignorable whitespace.

illegalArgument(String, String) - Method in class com.aliasi.util.AbstractCommand

Throw an illegal argument exception with the specified message and a report of the argument found.

illegalArgument(String, Exception) - Method in class com.aliasi.util.AbstractCommand

Throw an illegal argument exception with the specified message with a source provided by the specified exception.

illegalArgument(String) - Method in class com.aliasi.util.AbstractCommand

Throw an illegal argument exception with the specified message.

illegalPropertyArgument(String, String) - Method in class com.aliasi.util.AbstractCommand

Throw an illegal argument message with the specified message and a report of the specified key and its value.

IMG - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element img.

img() - Method in class com.aliasi.xml.XHtmlWriter

Start an img element with no attributes.

img(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an img element with the specified attributes.

img(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an img element with the specified attribute and value.

img(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an img element with the specified attributes and values.

img(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an img element with the specified attributes and values.

img(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an img element with the specified attributes and values.

IN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec

Default prefix for continuation tags, "I_".

incorrectResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of cases where the response is incorrect.

increment(int, int) - Method in class com.aliasi.classify.ConfusionMatrix

Add one to the cell in the matrix for the specified reference and response category indices.

increment(String, String) - Method in class com.aliasi.classify.ConfusionMatrix

Add one to the cell in the matrix for the specified reference and response categories.

increment(double, Vector) - Method in class com.aliasi.matrix.AbstractVector

Adds the specified vector multiplied by the specified scalar to this vector.

increment(double, Vector) - Method in class com.aliasi.matrix.DenseVector

Adds the specified vector multiplied by the specified scalar to this vector.

increment(double, Vector) - Method in class com.aliasi.matrix.SparseFloatVector

This operation is not supported for sparse vectors.

increment(double, Vector) - Method in interface com.aliasi.matrix.Vector

Adds the specified vector multiplied by the specified scalar to this vector.

increment() - Method in class com.aliasi.util.Counter

Increments the current count value.

increment(int) - Method in class com.aliasi.util.Counter

Increment the count value by the specified amount.

increment(E) - Method in class com.aliasi.util.ObjectToCounterMap

Increment the value of the specified key by 1.

increment(E, int) - Method in class com.aliasi.util.ObjectToCounterMap

Increment the value of the specified key by the specified amount.

increment(E, double) - Method in class com.aliasi.util.ObjectToDoubleMap

Increment the value of the specified key by the specified increment amount.

incrementByN(int, int, int) - Method in class com.aliasi.classify.ConfusionMatrix

Add n to the cell in the matrix for the specified reference and response category indices.

incrementPrefixes(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Increments the count of all prefixes of the specified character sequence up to the maximum length specified in the constructor.

incrementPrefixes(char[], int, int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Increments the count of all prefixes of the specified character sequence up to the maximum length specified in the constructor.

incrementSequence(int[], int, int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

Increments the count for the specified slice by the specified amount.

incrementSubsequences(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

Increments the count for all subsequences of the specified integer sequence up to the specified maximum length.

incrementSubsequences(int[], int, int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

Increments the count for all subsequences of the specified integer sequence up to the specified maximum length with the specified count.

incrementSubstrings(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Increments the count of all substrings of the specified character array slice up to the maximum length specified in the constructor.

incrementSubstrings(char[], int, int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Increments by the specified count all substrings of the specified character array slice up to the maximum length specified in the constructor.

incrementSubstrings(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter

Increments the count of all substrings of the specified character sequence up to the maximum length specified in the constructor.

incrementSubstrings(CharSequence, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Increments by the specified count all substrings of the specified character sequence up to the maximum length specified in the constructor.

indent(StringBuilder, int) - Static method in class com.aliasi.util.Strings

Appends an ``indentation'' to the specified string buffer, consisting of a newline character and the specified number of space characters to the specified string buffer.

IndoEuropean - Class in com.aliasi.test.unit.tokenizer

IndoEuropean() - Constructor for class com.aliasi.test.unit.tokenizer.IndoEuropean

IndoEuropeanSentenceModel - Class in com.aliasi.sentences

An IndoEuropeanSentenceModel is a heuristic sentence designed primarily for English.

IndoEuropeanSentenceModel() - Constructor for class com.aliasi.sentences.IndoEuropeanSentenceModel

Construct an Indo-European sentence model that does not force the final token to be a stop and does not balance parentheses.

IndoEuropeanSentenceModel(boolean, boolean) - Constructor for class com.aliasi.sentences.IndoEuropeanSentenceModel

Construct an Indo-European sentence model that forces final tokens and balances parentheses according to the specified flags.

IndoEuropeanSentenceModelTest - Class in com.aliasi.test.unit.sentences

IndoEuropeanSentenceModelTest() - Constructor for class com.aliasi.test.unit.sentences.IndoEuropeanSentenceModelTest

IndoEuropeanTokenCategorizer - Class in com.aliasi.tokenizer

A IndoEuropeanTokenCategorizer is a generic token categorizer for Indo-European languages that is based on character "shape".

IndoEuropeanTokenCategorizerTest - Class in com.aliasi.test.unit.tokenizer

IndoEuropeanTokenCategorizerTest() - Constructor for class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenCategorizerTest

IndoEuropeanTokenizerFactory - Class in com.aliasi.tokenizer

An IndoEuropeanTokenizerFactory creates tokenizers with built-in support for alpha-numerics, numbers, and other common constructs in Indo-European langauges.

IndoEuropeanTokenizerFactory() - Constructor for class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory

Construct a tokenizer for Indo-European languages.

IndoEuropeanTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

IndoEuropeanTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenizerFactoryTest

info(String) - Method in class com.aliasi.io.Reporter

Utility method for info-level reports.

infrequentTermSet(int, int) - Method in class com.aliasi.lm.TokenizedLM

Returns the least frequent n-gram terms in the training data up to the specified maximum number.

INPUT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element input.

input() - Method in class com.aliasi.xml.XHtmlWriter

Start an input element with no attributes.

input(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an input element with the specified attributes.

input(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an input element with the specified attribute and value.

input(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an input element with the specified attributes and values.

input(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an input element with the specified attributes and values.

input(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an input element with the specified attributes and values.

inputSizeHistogram() - Method in class com.aliasi.tag.TaggerEvaluator

Returns a mapping from integers to the number of test cases with that many tokens.

InputSourceParser<H extends Handler> - Class in com.aliasi.corpus

An InputSourceParser is an abstract parser based on an abstract method for parsing from an input source.

InputSourceParser() - Constructor for class com.aliasi.corpus.InputSourceParser

Construct an input source parser with no specified handler.

InputSourceParser(H) - Constructor for class com.aliasi.corpus.InputSourceParser

Construct an input source parser with the specified handler.

INS - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element ins.

ins() - Method in class com.aliasi.xml.XHtmlWriter

Start an ins element with no attributes.

ins(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an ins element with the specified attributes.

ins(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ins element with the specified attribute and value.

ins(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ins element with the specified attributes and values.

ins(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ins element with the specified attributes and values.

ins(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ins element with the specified attributes and values.

insertCost(String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch

Returns the cost to insert the specified token.

insertWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance

Returns the constant weight of inserting the specified character.

insertWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weight of inserting the specified character.

INSTANCE - Static variable in class com.aliasi.sentences.MedlineSentenceModel

A single instance which may be used anywhere a MEDLINE sentence model is needed.

INSTANCE - Static variable in class com.aliasi.tokenizer.CharacterTokenizerFactory

An instance of a character tokenizer factory, which may be used wherever a character tokenizer factory is needed.

INSTANCE - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory

The singleton instance of an Indo-European tokenizer factory.

INSTANCE - Static variable in class com.aliasi.tokenizer.LineTokenizerFactory

A reusable instance of this class.

intArray(int[]) - Static method in class com.aliasi.util.Iterators

Returns an iterator over the array of primitive integers specified.

integersFollowing(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter

Returns an array of the integers that follow the specified integer array slice.

integersFollowing(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

InteractionFeatureExtractor<E> - Class in com.aliasi.features

An InteractionFeatureExtractor produces interaction features between two feature extractors.

InteractionFeatureExtractor(String, String, FeatureExtractor<E>, FeatureExtractor<E>) - Constructor for class com.aliasi.features.InteractionFeatureExtractor

Construct a feature extractor for interactions between the features extracted by the specified extractors, creating new features with the specified prefix and separator.

InteractionFeatureExtractor(String, String, FeatureExtractor<E>) - Constructor for class com.aliasi.features.InteractionFeatureExtractor

Construct a feature extractor for interactions between the features extracted by the specified extractor, creating new features with the specified prefix and separator.

InteractionFeatureExtractorTest - Class in com.aliasi.test.unit.features

InteractionFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.InteractionFeatureExtractorTest

INTERCEPT_FEATURE_NAME - Static variable in class com.aliasi.classify.LogisticRegressionClassifier

The name of the feature used for intercepts, *&^INTERCEPT%$^&**.

intRange(int) - Static method in class com.aliasi.util.Iterators

Construct an Integer iterator from 0 (inclusive) the specified end point (exclusive).

intRange(int, int) - Static method in class com.aliasi.util.Iterators

Returns a newly constructed primitive integer iterator that iterates from the start (inclusive) to end (exclusive).

IntSeqCounter - Interface in com.aliasi.lm

An IntSeqCounter provides counts for sequences of integers.

intValue() - Method in class com.aliasi.util.Counter

Returns the value of this counter as an int.

inverse(double, double) - Static method in class com.aliasi.stats.AnnealingSchedule

Return the inverse annealing schedule with the specified initial learning rate and annealing rate.

IoTagChunkCodec - Class in com.aliasi.chunk

The IoTagChunkCodec implements a chunk to tag coder/decoder based on the IO encoding scheme and a specified tokenizer factory.

IoTagChunkCodec() - Constructor for class com.aliasi.chunk.IoTagChunkCodec

Construct an IO-encoding based tag-chunk coder with a null tokenizer factory that does not enforce cons.

IoTagChunkCodec(TokenizerFactory, boolean) - Constructor for class com.aliasi.chunk.IoTagChunkCodec

Construct an IO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and taggings if the specified flag is set.

IoTagChunkCodecTest - Class in com.aliasi.test.unit.chunk

IoTagChunkCodecTest() - Constructor for class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

isDebugEnabled() - Method in class com.aliasi.io.Reporter

Returns true if this reporter is enabled at the debug level.

isDecodable(StringTagging) - Method in interface com.aliasi.chunk.TagChunkCodec

Returns true if the specified tagging may be decoded as a chunking then encoded back to the original tagging accurately.

isEmpty() - Method in class com.aliasi.util.BinaryMap

Returns true if this mapping is empty.

isEmpty() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns true if this bounded priority queue has no elements.

isEmpty() - Method in class com.aliasi.util.ShortPriorityQueue

Returns true if the queue is empty.

isEnabled(LogLevel) - Method in class com.aliasi.io.Reporter

Returns true if the specified level is at least as severe as the level specified by this reporter.

isEncodable(Chunking) - Method in interface com.aliasi.chunk.TagChunkCodec

Returns true if the specified chunking may be encoded as a tagging then decoded back to the original chunking accurately.

isErrorEnabled() - Method in class com.aliasi.io.Reporter

Returns true if this reporter is enabled at the error level.

isFatalEnabled() - Method in class com.aliasi.io.Reporter

Returns true if this reporter is enabled at the fatal level.

isHonorific(String) - Method in class com.aliasi.coref.AbstractMentionFactory

Returns true if the specified token is an honorific.

isHonorific(String) - Method in class com.aliasi.coref.EnglishMentionFactory

isInfoEnabled() - Method in class com.aliasi.io.Reporter

Returns true if this reporter is enabled at the info level.

isKnownToken(String) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns true if the token has been seen in training data.

isLegalUtf16(CharSequence) - Static method in class com.aliasi.util.Strings

Returns true if the specified character sequence is a valid sequence of UTF-16 char values.

ISMAP - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the ismap attribute.

isNonNegative(Matrix) - Static method in class com.aliasi.matrix.Matrices

Returns true if the matrix contains only positive numbers or zeros.

isPrime(int) - Static method in class com.aliasi.util.Math

Returns true if the specified number is prime.

isPronominal(String) - Method in class com.aliasi.coref.AbstractMentionFactory

Returns true if the specified entity type is a pronominal type.

isPronominal() - Method in class com.aliasi.coref.CachedMention

Returns true if this mention is a pronoun.

isPronominal(String) - Method in class com.aliasi.coref.EnglishMentionFactory

Returns true if the specified entity type is a pronominal type.

isPronominal() - Method in interface com.aliasi.coref.Mention

Returns true if this mention is a pronoun.

isPunctuation(char) - Static method in class com.aliasi.util.Strings

Returns true if specified character is a punctuation character.

isSymmetric(Matrix) - Static method in class com.aliasi.matrix.Matrices

Returns true if the specified matrix is symmetric.

isTraceEnabled() - Method in class com.aliasi.io.Reporter

Returns true if this reporter is enabled at the trace level.

isUniform() - Method in class com.aliasi.stats.RegressionPrior

Returns true if this prior is the uniform distribution.

isWarnEnabled() - Method in class com.aliasi.io.Reporter

Returns true if this reporter is enabled at the warn level.

isWhitespace(char) - Static method in class com.aliasi.util.Strings

Returns true if specified character is a whitespace character.

itemView() - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Returns a cross-validating corpus whose items are an immutable view of the items in this corpus, but whose number of folds or fold may be changed.

iterator() - Method in class com.aliasi.chunk.ChunkingImpl

Returns an unmodifiable iterator over the chunk set underlying this chunking implementation.

iterator() - Method in class com.aliasi.dict.MapDictionary

Return an iterator over the dictionary entries in this dictionary.

iterator() - Method in class com.aliasi.dict.TrieDictionary

Returns an iterator over all of the dictionary entries for this dictioniary.

iterator() - Method in class com.aliasi.io.FileLineReader

Returns an iterator over the remaining lines of the file.

iterator() - Method in class com.aliasi.tokenizer.Tokenizer

Returns an iterator over the tokens remaining in this tokenizer.

iterator() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns an iterator over the elements in this bounded priority queue.

iterator() - Method in class com.aliasi.util.CompactHashSet

Returns an iterator over the elements in this set.

iterator() - Method in class com.aliasi.util.MinMaxHeap

Returns an iterator over this heap.

iterator() - Method in class com.aliasi.util.ShortPriorityQueue

Returns an iterator over the elements in this queue.

Iterators - Class in com.aliasi.util

Static utility methods, classes, and abstract classes for iteration.

Iterators.Buffered<E> - Class in com.aliasi.util

An Iterators.Buffered uses a single method to return objects, buffering the result and returning it as the next element if it is non-null.

Iterators.Buffered() - Constructor for class com.aliasi.util.Iterators.Buffered

Construct a buffered iterator.

Iterators.Filter<E> - Class in com.aliasi.util

An Iterators.Filter filters the stream of objects returned by another iterator by subjecting them to an acceptance test.

Iterators.Filter(Iterator<? extends E>) - Constructor for class com.aliasi.util.Iterators.Filter

Construct a filtered iterator from the specified iterator.

Iterators.Modifier<E> - Class in com.aliasi.util

An Iterator.Modifier uses a single abstract method to operate on the elements returned by an underlying iterator to return modified objects.

Iterators.Modifier(Iterator<? extends E>) - Constructor for class com.aliasi.util.Iterators.Modifier

Construct a modifier from an underlying iterator.

Iterators.PrimitiveInt - Class in com.aliasi.util

A Iterators.PrimitiveInt is an integer iterator that also allows objects to be accessed as primitive int values.

Iterators.PrimitiveInt() - Constructor for class com.aliasi.util.Iterators.PrimitiveInt

IteratorsTest - Class in com.aliasi.test.unit.util

IteratorsTest() - Constructor for class com.aliasi.test.unit.util.IteratorsTest

IteratorsTest.ListBufferedIterator - Class in com.aliasi.test.unit.util

IteratorsTest.ListBufferedIterator(Iterator) - Constructor for class com.aliasi.test.unit.util.IteratorsTest.ListBufferedIterator

J

jaccardCoefficient() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the Jaccard coefficient.

JaccardDistance - Class in com.aliasi.spell

The JaccardDistance class implements a notion of distance based on token overlap.

JaccardDistance(TokenizerFactory) - Constructor for class com.aliasi.spell.JaccardDistance

Construct an instance of Jaccard string distance using the specified tokenizer factory.

JARO_DISTANCE - Static variable in class com.aliasi.spell.JaroWinklerDistance

A constant for the Jaro distance.

JARO_WINKLER_DISTANCE - Static variable in class com.aliasi.spell.JaroWinklerDistance

A constant for the Jaro-Winkler distance with defaults set as in Winkler's papers.

JaroWinklerDistance - Class in com.aliasi.spell

The JaroWinklerDistance class implements the original Jaro string comparison as well as Winkler's modifications.

JaroWinklerDistance() - Constructor for class com.aliasi.spell.JaroWinklerDistance

Construct a basic Jaro string distance without the Winkler modifications.

JaroWinklerDistance(double, int) - Constructor for class com.aliasi.spell.JaroWinklerDistance

Construct a Winkler-modified Jaro string distance with the specified weight threshold for refinement and an initial number of characters over which to reweight.

JaroWinklerDistanceTest - Class in com.aliasi.test.unit.spell

JaroWinklerDistanceTest() - Constructor for class com.aliasi.test.unit.spell.JaroWinklerDistanceTest

JointClassification - Class in com.aliasi.classify

A JointClassification is a conditional classification derived from a joint probability assignment to each category and the object being classified.

JointClassification(String[], double[]) - Constructor for class com.aliasi.classify.JointClassification

Construct a joint classification with the specified parallel arrays of categories and log (base 2) joint probabilities of category and input object.

JointClassification(String[], double[], double[]) - Constructor for class com.aliasi.classify.JointClassification

Construct a joint classification with the specified parallel arrays of categories and log (base 2) joint probabilities of category and input object.

JointClassificationTest - Class in com.aliasi.test.unit.classify

JointClassificationTest() - Constructor for class com.aliasi.test.unit.classify.JointClassificationTest

JointClassifier<E> - Interface in com.aliasi.classify

The JointClassifier interface specifies a single method for n-best classification with joint input and category probabilities.

JointClassifierEvaluator<E> - Class in com.aliasi.classify

A JointClassifierEvaluator provides an evaluation harness for joint probability-based n-best classifiers.

JointClassifierEvaluator(JointClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.JointClassifierEvaluator

Construct a scored classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.

jointEntropy() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the entropy of the joint reference and response distribution as defined by the underlying matrix.

jointLog2Probability(int) - Method in class com.aliasi.classify.JointClassification

Returns the log (base 2) probability of the category at the specified rank.

jsDivergence(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Return the Jenson-Shannon divergence between the specified multinomial distributions.

K

k() - Method in class com.aliasi.classify.KnnClassifier

Returns the number K of neighbors used by this K-nearest neighbors classifier.

kappa() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the value of the kappa statistic with chance agreement determined by the reference distribution.

kappa() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the value of the kappa statistic.

kappa(double, double) - Static method in class com.aliasi.stats.Statistics

Returns the value of the kappa statistic for the specified observed and expected probabilities.

kappaNoPrevalence() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the value of the kappa statistic adjusted for prevalence.

kappaNoPrevalence() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the value of the kappa statistic adjusted for prevalence.

kappaUnbiased() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the value of the kappa statistic adjusted for bias.

kappaUnbiased() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the value of the unbiased kappa statistic.

KBD - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element kbd.

kbd() - Method in class com.aliasi.xml.XHtmlWriter

Start an kbd element with no attributes.

kbd(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an kbd element with the specified attributes.

kbd(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an kbd element with the specified attribute and value.

kbd(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an kbd element with the specified attributes and values.

kbd(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an kbd element with the specified attributes and values.

kbd(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an kbd element with the specified attributes and values.

kernelFunction() - Method in class com.aliasi.classify.PerceptronClassifier

Returns the kernel function for this perceptron.

KernelFunction - Interface in com.aliasi.matrix

A KernelFunction computes real-valued proximities between vectors.

keySet() - Method in class com.aliasi.util.BinaryMap

Returns the set of keys mapping to 1.

keysOrderedByCount() - Method in class com.aliasi.util.ObjectToCounterMap

Returns the array of keys for this object to counter map sorted in decreasing order of their value counts.

keysOrderedByCountList() - Method in class com.aliasi.util.ObjectToCounterMap

Returns a list of keys for this object to counter map sorted in descending order of count.

keysOrderedByValueList() - Method in class com.aliasi.util.ObjectToDoubleMap

Returns the list of keys ordered in decreasing order of value.

kill(Mention, MentionChain) - Method in interface com.aliasi.coref.Killer

Return true if the match between mention and mention chain should be excluded.

kill(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.GenderKiller

Returns true if the specified mention and mention chain have incompatible genders.

kill(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.HonorificConflictKiller

Returns true if the specified mention and mention chain have incompatible honorifics.

killed(Mention) - Method in class com.aliasi.coref.AbstractMentionChain

Returns true if there is a killing function that defeats the match of the mention against the mention chain.

killed(Mention) - Method in interface com.aliasi.coref.MentionChain

Returns true if there is a killing function that defeats the match of the mention against the mention chain.

Killer - Interface in com.aliasi.coref

An implementation of the killing interface provides a way of defeating a match between a mention and a mention chain.

killers() - Method in class com.aliasi.coref.AbstractMentionChain

The killing functions defined for this mention chain.

killers() - Method in class com.aliasi.coref.MentionChainImpl

The killing functions defined for this mention chain.

klDivergence() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the Kullback-Liebler (KL) divergence between the reference and response distributions.

klDivergence(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns the Kullback-Leibler divergence of the second specified multinomial relative to the first.

klDivergenceDirichlet(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns the Kullback-Leibler divergence of the second specified Dirichlet distribution relative to the first.

KMeansClusterer<E> - Class in com.aliasi.cluster

A KMeansClusterer provides an implementation of k-means(++) clustering based on vectors constructed by feature extractors.

KMeansClusterer(FeatureExtractor<E>, int, int, boolean, double) - Constructor for class com.aliasi.cluster.KMeansClusterer

Construct a k-means clusterer with the specified feature extractor, number of clusters, minimum improvement per cluster, using either traditional or k-means++ initialization.

KMeansClustererTest - Class in com.aliasi.test.unit.cluster

KMeansClustererTest() - Constructor for class com.aliasi.test.unit.cluster.KMeansClustererTest

KnnClassifier<E> - Class in com.aliasi.classify

A KnnClassifier implements k-nearest-neighor classification based on feature extraction and a vector proximity or distance.

KnnClassifier(FeatureExtractor<? super E>, int) - Constructor for class com.aliasi.classify.KnnClassifier

Construct a k-nearest-neighbor classifier based on the specified feature extractor and using the specified number of neighbors.

KnnClassifier(FeatureExtractor<? super E>, int, Distance<Vector>) - Constructor for class com.aliasi.classify.KnnClassifier

Construct a k-nearest-neighbor classifier based on the specified feature extractor, specified maximum number of neighbors, and specified distance function.

KnnClassifier(FeatureExtractor<? super E>, int, Proximity<Vector>, boolean) - Constructor for class com.aliasi.classify.KnnClassifier

Construct a k-nearest-neighbor classifier based on the specified feature extractor, specified maximum number of neighbors, specified proximity function, and boolean flag indicating whether or not to weight nearest neighbors by proximity during classification.

KnnClassifierTest - Class in com.aliasi.test.unit.classify

KnnClassifierTest() - Constructor for class com.aliasi.test.unit.classify.KnnClassifierTest

KnownFeatureExtractor<E> - Class in com.aliasi.features

A KnownFeatureExtractor restricts a base feature extractor to features contained in a set provided at construction time.

KnownFeatureExtractor(FeatureExtractor<? super E>, Set<String>) - Constructor for class com.aliasi.features.KnownFeatureExtractor

Construct a known feature extractor based on the specified feature set and base extractor.

KnownFeatureExtractorTest - Class in com.aliasi.test.unit.features

KnownFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.KnownFeatureExtractorTest

knownFeatures() - Method in class com.aliasi.features.ZScoreFeatureExtractor

Returns an unmodifiable view of the known features for this z-score feature extractor.

knownFeatureSet() - Method in class com.aliasi.features.KnownFeatureExtractor

Returns and unmodifiable view of the known feature set for this known feature extractor.

knownTokenEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the cost penalty for editing a character in a known token.

knownTokenSet() - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns an unmodifiable view of the set of tokens.

knownTokenTest() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

L

label(long) - Method in class com.aliasi.stats.BernoulliDistribution

Returns the failure label for outcome zero, and the success label for outcome one.

label(long) - Method in class com.aliasi.stats.MultivariateConstant

label(long) - Method in class com.aliasi.stats.MultivariateDistribution

Return the label for the specified outcome.

label(long) - Method in class com.aliasi.stats.MultivariateEstimator

Return the label for the specified outcome.

LABEL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element label.

label() - Method in class com.aliasi.xml.XHtmlWriter

Start an label element with no attributes.

label(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an label element with the specified attributes.

label(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an label element with the specified attribute and value.

label(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an label element with the specified attributes and values.

label(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an label element with the specified attributes and values.

label(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an label element with the specified attributes and values.

LABEL_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the label attribute.

lambdaA() - Method in class com.aliasi.classify.ConfusionMatrix

Returns Goodman and Kruskal's λ_A index of predictive association.

lambdaB() - Method in class com.aliasi.classify.ConfusionMatrix

Returns Goodman and Kruskal's λ_B index of predictive association.

lambdaFactor() - Method in class com.aliasi.lm.TokenizedLM

Returns the interpolation ratio, or lambda factor, for interpolating in this tokenized language model.

LANG - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the lang attribute.

languageModel(String) - Method in class com.aliasi.classify.LMClassifier

Returns the language model for the specified category.

LanguageModel - Interface in com.aliasi.lm

A LanguageModel provides an estimate of the probability of a sequence of characters.

languageModel() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the compiled language model for this spell checker.

languageModel() - Method in class com.aliasi.spell.TrainSpellChecker

Returns the n-gram process language model (source model) underlying this spell checker trainer.

LanguageModel.Conditional - Interface in com.aliasi.lm

A LanguageModel.Conditional is a language model that implements conditional estimates of characters given previous characters.

LanguageModel.Dynamic - Interface in com.aliasi.lm

A LanguageModel.Dynamic accepts training events in the form of character slices or sequences.

LanguageModel.Process - Interface in com.aliasi.lm

A LanguageModel.Process is normalized by length.

LanguageModel.Sequence - Interface in com.aliasi.lm

A LanguageModel.Sequence is normalized over all character sequences.

LanguageModel.Tokenized - Interface in com.aliasi.lm

A LanguageModel.Tokenized provides a means of estimating the probability of a sequence of tokens.

laplace(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior

Returns the Laplace prior with the specified prior variance and number of dimensions and indication of whether the intecept dimension is given a noninformative prior.

laplace(double[]) - Static method in class com.aliasi.stats.RegressionPrior

Returns the Laplace prior with the specified prior variances for the dimensions.

largestWithoutGoingOver(int[], int) - Static method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Given an increasing array of values and a specified value, return the largest index into the array such that the array's value at the index is smaller than or equal to the specified value.

last() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the lowest scoring object in the priority queue, or null if the queue is empty.

last() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the smallest element in the queue.

lastCaseToString(int) - Method in class com.aliasi.sentences.SentenceEvaluation

Returns a formatted listing for the last case that was evaluated, showing the underlying character sequence for the chunkings, annotated with the sentence boundaries from the reference and response chunking, with linebreaks inserted every lineLength characters.

lastCaseToString(int) - Method in class com.aliasi.tag.MarginalTaggerEvaluator

lastCaseToString(int) - Method in class com.aliasi.tag.NBestTaggerEvaluator

Return a string-based representation of the last case evaluated.

lastCaseToString(Set<E>) - Method in class com.aliasi.tag.TaggerEvaluator

Return a string-based representation of the last case to be evaluated based on the specified known token set.

lastConfidenceCaseReport() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns a string-based representation of the last evaluation case's confidence evaluation.

lastFirstBestCaseReport() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns a string-based representation of the last evaluation case and the first-best result.

lastNBestCaseReport() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns a string-based representation of the last n-best evaluation case.

lastTokenEndPosition() - Method in class com.aliasi.tokenizer.Tokenizer

Returns the offset of one position past the last character of the most recently returned token (optional operation).

lastTokenStartPosition() - Method in class com.aliasi.tokenizer.Tokenizer

Returns the offset of the first character of the most recently returned token (optional operation).

LatentDirichletAllocation - Class in com.aliasi.cluster

A LatentDirichletAllocation object represents a latent Dirichlet allocation (LDA) model.

LatentDirichletAllocation(double, double[][]) - Constructor for class com.aliasi.cluster.LatentDirichletAllocation

Construct a latent Dirichelt allocation (LDA) model using the specified document-topic prior and topic-word distributions.

LatentDirichletAllocation.GibbsSample - Class in com.aliasi.cluster

The LatentDirichletAllocation.GibbsSample class encapsulates all of the information related to a single Gibbs sample for latent Dirichlet allocation (LDA).

LatentDirichletAllocationTest - Class in com.aliasi.test.unit.cluster

LatentDirichletAllocationTest() - Constructor for class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

Latin1 - Static variable in class com.aliasi.util.Strings

String representing the Latin1 encoding for characters.

lda() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns a latent Dirichlet allocation model corresponding to this sample.

LeafDendrogram<E> - Class in com.aliasi.cluster

A LeafDendrogram represents a dendrogram consisting of a single object with link cost of 0.0.

LeafDendrogram(E) - Constructor for class com.aliasi.cluster.LeafDendrogram

Construct a leaf dendrogram containing the specified object.

learningRate(int) - Method in class com.aliasi.stats.AnnealingSchedule

Return the learning rate for the specified epoch.

leastSignificantBits(long, int) - Static method in class com.aliasi.io.BitOutput

Returns the specified number of the least significant bits of the specified long value as a long.

leftSingularVectors() - Method in class com.aliasi.matrix.SvdMatrix

Returns a matrix in which the left singular vectors make up the columns.

legalTags(String...) - Method in class com.aliasi.chunk.BioTagChunkCodec

legalTags(String...) - Method in class com.aliasi.chunk.IoTagChunkCodec

legalTags(String...) - Method in interface com.aliasi.chunk.TagChunkCodec

Returns true if the specified sequence of tags is a complete legal tag sequence.

legalTagSubSequence(String...) - Method in class com.aliasi.chunk.BioTagChunkCodec

legalTagSubSequence(String...) - Method in class com.aliasi.chunk.IoTagChunkCodec

legalTagSubSequence(String...) - Method in interface com.aliasi.chunk.TagChunkCodec

Returns true if the specified sequence of tags is a legal subsequence of tags.

LEGEND - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element legend.

legend() - Method in class com.aliasi.xml.XHtmlWriter

Start an legend element with no attributes.

legend(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an legend element with the specified attributes.

legend(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an legend element with the specified attribute and value.

legend(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an legend element with the specified attributes and values.

legend(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an legend element with the specified attributes and values.

legend(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an legend element with the specified attributes and values.

length() - Method in class com.aliasi.matrix.AbstractVector

Returns the length of this vector.

length() - Method in class com.aliasi.matrix.SparseFloatVector

length() - Method in interface com.aliasi.matrix.Vector

Returns the length of this vector.

lengthNorm() - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns the length normalization factor for this classifier.

LengthNormFeatureExtractor<E> - Class in com.aliasi.features

A LengthNormFeatureExtractor converts feature vectors produced by a contained extractor into unit length vectors.

LengthNormFeatureExtractor(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.LengthNormFeatureExtractor

Construct a length-normalized feature extractor from the specified extractor.

LengthNormFeatureExtractorTest - Class in com.aliasi.test.unit.features

LengthNormFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.LengthNormFeatureExtractorTest

LETTER_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer

The letter category.

LI - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element li.

li() - Method in class com.aliasi.xml.XHtmlWriter

Start an li element with no attributes.

li(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an li element with the specified attributes.

li(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an li element with the specified attribute and value.

li(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an li element with the specified attributes and values.

li(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an li element with the specified attributes and values.

li(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an li element with the specified attributes and values.

linearRegression(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns a two-element array of lineary regression coefficients for the specified x and y values.

LineTaggingParser - Class in com.aliasi.tag

Provides a means of generating a parser for taggings based on a extracting zone boundaries and token/tag pairs from lines of data using regular expressions.

LineTaggingParser(String, int, int, String, String) - Constructor for class com.aliasi.tag.LineTaggingParser

Construct a regular expression tagging parser from the specified regular expressions and indexes.

LineTaggingParserTest - Class in com.aliasi.test.unit.tag

LineTaggingParserTest() - Constructor for class com.aliasi.test.unit.tag.LineTaggingParserTest

LineTokenizerFactory - Class in com.aliasi.tokenizer

A LineTokenizerFactory treats each line of an input as a token.

LineTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

LineTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.LineTokenizerFactoryTest

LINK - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element link.

link() - Method in class com.aliasi.xml.XHtmlWriter

Start an link element with no attributes.

link(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an link element with the specified attributes.

link(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an link element with the specified attribute and value.

link(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an link element with the specified attributes and values.

link(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an link element with the specified attributes and values.

link(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an link element with the specified attributes and values.

LinkDendrogram<E> - Class in com.aliasi.cluster

A LinkDendrogram consists of a pair of sub-dendrograms which are joined at a specified cost.

LinkDendrogram(Dendrogram<E>, Dendrogram<E>, double) - Constructor for class com.aliasi.cluster.LinkDendrogram

Construct a link dendrogram containing the specified object.

list(E...) - Static method in class com.aliasi.util.Iterators

Returns an iterator constructed from the specified variable length argument list of objects.

ListCorpus<E> - Class in com.aliasi.corpus

A ListCorpus implements a corpus based on a list of training and test cases.

ListCorpus() - Constructor for class com.aliasi.corpus.ListCorpus

Construct a list-based corpus with no entries.

ListCorpusTest - Class in com.aliasi.test.unit.corpus

ListCorpusTest() - Constructor for class com.aliasi.test.unit.corpus.ListCorpusTest

LMClassifier<L extends LanguageModel,M extends MultivariateDistribution> - Class in com.aliasi.classify

An LMClassifier performs joint probability-based classification of character sequences into non-overlapping categories based on language models for each category and a multivariate distribution over categories.

LMClassifier(String[], L[], M) - Constructor for class com.aliasi.classify.LMClassifier

Construct a joint classifier for character sequences classifying over a specified set of categories, with a multivariate distribution over those categories and a language model per category.

LN_2 - Static variable in class com.aliasi.util.Math

The natural logarithm of 2.

locale() - Method in class com.aliasi.tokenizer.LowerCaseTokenizerFactory

Return the locale for this factory.

log2(double) - Static method in class com.aliasi.util.Math

Returns the log base 2 of the specivied value.

LOG2_E - Static variable in class com.aliasi.util.Math

The log base 2 of the constant e, which is the base of the natural logarithm.

log2BinomialCoefficient(long, long) - Static method in class com.aliasi.stats.BinomialDistribution

Returns the log (base 2) of the binomial coefficient of the specified arguments.

log2BinomialCoefficient(long, long) - Static method in class com.aliasi.util.Math

Returns the log (base 2) of the binomial coefficient of the specified arguments.

log2CaseProb(CharSequence) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns the log (base 2) marginal probability of the specified input.

log2CaseProbTest() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM

log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramProcessLM

log2ConditionalEstimate(char[], int, int) - Method in interface com.aliasi.lm.LanguageModel.Conditional

Returns the log (base 2) of the probability estimate for the conditional probability of the last character in the specified slice given the previous characters.

log2ConditionalEstimate(CharSequence) - Method in interface com.aliasi.lm.LanguageModel.Conditional

Returns the log (base 2) of the probabilty estimate for the conditional probability of the last character in the specified character sequence given the previous characters.

log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM

log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.NGramBoundaryLM

log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM

log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.NGramProcessLM

log2ConditionalEstimate(CharSequence, int, double) - Method in class com.aliasi.lm.NGramProcessLM

Returns the log (base 2) conditional estimate of the last character in the specified character sequence given the previous characters based only on counts of n-grams up to the specified maximum n-gram.

log2ConditionalEstimate(char[], int, int, int, double) - Method in class com.aliasi.lm.NGramProcessLM

Returns the log (base 2) conditional estimate for a specified character slice with a specified maximum n-gram and specified hyperparameter.

log2Estimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

log2Estimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM

log2Estimate(int, char) - Method in class com.aliasi.lm.CompiledNGramProcessLM

Returns the log (base 2) estimate of the specified character in the context with the specified index.

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramProcessLM

log2Estimate(CharSequence) - Method in class com.aliasi.lm.CompiledTokenizedLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.CompiledTokenizedLM

log2Estimate(char[], int, int) - Method in interface com.aliasi.lm.LanguageModel

Returns an estimate of the log (base 2) probability of the specified character slice.

log2Estimate(CharSequence) - Method in interface com.aliasi.lm.LanguageModel

Returns an estimate of the log (base 2) probability of the specified character sequence.

log2Estimate(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.NGramBoundaryLM

log2Estimate(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.NGramProcessLM

log2Estimate(CharSequence) - Method in class com.aliasi.lm.TokenizedLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.TokenizedLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.UniformBoundaryLM

log2Estimate(CharSequence) - Method in class com.aliasi.lm.UniformBoundaryLM

log2Estimate(char[], int, int) - Method in class com.aliasi.lm.UniformProcessLM

log2Estimate(CharSequence) - Method in class com.aliasi.lm.UniformProcessLM

log2Factorial(long) - Static method in class com.aliasi.util.Math

Returns the log (base 2) of the factorial of the specified long integer.

log2Gamma(double) - Static method in class com.aliasi.util.Math

Returns the log (base 2) of the Γ function.

log2Likelihood(Vector[], int[], LogisticRegression) - Static method in class com.aliasi.stats.LogisticRegression

Returns the log (base 2) likelihood of the specified inputs with the specified categories using the specified regression model.

log2ModelProb() - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns the log (base 2) of the probability density of this model in the Dirichlet prior specified by this classifier.

log2MultinomialCoefficient(int[]) - Static method in class com.aliasi.stats.MultinomialDistribution

Returns the log (base 2) multinomial coefficient for the specified counts.

log2Prior(double, int) - Method in class com.aliasi.stats.RegressionPrior

Returns the log (base 2) of the prior density evaluated at the specified coefficient value for the specified dimension (up to an additive constant).

log2Prior(Vector) - Method in class com.aliasi.stats.RegressionPrior

Returns the log (base 2) prior density for a specified coefficient vector (up to an additive constant).

log2Prior(Vector[]) - Method in class com.aliasi.stats.RegressionPrior

Returns the log (base 2) prior density for the specified array of coefficient vectors (up to an additive constant).

log2Prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

This method is a convenience impelementation of the Model interface which delegates the call to CompiledNGramBoundaryLM.log2Estimate(CharSequence).

log2Prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM

This method is a convenience impelementation of the Model interface which delegates the call to CompiledNGramProcessLM.log2Estimate(CharSequence).

log2Prob(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM

This method is a convenience impelementation of the Model interface which delegates the call to NGramBoundaryLM.log2Estimate(CharSequence).

log2Prob(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM

log2Prob(E) - Method in interface com.aliasi.stats.Model

Returns the log (base 2) of the probability of the specified object.

log2Probability(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the log (base 2) probability of the specified outcome.

log2Probability(long) - Method in class com.aliasi.stats.BinomialDistribution

Returns the log (base 2) probability of the specified outcome.

log2Probability(long) - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the log (base 2) probability of the specified outcome.

log2Probability(int[]) - Method in class com.aliasi.stats.MultinomialDistribution

Returns the log (base 2) probability of the distribution of outcomes specified in the argument.

log2Probability(String) - Method in class com.aliasi.stats.MultivariateDistribution

Returns the log (base 2) probability of the outcome specified by label.

log2Probability(long) - Method in class com.aliasi.stats.PoissonDistribution

Returns the log (base 2) probability estimate in this Poisson distribution for the specified outcome.

logBackward(int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

logBackward(int, int) - Method in class com.aliasi.tag.TagLattice

Returns the log of the backward probability to the specified token and tag.

logBase2ToNaturalLog(double) - Static method in class com.aliasi.util.Math

Converts a log base 2 logarithm to a natural logarithm.

logForward(int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

logForward(int, int) - Method in class com.aliasi.tag.TagLattice

Return the log of the forward probability of the specified tag at the specified position.

logInterpolated(double, RegressionPrior, RegressionPrior) - Static method in class com.aliasi.stats.RegressionPrior

Returns the prior that interpolates its log probability between the specified priors with the weight going to the first prior.

LogisticRegression - Class in com.aliasi.stats

A LogisticRegression instance is a multi-class vector classifier model generating conditional probability estimates of categories.

LogisticRegression(Vector[]) - Constructor for class com.aliasi.stats.LogisticRegression

Construct a multinomial logistic regression model with the specified weight vectors.

LogisticRegression(Vector) - Constructor for class com.aliasi.stats.LogisticRegression

Construct a binomial logistic regression model with the specified parameter vector.

logisticRegression(double[], double[], double) - Static method in class com.aliasi.stats.Statistics

Returns a two-element array of logistic regression coefficients for the specified x and y values.

LogisticRegressionClassifier<E> - Class in com.aliasi.classify

A LogisticRegressionClassifier provides conditional probability classifications of input objects using an underlying logistic regression model and feature extractor.

LogisticRegressionClassifierTest - Class in com.aliasi.test.unit.classify

LogisticRegressionClassifierTest() - Constructor for class com.aliasi.test.unit.classify.LogisticRegressionClassifierTest

LogisticRegressionTest - Class in com.aliasi.test.unit.stats

LogisticRegressionTest() - Constructor for class com.aliasi.test.unit.stats.LogisticRegressionTest

LogLevel - Enum in com.aliasi.io

A LogLevel is used to indicate a severity level for selecting which logging messages to report.

LogLevelTest - Class in com.aliasi.test.unit.io

LogLevelTest() - Constructor for class com.aliasi.test.unit.io.LogLevelTest

logProbability(int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

Return the log of the conditional probability that the specified token has the specified tag, given the complete list of input tokens.

logProbability(int, int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

logProbability(int, int[]) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

Return the log conditional probability that the tokens starting with the specified token position have the specified tags given the complete sequence of input tokens.

logProbability(int, int) - Method in class com.aliasi.tag.TagLattice

Convenience method returning the log of the conditional probability that the specified token has the specified tag, given the complete list of input tokens.

logProbability(int, int, int) - Method in class com.aliasi.tag.TagLattice

Convenience method returning the log of the conditional probability that the specified two tokens have the specified tag given the complete list of input tokens.

logProbability(int, int[]) - Method in class com.aliasi.tag.TagLattice

Return the log conditional probability that the tokens starting with the specified token position have the specified tags given the complete sequence of input tokens.

logSumOfExponentials(double[]) - Static method in class com.aliasi.util.Math

This method returns the log of the sum of the natural exponentiated values in the specified array.

logTransition(int, int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

logTransition(int, int, int) - Method in class com.aliasi.tag.TagLattice

Returns the log of the transition probability from the specified input token position with the specified previous tag to the specified target tag.

logZ() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

Return the log of the normalizing constant for the lattice.

logZ() - Method in class com.aliasi.tag.TagLattice

Return the log of the normalizing constant for the lattice.

LONGDESC - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the longdesc attribute.

LONGEST_MATCH_ORDER_COMPARATOR - Static variable in interface com.aliasi.chunk.Chunk

Compares two chunks based on their text position.

longestContextIndex(String) - Method in class com.aliasi.lm.CompiledNGramProcessLM

Return the index in the parallel array structure underlying of the maximum length suffix of the specified string that is defined as a context.

longValue() - Method in class com.aliasi.util.Counter

Returns the value of this counter as a long.

LowerCaseTokenizerFactory - Class in com.aliasi.tokenizer

A LowerCaseTokenizerFactory filters the tokenizers produced by a base tokenizer factory to produce lower case output.

LowerCaseTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.LowerCaseTokenizerFactory

Construct a lowercasing tokenizer factory from the specified base factory using the locale Locale.English

LowerCaseTokenizerFactory(TokenizerFactory, Locale) - Constructor for class com.aliasi.tokenizer.LowerCaseTokenizerFactory

Construct a lowercasing tokenizer factory from the specified base factory using the specified locale.

LowerCaseTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

LowerCaseTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.LowerCaseTokenizerFactoryTest

M

macroAvgFMeasure() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the average F measure per category.

macroAvgPrecision() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the average precision per category.

macroAvgRecall() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the average precision per category.

main(String[]) - Static method in class com.aliasi.test.unit.cluster.KMeansClustererTest

main(String[]) - Static method in class com.aliasi.test.unit.util.HammerFastCache

MALE_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory

The gender for males.

MALE_HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory

The set of male honorifics.

MAP - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element map.

map() - Method in class com.aliasi.xml.XHtmlWriter

Start an map element with no attributes.

map(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an map element with the specified attributes.

map(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an map element with the specified attribute and value.

map(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an map element with the specified attributes and values.

map(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an map element with the specified attributes and values.

map(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an map element with the specified attributes and values.

MapDictionary<C> - Class in com.aliasi.dict

A MapDictionary uses an underlying map from phrases to their set of dictionary entries.

MapDictionary() - Constructor for class com.aliasi.dict.MapDictionary

Construct an empty map-based dictionary.

MapDictionaryTest - Class in com.aliasi.test.unit.dict

MapDictionaryTest() - Constructor for class com.aliasi.test.unit.dict.MapDictionaryTest

MapSymbolTable - Class in com.aliasi.symbol

A MapSymbolTable is a dynamic symbol table based on a pair of underlying maps.

MapSymbolTable() - Constructor for class com.aliasi.symbol.MapSymbolTable

Construct an empty map symbol table.

MapSymbolTable(int) - Constructor for class com.aliasi.symbol.MapSymbolTable

Construct an empty map symbol table that begins allocating identifiers at the specified value.

MapSymbolTable(Map<String, Integer>) - Constructor for class com.aliasi.symbol.MapSymbolTable

Construct a map symbol which associates symbols to identifiers based on the specified map.

MapSymbolTableTest - Class in com.aliasi.test.unit.symbol

MapSymbolTableTest() - Constructor for class com.aliasi.test.unit.symbol.MapSymbolTableTest

MarginalTagger<E> - Interface in com.aliasi.tag

The MarginalTagger<E> interface is for objects that tag a list of tokens with marginal per-tag and transition probabilities.

MarginalTaggerEvaluator<E> - Class in com.aliasi.tag

A MarginalTaggerEvaluator evaluates marginal taggers either directly or by adding their outputs.

MarginalTaggerEvaluator(MarginalTagger<E>, Set<String>, boolean) - Constructor for class com.aliasi.tag.MarginalTaggerEvaluator

Construct an evaluator for the specified marginal tagger, using the specifed tag set and flag indicating whether or not to store input tokens.

match(Mention, MentionChain) - Method in class com.aliasi.coref.BooleanMatcherAdapter

Final implementation of the matching function required by Matcher.

match(Mention, MentionChain) - Method in interface com.aliasi.coref.Matcher

Returns the match score between a specified mention and mention chain.

matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.BooleanMatcherAdapter

Returns true if the specified mention matches the specified mention chain.

matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.EntityTypeMatch

Returns true if the mention has the type that was specified in the constructor.

matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.ExactPhraseMatch

Returns true if the normal phrase of the mention is equal to the normal phrase of a mention in the mention chain.

matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch

Returns true if the normal tokens in the mention are within a threshold edit distance of the normal tokens in one of the mentions in the chain.

matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.SynonymMatch

Returns true if the mention's normal phrase has a synonym that is the normal phrase of one of the chain's mentions.

Matcher - Interface in com.aliasi.coref

An implementation of the matching interface provides a score for matching a mention against a mention chain.

matchers() - Method in class com.aliasi.coref.AbstractMentionChain

The matching functions defined for this mention chain.

matchers() - Method in class com.aliasi.coref.MentionChainImpl

The matching functions defined for this mention chain.

matchScore(Mention) - Method in class com.aliasi.coref.AbstractMentionChain

Returns the best match score of the mention versus the mention chain according to the matching functions determined by the antecedent.

matchScore(Mention) - Method in interface com.aliasi.coref.MentionChain

Returns the best match score of the mention versus the mention chain according to the matching functions determined by the antecedent.

matchWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance

Returns the constant weight of matching the specified character.

matchWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weight of matching the specified character.

Math - Class in com.aliasi.util

A math utility class with static methods.

MathTest - Class in com.aliasi.test.unit.util

MathTest() - Constructor for class com.aliasi.test.unit.util.MathTest

Matrices - Class in com.aliasi.matrix

The Matrices class contains static utility methods for various matrix properties and operations.

MatricesTest - Class in com.aliasi.test.unit.matrix

MatricesTest() - Constructor for class com.aliasi.test.unit.matrix.MatricesTest

matrix() - Method in class com.aliasi.classify.ConfusionMatrix

Return a copy of the matrix values.

Matrix - Interface in com.aliasi.matrix

A Matrix represents a 2-dimensional matrix.

max(double...) - Static method in class com.aliasi.util.Math

Returns the maximum value of an element in xs.

max(int...) - Static method in class com.aliasi.util.Math

Returns the maximum value of an element in the specified array.

MAX_DISTANCE_SCORE - Static variable in interface com.aliasi.coref.Matcher

Maximum distance score between a mention and a mention chain.

MAX_SCORE - Static variable in interface com.aliasi.coref.Matcher

Maximum score; equal to Matcher.MAX_SEMANTIC_SCORE + Matcher.MAX_DISTANCE_SCORE.

MAX_SEMANTIC_SCORE - Static variable in interface com.aliasi.coref.Matcher

Maximum value for the matching function, currently 4.

maxEpochs() - Method in class com.aliasi.cluster.KMeansClusterer

Returns the maximum number of epochs for this clusterer.

maximum(double...) - Static method in class com.aliasi.util.Math

Returns the maximum of the specified array of double values.

maximumFMeasure() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the maximum F₁-measure for an operating point on the PR curve.

maximumFMeasure(double) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the maximum F_β-measure for an operating point on the precision-recall curve for a specified precision weight β > 0.

maxLength() - Method in class com.aliasi.lm.TrieIntSeqCounter

Returns the maximum length of subsequence of integers being counted.

MAXLENGTH - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the maxlength attribute.

maxNBest() - Method in class com.aliasi.tag.NBestTaggerEvaluator

Returns the maximum number of results examined in the response for each test case.

maxNGram() - Method in class com.aliasi.lm.CompiledNGramProcessLM

Returns the maximum length n-gram used for this compiled language model.

maxNGram() - Method in class com.aliasi.lm.NGramProcessLM

Returns the maximum n-gram length for this model.

maxNGram() - Method in class com.aliasi.tokenizer.NGramTokenizerFactory

Returns the maximum n-gram length returned by this tokenizer factory.

maxNGram() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory

Return the maximum n-gram length.

maxOutcome() - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the maximum outcome with non-zero probability for this distribution.

maxOutcome() - Method in class com.aliasi.stats.BernoulliDistribution

Returns one, the maximum outcome for a Bernoulli distribution.

maxOutcome() - Method in class com.aliasi.stats.BinomialDistribution

Returns the maximum non-zero probability outcome, which is the number of trials for this distribution.

maxOutcome() - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the maximum outcome with non-zero probability.

maxOutcome() - Method in class com.aliasi.stats.MultivariateDistribution

Returns the maximum outcome with non-zero probability for a multivariate distribution.

maxOutcome() - Method in class com.aliasi.stats.ZipfDistribution

Returns the maximum outcome, which is just the number of outcomes.

maxOutcome() - Method in class com.aliasi.test.unit.stats.AbstractDiscreteDistributionTest.Distro

maxResults() - Method in class com.aliasi.classify.BigVectorClassifier

Return the maximum number of top results returned by this classifier.

maxResultsPerPrefix() - Method in class com.aliasi.spell.AutoCompleter

Returns the maximum number of results returned by this auto completer for each input prefix.

maxSearchQueueSize() - Method in class com.aliasi.spell.AutoCompleter

Returns the maximum number of elements on the search queue.

maxSentenceOffset() - Method in class com.aliasi.coref.AbstractMentionChain

Offset of the last sentence in which a mention belonging to this mention chain appears.

maxSentenceOffset() - Method in interface com.aliasi.coref.MentionChain

Offset of the last sentence in which a mention belonging to this mention chain appears.

maxSize() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the maximum size allowed for this queue.

maxSize() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the maximum size of this queue.

maxSuffixLength() - Method in class com.aliasi.suffixarray.CharSuffixArray

Returns the maximum suffix length for this character suffix array.

maxSuffixLength() - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns the maximum suffix length for this token suffix array.

mean(String) - Method in class com.aliasi.features.ZScoreFeatureExtractor

Returns the mean for the specified feature, or Double.NaN if the feature is not known.

mean() - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the mean of this distribution.

mean() - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the mean of this distribution.

mean() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns the mean of the samples.

mean() - Method in class com.aliasi.stats.PoissonConstant

Returns the mean of this distribution, which is fixed at construction time.

mean() - Method in class com.aliasi.stats.PoissonDistribution

Returns the mean of this Poisson distribution, which is equal to the rate parameter λ.

mean() - Method in class com.aliasi.stats.PoissonEstimator

Returns the mean for this estimator.

mean(double[]) - Static method in class com.aliasi.stats.Statistics

Returns the mean of the specified array of input values.

meanReciprocalRank() - Method in class com.aliasi.classify.RankedClassifierEvaluator

Returns the average over all test samples of the reciprocal of one plus the rank of the reference category in the response.

MEDIA - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the media attribute.

MedlineSentenceModel - Class in com.aliasi.sentences

A MedlineSentenceModel is a heuristic sentence model designed for operating over biomedical research abstracts as found in MEDLINE.

MedlineSentenceModel() - Constructor for class com.aliasi.sentences.MedlineSentenceModel

Construct a MEDLINE sentence model.

MedlineSentenceModelTest - Class in com.aliasi.test.unit.sentences

MedlineSentenceModelTest() - Constructor for class com.aliasi.test.unit.sentences.MedlineSentenceModelTest

member(Object, Object[]) - Static method in class com.aliasi.util.Arrays

Returns true if the specified object is an element of the specified array.

member(char, char[]) - Static method in class com.aliasi.util.Arrays

Returns true if the specified character is a member of the specified array.

memberIterator() - Method in class com.aliasi.util.ObjectToSet

Returns an iterator over all values.

memberSet() - Method in class com.aliasi.cluster.Dendrogram

Returns the members of this dendrogram.

memberSet() - Method in class com.aliasi.cluster.LeafDendrogram

Returns the singleton member of this dendrogram.

memberSet() - Method in class com.aliasi.cluster.LinkDendrogram

memberValues() - Method in class com.aliasi.util.ObjectToSet

Returns a set constituting the union of all of the members of the set values for all of the keys.

Mention - Interface in com.aliasi.coref

An instance of Mention represents a single mention of a given phrase in context.

MentionChain - Interface in com.aliasi.coref

A MentionChain represents a set of mentions that have been resolved as coreferent in that they refer to the same underlying entity.

MentionChainImpl - Class in com.aliasi.coref

An implementation of mention chains.

MentionChainImpl(Mention, int, int) - Constructor for class com.aliasi.coref.MentionChainImpl

Construct a mention chain implementation containing the single specified mention at the specified offset, assigning the chain the specified identifier.

MentionChainImplTest - Class in com.aliasi.test.unit.coref

MentionChainImplTest() - Constructor for class com.aliasi.test.unit.coref.MentionChainImplTest

mentionChains() - Method in class com.aliasi.coref.WithinDocCoref

Returns the set of mention chains, sorted in order of identifier from first appearance to last.

MentionFactory - Interface in com.aliasi.coref

A MentionFactory is responsible for creating and merging mentions and mention chains.

mentions() - Method in class com.aliasi.coref.AbstractMentionChain

Returns the set of mentions underlying this mention chain.

mentions() - Method in interface com.aliasi.coref.MentionChain

Returns the set of mentions underlying this mention chain.

MENU - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element menu.

menu() - Method in class com.aliasi.xml.XHtmlWriter

Start an menu element with no attributes.

menu(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an menu element with the specified attributes.

menu(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an menu element with the specified attribute and value.

menu(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an menu element with the specified attributes and values.

menu(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an menu element with the specified attributes and values.

menu(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an menu element with the specified attributes and values.

merge(Chunking, Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl

Return the result of combining two chunkings into a single non-overlapping chunking.

merge(TrieCharSeqCounter, TrieCharSeqCounter) - Method in class com.aliasi.test.unit.lm.MultiTrieReaderTest

META - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element meta.

meta() - Method in class com.aliasi.xml.XHtmlWriter

Start an meta element with no attributes.

meta(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an meta element with the specified attributes.

meta(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an meta element with the specified attribute and value.

meta(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an meta element with the specified attributes and values.

meta(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an meta element with the specified attributes and values.

meta(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an meta element with the specified attributes and values.

METHOD - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the method attribute.

mHandler - Variable in class com.aliasi.xml.SAXFilterHandler

The contained default handler to which events are delegated by default.

microAverage() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the micro-averaged precision-recall evaluation.

minimum(double...) - Static method in class com.aliasi.util.Math

Returns the minimum of the specified array of double values.

minimumTokenLengthToCorrect() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the minimum length of token that will be corrected.

MinkowskiDistance - Class in com.aliasi.matrix

The MinkowskiDistance class implements Minkowski distance of a fixed order between vectors.

MinkowskiDistance(int) - Constructor for class com.aliasi.matrix.MinkowskiDistance

Construct a new Minkowski distance of the specified order.

MinkowskiDistanceTest - Class in com.aliasi.test.unit.matrix

MinkowskiDistanceTest() - Constructor for class com.aliasi.test.unit.matrix.MinkowskiDistanceTest

MinMaxHeap<E extends Scored> - Class in com.aliasi.util

A MinMaxHeap provides a heap-like data structure that provides fast access to both the minimum and maximum elements of the heap.

MinMaxHeap(int) - Constructor for class com.aliasi.util.MinMaxHeap

Construct a min-max heap holding up to the specified number of elements.

MinMaxHeapTest - Class in com.aliasi.test.unit.util

MinMaxHeapTest() - Constructor for class com.aliasi.test.unit.util.MinMaxHeapTest

minNGram() - Method in class com.aliasi.tokenizer.NGramTokenizerFactory

Returns the minimum n-gram length returned by this tokenizer factory.

minNGram() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory

Return the minimum n-gram length.

minOutcome() - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the minimum outcome with non-zero probability for this distribution.

minOutcome() - Method in class com.aliasi.stats.BinomialDistribution

Returns zero, the minimum outcome for a binomial distribution.

minOutcome() - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the minimum outcome with non-zero probability.

minOutcome() - Method in class com.aliasi.stats.MultivariateDistribution

Returns zero, the minimum outcome with non-zero probability for a multivariate distribution.

minOutcome() - Method in class com.aliasi.stats.PoissonDistribution

Returns the minimum outcome with non-zero probability, 0.

minOutcome() - Method in class com.aliasi.stats.ZipfDistribution

Returns one, the minimum outcome in a Zipf distribution.

minOutcome() - Method in class com.aliasi.test.unit.stats.AbstractDiscreteDistributionTest.Distro

minRelativeImprovement() - Method in class com.aliasi.cluster.KMeansClusterer

Returns the minimum reduction in relative error required to continue to the next epoch during clustering.

MockDefaultHandler - Class in com.aliasi.test.unit.xml

The mock handler logs all method calls to a single array of tuples, which is accessible through MockDefaultHandler.getCalls().

MockDefaultHandler() - Constructor for class com.aliasi.test.unit.xml.MockDefaultHandler

Construct a new mock handler.

MockFeatureExtractor - Class in com.aliasi.test.unit.features

MockFeatureExtractor() - Constructor for class com.aliasi.test.unit.features.MockFeatureExtractor

MockObjectHelper - Class in com.aliasi.test.unit

MockObjectHelper() - Constructor for class com.aliasi.test.unit.MockObjectHelper

mode(int) - Method in class com.aliasi.stats.RegressionPrior

Returns the mode of the prior.

model() - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns the logistic regression model underlying this classifier.

Model<E> - Interface in com.aliasi.stats

A Model represents a generic interface for classes that estimate probabilities of objects.

ModifiedFeatureExtractor<E> - Class in com.aliasi.features

A ModifiedFeatureExtractor allows feature values to be modified in a feature-specific fashion.

ModifiedFeatureExtractor(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.ModifiedFeatureExtractor

Construct a modified feature extractor with the specified base extractor.

ModifiedTokenizerFactory - Class in com.aliasi.tokenizer

A ModifiedTokenizerFactory is an abstract tokenizer factory that modifies a tokenizer returned by a base tokenizer factory.

ModifiedTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.ModifiedTokenizerFactory

Construct a modified tokenizer factory with the specified base factory.

modify(Tokenizer) - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory

Return a modified form of the specified tokenizer.

modify(Tokenizer) - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory

Return a modified version of the specified tokenizer that modifies tokens and whitespaces as specified by the corresponding string modifier methods.

modify(E) - Method in class com.aliasi.util.Iterators.Modifier

This abstract method is applied to objects returned by the underlying iterator to create the object returned by this iterator.

modifyToken(String) - Method in class com.aliasi.tokenizer.LowerCaseTokenizerFactory

Return the lowercased version of the specified token using this factory's locale.

modifyToken(String) - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory

Return a modified form of the specified token, or null to remove it.

modifyToken(String) - Method in class com.aliasi.tokenizer.PorterStemmerTokenizerFactory

Returns the Porter stemmed version of the specified token.

modifyToken(String) - Method in class com.aliasi.tokenizer.RegExFilteredTokenizerFactory

Returns the specified token if it matches this filter's pattern and null otherwise.

modifyToken(String) - Method in class com.aliasi.tokenizer.SoundexTokenizerFactory

Returns the Soundex encoding of the specified token.

modifyToken(String) - Method in class com.aliasi.tokenizer.StopTokenizerFactory

modifyToken(String) - Method in class com.aliasi.tokenizer.TokenLengthTokenizerFactory

Return a tokenizer that filters out any tokens produced by the specified tokenizer that are shorter than the shortest or longer than the longest acceptable lengths.

ModifyTokenTokenizerFactory - Class in com.aliasi.tokenizer

The abstract base class ModifyTokenTokenizerFactory adapts token and whitespace modifiers to modify tokenizer factories.

ModifyTokenTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.ModifyTokenTokenizerFactory

Construct a token-modifying tokenizer factory with the specified base factory.

modifyWhitespace(String) - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory

Return the modified form of the specified whitespace.

modifyWhitespace(String) - Method in class com.aliasi.tokenizer.WhitespaceNormTokenizerFactory

Return the normalized form of the specified whitespace.

mostSignificantPowerOfTwo(long) - Static method in class com.aliasi.io.BitOutput

Returns the index of the most significant bit filled for the specified long value.

msToString(long) - Static method in class com.aliasi.util.Strings

Takes a time in milliseconds and returns an hours, minutes and seconds representation.

mucF() - Method in class com.aliasi.cluster.ClusterScore

Returns the F₁ measure of the MUC recall and precision.

mucPrecision() - Method in class com.aliasi.cluster.ClusterScore

Returns the precision as defined by MUC.

mucRecall() - Method in class com.aliasi.cluster.ClusterScore

Returns the recall as defined by MUC.

MultinomialDistribution - Class in com.aliasi.stats

A MultinomialDistribution results from drawing a fixed number of samples from a multivariate distribution.

MultinomialDistribution(MultivariateDistribution) - Constructor for class com.aliasi.stats.MultinomialDistribution

Construct a multinomial distribution based on the specified multivariate distribution.

MultinomialDistributionTest - Class in com.aliasi.test.unit.stats

MultinomialDistributionTest() - Constructor for class com.aliasi.test.unit.stats.MultinomialDistributionTest

MULTIPLE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the multiple attribute.

MultiTrieReader - Class in com.aliasi.lm

A MultiTrieReader merges two trie readers, providing output that is the result of adding the counts from the two readers.

MultiTrieReader(TrieReader, TrieReader) - Constructor for class com.aliasi.lm.MultiTrieReader

Construct a multiple trie reader that returns counts that are the sum of the two readers' counts.

MultiTrieReaderTest - Class in com.aliasi.test.unit.lm

MultiTrieReaderTest() - Constructor for class com.aliasi.test.unit.lm.MultiTrieReaderTest

MultivariateConstant - Class in com.aliasi.stats

A MultivariateConstant provides a multinomial distribution with constant probabilities and labels.

MultivariateConstant(int) - Constructor for class com.aliasi.stats.MultivariateConstant

Construct a uniform constant multinomial distribution with the specified number of outcomes.

MultivariateConstant(long[]) - Constructor for class com.aliasi.stats.MultivariateConstant

Construct a constant multinomial distribution with probabilities proportional to the specified counts.

MultivariateConstant(double[]) - Constructor for class com.aliasi.stats.MultivariateConstant

Construct a constant multinomial distribution with probabilities proportional to the specified ratios.

MultivariateConstant(String[]) - Constructor for class com.aliasi.stats.MultivariateConstant

Construct a uniform constant multinomial distribution with the specified labels.

MultivariateConstant(long[], String[]) - Constructor for class com.aliasi.stats.MultivariateConstant

Construct a constant multinomial distribution with the specified labels and probabilities proportional to the specified counts.

MultivariateConstant(double[], String[]) - Constructor for class com.aliasi.stats.MultivariateConstant

Construct a constant multinomial distribution with the specified labels and probabilities proportional to the specified counts.

MultivariateConstantTest - Class in com.aliasi.test.unit.stats

MultivariateConstantTest() - Constructor for class com.aliasi.test.unit.stats.MultivariateConstantTest

MultivariateDistribution - Class in com.aliasi.stats

A MultivariateDistribution implements a discrete distribution over a finite set of outcomes numbered consecutively from zero.

MultivariateDistribution() - Constructor for class com.aliasi.stats.MultivariateDistribution

Construct a multivariate distribution.

MultivariateDistributionTest - Class in com.aliasi.test.unit.stats

MultivariateDistributionTest() - Constructor for class com.aliasi.test.unit.stats.MultivariateDistributionTest

MultivariateDistributionTest.Distro - Class in com.aliasi.test.unit.stats

MultivariateDistributionTest.Distro() - Constructor for class com.aliasi.test.unit.stats.MultivariateDistributionTest.Distro

MultivariateEstimator - Class in com.aliasi.stats

A MultivariateEstimator provides a maximum likelihood estimator of a multivariate distribution based on training samples.

MultivariateEstimator() - Constructor for class com.aliasi.stats.MultivariateEstimator

Construct a multivariate estimator with no known outcomes or counts.

MultivariateEstimatorTest - Class in com.aliasi.test.unit.stats

MultivariateEstimatorTest() - Constructor for class com.aliasi.test.unit.stats.MultivariateEstimatorTest

mutualInformation() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the mutual information between the reference and response distributions.

N

NaiveBayesClassifier - Class in com.aliasi.classify

A NaiveBayesClassifier provides a trainable naive Bayes text classifier, with tokens as features.

NaiveBayesClassifier(String[], TokenizerFactory) - Constructor for class com.aliasi.classify.NaiveBayesClassifier

Construct a naive Bayes classifier with the specified categories and tokenizer factory.

NaiveBayesClassifier(String[], TokenizerFactory, int) - Constructor for class com.aliasi.classify.NaiveBayesClassifier

Construct a naive Bayes classifier with the specified categories, tokenizer factory and level of character n-gram for smoothing token estimates.

NaiveBayesClassifier(String[], TokenizerFactory, int, int) - Constructor for class com.aliasi.classify.NaiveBayesClassifier

Construct a naive Bayes classifier with the specified categories, tokenizer factory and level of character n-gram for smoothing token estimates, along with a specification of the total number of characters in test and training instances.

NaiveBayesClassifierTest - Class in com.aliasi.test.unit.classify

NaiveBayesClassifierTest() - Constructor for class com.aliasi.test.unit.classify.NaiveBayesClassifierTest

NAME - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the name attribute.

naturalLogToBase2Log(double) - Static method in class com.aliasi.util.Math

Converts a natural logarithm to a base 2 logarithm.

nBest(char[], int, int, int) - Method in class com.aliasi.chunk.HmmChunker

Returns a size-bounded iterator over scored objects with joint probability estimates of tags and tokens as scores and chunkings as objects.

nBest(char[], int, int, int) - Method in interface com.aliasi.chunk.NBestChunker

Return the scored chunkings of the specified character sequence in order as an iterator in order of score.

nBest(char[], int, int, int) - Method in class com.aliasi.chunk.RescoringChunker

Returns the n-best chunkings of the specified character slice.

nBest(char[], int, int, int) - Method in class com.aliasi.crf.ChainCrfChunker

NBestChunker - Interface in com.aliasi.chunk

An NBestChunker is a chunker that is able to return results iterating over scored chunkings or scored chunks in order of decreasing likelihood.

nBestChunks(TagLattice<String>, int[], int[], int) - Method in class com.aliasi.chunk.BioTagChunkCodec

nBestChunks(char[], int, int, int) - Method in interface com.aliasi.chunk.ConfidenceChunker

Returns the n-best chunks in decreasing order of probability estimates.

nBestChunks(char[], int, int, int) - Method in class com.aliasi.chunk.HmmChunker

Returns an iterator over scored objects with conditional probability estimates for scores and chunks as objects.

nBestChunks(TagLattice<String>, int[], int[], int) - Method in class com.aliasi.chunk.IoTagChunkCodec

nBestChunks(char[], int, int, int) - Method in class com.aliasi.chunk.RescoringChunker

Returns the n-best chunks for the specified character slice up to the specified maximum number of chunks.

nBestChunks(TagLattice<String>, int[], int[], int) - Method in interface com.aliasi.chunk.TagChunkCodec

Returns an iterator over chunks extracted in order of highest probability up to the specified maximum number of results.

nBestChunks(char[], int, int, int) - Method in class com.aliasi.crf.ChainCrfChunker

nBestConditional(char[], int, int, int) - Method in class com.aliasi.chunk.HmmChunker

Returns a size-bounded iterator over scored objects with conditional probability estimates of tags and tokens as scores and chunkings as objects.

nBestConditional(char[], int, int, int) - Method in class com.aliasi.crf.ChainCrfChunker

Returns an iterator over n-best chunkings with scores normalized to conditional probabilities of the output given the input string slice.

nBestEvaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns the n-best evaluation in the form of a mapping from ranks to the number of times the reference chunking was that rank in the evaluation.

nBestHistogram() - Method in class com.aliasi.tag.NBestTaggerEvaluator

Return the histogram of results mapping ranks to the number of test cases where the correct result was at that rank.

nBestSize() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the n-best size for this spell checker.

NBestTagger<E> - Interface in com.aliasi.tag

The NBestTagger<E> interface for objects that tag a list of objects with multiple tagged results.

NBestTaggerEvaluator<E> - Class in com.aliasi.tag

An NBestTaggerEvaluator provides an evaluation framework for n-best taggers.

NBestTaggerEvaluator(NBestTagger<E>, int, int) - Constructor for class com.aliasi.tag.NBestTaggerEvaluator

Construct an n-best tagger evaluator using the specified tagger, restricting the response taggings to the maximum number of outputs specified, and writing the specified number of outputs to the last case string.

NBSP_CHAR - Static variable in class com.aliasi.util.Strings

The non-breakable space character.

negativeReference() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of negative reference cases.

negativeResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of negative response cases.

NEUTER_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory

The gender for neuters.

NEWLINE_CHAR - Static variable in class com.aliasi.util.Strings

The newline character.

newTermSet(int, int, int, LanguageModel.Tokenized) - Method in class com.aliasi.lm.TokenizedLM

Returns a list of scored n-grams ordered by the significance of the degree to which their counts in this model exceed their expected counts in a specified background model.

next() - Method in class com.aliasi.util.Iterators.Buffered

Returns the next object for this iterator.

next() - Method in class com.aliasi.util.Iterators.Filter

Returns the next value from the contained iterator that is accepted.

next() - Method in class com.aliasi.util.Iterators.Modifier

Returns the next element for this iterator, which is the object returned by the underlying iterator after undergoing modification by Iterators.Modifier.modify(Object).

next() - Method in class com.aliasi.util.Iterators.PrimitiveInt

Returns the next integer result.

nextContext(int, char) - Method in class com.aliasi.lm.CompiledNGramProcessLM

Returns the index of the context formed by appending the specified character to the context of the specified index.

nextPrime(int) - Static method in class com.aliasi.util.Math

Returns the smallest prime number that is strictly larger than the specified integer.

nextPrimitive() - Method in class com.aliasi.util.Iterators.PrimitiveInt

Returns the next primitive integer.

nextToken() - Method in class com.aliasi.test.unit.tokenizer.ConstantTokenizer

nextToken() - Method in class com.aliasi.tokenizer.Tokenizer

Returns the next token in the stream, or null if there are no more tokens.

nextWhitespace() - Method in class com.aliasi.test.unit.tokenizer.ConstantTokenizer

nextWhitespace() - Method in class com.aliasi.tokenizer.Tokenizer

Returns the next whitespace.

NGramBoundaryLM - Class in com.aliasi.lm

An NGramBoundaryLM provides a dynamic sequence language model for which training, estimation and pruning may be interleaved.

NGramBoundaryLM(int) - Constructor for class com.aliasi.lm.NGramBoundaryLM

Constructs a dynamic n-gram sequence language model with the specified maximum n-gram and default values for other parameters.

NGramBoundaryLM(int, int) - Constructor for class com.aliasi.lm.NGramBoundaryLM

Constructs a dynamic n-gram sequence language model with the specified maximum n-gram, specified maximum number of observed characters, and default values for other parameters.

NGramBoundaryLM(int, int, double, char) - Constructor for class com.aliasi.lm.NGramBoundaryLM

Construct a dynamic n-gram sequence language model with the specified maximum n-gram length, number of characters, interpolation ratio hyperparameter and boundary character.

NGramBoundaryLM(NGramProcessLM, char) - Constructor for class com.aliasi.lm.NGramBoundaryLM

Construct an n-gram boundary language model with the specified boundary character and underlying process language model.

NGramBoundaryLMTest - Class in com.aliasi.test.unit.lm

NGramBoundaryLMTest() - Constructor for class com.aliasi.test.unit.lm.NGramBoundaryLMTest

nGramCounts(int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

Returns a histogram of counts for n-grams of integers of the specified length, with a count of at least the specified minimum count.

nGramFrequencies(int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns an array of frequency counts for n-grams of the specified n-gram order sorted in descending frequency order.

nGramOrder() - Method in class com.aliasi.lm.TokenizedLM

Returns the order of the token n-gram model underlying this tokenized language model.

NGramProcessLM - Class in com.aliasi.lm

An NGramProcessLM provides a dynamic conditional process language model process for which training, estimation, and pruning may be interleaved.

NGramProcessLM(int) - Constructor for class com.aliasi.lm.NGramProcessLM

Constructs an n-gram process language model with the specified maximum n-gram length.

NGramProcessLM(int, int) - Constructor for class com.aliasi.lm.NGramProcessLM

Construct an n-gram language process with the specified maximum n-gram length and maximum number of characters.

NGramProcessLM(int, int, double) - Constructor for class com.aliasi.lm.NGramProcessLM

Construct an n-gram language process with the specified maximum n-gram length, number of characters, and interpolation ratio hyperparameter.

NGramProcessLM(int, double, TrieCharSeqCounter) - Constructor for class com.aliasi.lm.NGramProcessLM

Construct an n-gram process language model with the specified number of characters, interpolation parameter and character sequence counter.

NGramProcessLMTest - Class in com.aliasi.test.unit.lm

NGramProcessLMTest() - Constructor for class com.aliasi.test.unit.lm.NGramProcessLMTest

NGramTokenizerFactory - Class in com.aliasi.tokenizer

An NGramTokenizerFactory creates n-gram tokenizers of a specified minimum and maximun length.

NGramTokenizerFactory(int, int) - Constructor for class com.aliasi.tokenizer.NGramTokenizerFactory

Create an n-gram tokenizer factory with the specified minimum and maximum n-gram lengths.

NGramTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

NGramTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

NO_MATCH_SCORE - Static variable in interface com.aliasi.coref.Matcher

Value to return in cases where there can be no match.

NO_OP_DEFAULT_HANDLER - Static variable in class com.aliasi.xml.SimpleElementHandler

A default handler which performs no operation for any method calls.

nodeFeatures(int) - Method in class com.aliasi.crf.ChainCrfFeatures

Return the node features for the specified input position.

noElement() - Method in class com.aliasi.xml.ElementStackFilter

Returns true if there are no elements in the stack.

NOFRAMES - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element noframes.

noframes() - Method in class com.aliasi.xml.XHtmlWriter

Start an noframes element with no attributes.

noframes(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an noframes element with the specified attributes.

noframes(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noframes element with the specified attribute and value.

noframes(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noframes element with the specified attributes and values.

noframes(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noframes element with the specified attributes and values.

noframes(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noframes element with the specified attributes and values.

NOHREF - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the nohref attribute.

NON_CVS_DIRECTORY_FILE_FILTER - Static variable in class com.aliasi.util.Files

A file filter that accepts files that are directories that are not named "CVS", ignoring case.

NON_TRANSPOSING - Static variable in class com.aliasi.spell.EditDistance

Edit distance disallowing transposition.

noninformative() - Static method in class com.aliasi.stats.RegressionPrior

Returns the noninformative or uniform prior to use for maximum likelihood regression fitting.

nonZeroDimensions() - Method in class com.aliasi.matrix.AbstractVector

Returns an array with the non-zero dimensions of this vector.

nonZeroDimensions() - Method in class com.aliasi.matrix.SparseFloatVector

Returns the array of dimensions that have non-zero values.

nonZeroDimensions() - Method in interface com.aliasi.matrix.Vector

Returns the array of dimensions that have non-zero values.

normalize(String) - Method in class com.aliasi.spell.SpellEvaluator

Return the normalized form of a query or system output.

normalize(double[]) - Static method in class com.aliasi.stats.Statistics

Return an array of probabilities resulting from normalizing the specified probability ratios.

normalizeToken(String) - Method in class com.aliasi.coref.AbstractMentionFactory

Returns a normalized version of the specified token.

normalizeToken(String) - Method in class com.aliasi.coref.EnglishMentionFactory

Returns a normalized version of the specified token.

normalizeWhitespace(CharSequence, StringBuilder) - Static method in class com.aliasi.util.Strings

Appends a whitespace-normalized form of the specified character sequence into the specified string buffer.

normalizeWhitespace(CharSequence) - Static method in class com.aliasi.util.Strings

Returns a whitespace-normalized version of the specified character sequence.

normalPhrase() - Method in class com.aliasi.coref.CachedMention

Returns a normalized version of the phrase, defined to be the concatenation of the normal tokens by a single whitespace.

normalPhrase() - Method in interface com.aliasi.coref.Mention

Returns a normalized version of the phrase.

normalTokens() - Method in class com.aliasi.coref.CachedMention

Returns an array of normalized tokens for this phrase.

normalTokens() - Method in interface com.aliasi.coref.Mention

Returns an array of normalized tokens for this phrase.

NOSCRIPT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element noscript.

noscript() - Method in class com.aliasi.xml.XHtmlWriter

Start an noscript element with no attributes.

noscript(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an noscript element with the specified attributes.

noscript(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noscript element with the specified attribute and value.

noscript(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noscript element with the specified attributes and values.

noscript(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noscript element with the specified attributes and values.

noscript(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an noscript element with the specified attributes and values.

notationDecl(String, String, String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

notationDecl(String, String, String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

notationDecl(String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

nsToString(long) - Static method in class com.aliasi.util.Strings

Takes a time in nanoseconds and returns an hours, minutes and seconds representation.

numBareArguments() - Method in class com.aliasi.util.AbstractCommand

Returns the number of bare arguments supplied on the command line.

numCases() - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the number of test cases which have been provided to this evaluator.

numCases() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the total number of positive and negative reference cases for this evaluation.

numCases() - Method in class com.aliasi.tag.NBestTaggerEvaluator

Return the number of test cases in this evaluation.

numCases() - Method in class com.aliasi.tag.TaggerEvaluator

Returns the number of cases for this evaluation.

numCategories() - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the number of categories for the classifier being evaluated.

numCategories() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the number of categories for this confusion matrix.

numChains() - Method in class com.aliasi.stats.PotentialScaleReduction

Returns the number of chains for this estimator.

numChangedTopics() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the total number of topic assignments to tokens that changed between the last sample and this one.

numCharactersFollowing(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter

Returns the number of characters that when appended to the end of the specified character slice produce an extended slice with a non-zero count.

numCharactersFollowing(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter

numCharactersFollowing(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

numChunkingsRescored() - Method in class com.aliasi.chunk.RescoringChunker

Return the number of chunkings to generate from the base chunker for rescoring.

numClusters() - Method in class com.aliasi.cluster.KMeansClusterer

Returns the maximum number of clusters this clusterer will return.

numColumns() - Method in class com.aliasi.matrix.AbstractMatrix

numColumns() - Method in class com.aliasi.matrix.DenseMatrix

numColumns() - Method in interface com.aliasi.matrix.Matrix

Returns the number of columns in the matrix.

numColumns() - Method in class com.aliasi.matrix.ProximityMatrix

Returns the number of columns for this matrix.

numColumns() - Method in class com.aliasi.matrix.SvdMatrix

Returns the number of columns in this matrix.

numConsecutiveInsertionsAllowed() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the number of consecutive insertions allowed.

numDimensions() - Method in class com.aliasi.matrix.AbstractVector

Returns the number of dimensions of this vector.

numDimensions() - Method in class com.aliasi.matrix.DenseVector

Returns the number of dimensions for this dense vector.

numDimensions() - Method in class com.aliasi.matrix.SparseFloatVector

numDimensions() - Method in interface com.aliasi.matrix.Vector

Returns the number of dimensions of this vector.

numDimensions() - Method in class com.aliasi.stats.BernoulliDistribution

Returns two, the number of dimensions for a Bernoulli distribution.

numDimensions() - Method in class com.aliasi.stats.MultinomialDistribution

Returns the number of dimensions in this multinomial.

numDimensions() - Method in class com.aliasi.stats.MultivariateConstant

numDimensions() - Method in class com.aliasi.stats.MultivariateDistribution

Returns the number of dimensions of this multivariate distribution.

numDimensions() - Method in class com.aliasi.stats.MultivariateEstimator

Returns the number of dimensions for this multivariate estimator.

numDimensions() - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.MutVect

numDimensions() - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.Vector1

numDimensions() - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.Vector2

numDimensions() - Method in class com.aliasi.test.unit.stats.MultivariateDistributionTest.Distro

numDocuments() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of documents on which the sample was based.

numDocuments() - Method in class com.aliasi.spell.TfIdfDistance

Returns the total number of training documents.

numDocuments() - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Returns the number of documents in the collection.

numExtensions(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter

Returns the number of one integer extensions of the specified with non-zero counts.

numExtensions(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter

numFolds() - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Return the number of folds for this cross-validating corpus.

numInputDimensions() - Method in class com.aliasi.stats.LogisticRegression

Returns the dimensionality of inputs for this logistic regression model.

numNegativeRef() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Return the number of negative reference cases.

numNodes() - Method in class com.aliasi.lm.CompiledNGramProcessLM

Returns the total number of nodes in this language model's trie structure.

numOutcomes() - Method in class com.aliasi.lm.UniformBoundaryLM

Returns the number of outcomes for this uniform model.

numOutcomes() - Method in class com.aliasi.lm.UniformProcessLM

Returns the number of outcomes for this uniform model.

numOutcomes() - Method in class com.aliasi.stats.LogisticRegression

Returns the number of outcomes for this logistic regression model.

numOutcomes() - Method in class com.aliasi.stats.ZipfDistribution

Returns the number of non-zero outcomes for this Zipf distribution.

numPositiveRef() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the number of positive reference cases.

numRows() - Method in class com.aliasi.matrix.AbstractMatrix

numRows() - Method in class com.aliasi.matrix.DenseMatrix

numRows() - Method in interface com.aliasi.matrix.Matrix

Returns the number of rows in the matrix.

numRows() - Method in class com.aliasi.matrix.ProximityMatrix

Returns the number of rows for this matrix.

numRows() - Method in class com.aliasi.matrix.SvdMatrix

Returns the number of rows in this matrix.

numSamples() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns the number of samples seen by this estimator.

numSymbols() - Method in class com.aliasi.symbol.MapSymbolTable

numSymbols() - Method in interface com.aliasi.symbol.SymbolTable

Returns the number of symbols in this symbol table.

numSymbols() - Method in class com.aliasi.symbol.SymbolTableCompiler

Returns the number of symbols in this symbol table.

numTags() - Method in class com.aliasi.crf.ChainCrfFeatures

Returns the number of possible output tags for this feature set.

numTags() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

numTags() - Method in class com.aliasi.tag.TagLattice

Return the number of tags in this tag lattice.

numTerms() - Method in class com.aliasi.spell.TfIdfDistance

Returns the number of terms that have been seen during training.

numTokens() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of tokens in documents on which the sample was based.

numTokens() - Method in class com.aliasi.crf.ChainCrfFeatures

Returns the number of tokens for this feature set.

numTokens() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

numTokens() - Method in class com.aliasi.tag.NBestTaggerEvaluator

Return the total number of tokens in all test cases for this evaluator.

numTokens() - Method in class com.aliasi.tag.TaggerEvaluator

Returns the number of tokens tested in the complete set of test cases.

numTokens() - Method in class com.aliasi.tag.TagLattice

Returns the length of this tag lattice as measured by number of tokens.

numTokens() - Method in class com.aliasi.tokenizer.Tokenization

Return the number of tokens in this tokenization.

numTopics() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of topics for this sample.

numTopics() - Method in class com.aliasi.cluster.LatentDirichletAllocation

Returns the number of topics in this LDA model.

numTrainingCases() - Method in class com.aliasi.hmm.AbstractHmmEstimator

Return the number of taggings handled.

numTrainingChars() - Method in class com.aliasi.spell.TrainSpellChecker

Returns the total length in characters of all text used to train the spell checker.

numTrainingSamples() - Method in class com.aliasi.stats.BernoulliEstimator

Returns the number of training samples provided for this estimator.

numTrainingSamples(boolean) - Method in class com.aliasi.stats.BernoulliEstimator

Returns the number of training samples for the specified outcome, success or failure.

numTrainingTokens() - Method in class com.aliasi.hmm.AbstractHmmEstimator

Returns the number of tokens handled for training.

numTrials() - Method in class com.aliasi.stats.BinomialDistribution

Returns the number of trials for this binomial distribution.

numWords() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of distinct words in the documents on which the sample was based.

numWords() - Method in class com.aliasi.cluster.LatentDirichletAllocation

Returns the number of words on which this LDA model is based.

O

object() - Method in class com.aliasi.cluster.LeafDendrogram

Return the single object underlying this leaf dendrogram.

OBJECT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element object.

object() - Method in class com.aliasi.xml.XHtmlWriter

Start an object element with no attributes.

object(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an object element with the specified attributes.

object(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an object element with the specified attribute and value.

object(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an object element with the specified attributes and values.

object(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an object element with the specified attributes and values.

object(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an object element with the specified attributes and values.

ObjectHandler<E> - Interface in com.aliasi.corpus

The ObjectHandler interface specifies a handler with a single method that takes a single argument of the type of the generic paramter.

ObjectToCounterMap<E> - Class in com.aliasi.util

An ObjectToCounterMap maintains a mapping from objects to integer counters, which may be incremented or set.

ObjectToCounterMap() - Constructor for class com.aliasi.util.ObjectToCounterMap

Construct an object to counter mapping.

ObjectToCounterMap(int) - Constructor for class com.aliasi.util.ObjectToCounterMap

Construct an object to counter mapping with the specified initial size.

ObjectToCounterMapTest - Class in com.aliasi.test.unit.util

ObjectToCounterMapTest() - Constructor for class com.aliasi.test.unit.util.ObjectToCounterMapTest

ObjectToDoubleMap<E> - Class in com.aliasi.util

An ObjectToDoubleMap maintains a mapping from objects to double-valued counters, which may be incremented or set.

ObjectToDoubleMap() - Constructor for class com.aliasi.util.ObjectToDoubleMap

Construct an object to double mapping.

ObjectToDoubleMap(int) - Constructor for class com.aliasi.util.ObjectToDoubleMap

Construct an object to double mapping with the specified initial capacity.

ObjectToDoubleMapTest - Class in com.aliasi.test.unit.util

ObjectToDoubleMapTest() - Constructor for class com.aliasi.test.unit.util.ObjectToDoubleMapTest

ObjectToSet<K,M> - Class in com.aliasi.util

An ObjectToSet provides a Map from arbitrary objects to objects of class Set.

ObjectToSet() - Constructor for class com.aliasi.util.ObjectToSet

Construct a new object to set mapping.

ObjectToSetTest - Class in com.aliasi.test.unit.util

ObjectToSetTest() - Constructor for class com.aliasi.test.unit.util.ObjectToSetTest

observedCharacters() - Method in interface com.aliasi.lm.CharSeqCounter

Returns an array consisting of the characters with non-zero count in unicode order.

observedCharacters() - Method in class com.aliasi.lm.CharSeqMultiCounter

observedCharacters() - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

Returns the characters that have been observed for this language model, including the special boundary character.

observedCharacters() - Method in class com.aliasi.lm.CompiledNGramProcessLM

Returns the array of characters that have been observed for this language model.

observedCharacters() - Method in interface com.aliasi.lm.LanguageModel.Conditional

Returns the array of characters that have been observed for this model.

observedCharacters() - Method in class com.aliasi.lm.NGramBoundaryLM

Returns the characters that have been observed for this language model, including the special boundary character.

observedCharacters() - Method in class com.aliasi.lm.NGramProcessLM

observedCharacters() - Method in class com.aliasi.lm.TrieCharSeqCounter

observedIntegers() - Method in interface com.aliasi.lm.IntSeqCounter

Returns an array of all integers that have non-zero counts in the model.

observedIntegers() - Method in class com.aliasi.lm.TrieIntSeqCounter

offer(E) - Method in class com.aliasi.util.BoundedPriorityQueue

Insert the specified element into the queue if possible.

offer(E) - Method in class com.aliasi.util.ShortPriorityQueue

Return true if the specified element may be added to the queue.

OL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element ol.

ol() - Method in class com.aliasi.xml.XHtmlWriter

Start an ol element with no attributes.

ol(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an ol element with the specified attributes.

ol(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ol element with the specified attribute and value.

ol(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ol element with the specified attributes and values.

ol(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ol element with the specified attributes and values.

ol(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ol element with the specified attributes and values.

oldTermSet(int, int, int, LanguageModel.Tokenized) - Method in class com.aliasi.lm.TokenizedLM

Returns a list of scored n-grams ordered in reverse order of significance with respect to the background model.

ONBLUR - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onblur attribute.

ONCHANGE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onchange attribute.

ONCLICK - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onclick attribute.

ONDBLCLICK - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the ondblclick attribute.

ONE - Static variable in class com.aliasi.util.BinaryMap

The constant used for the Integer with value 1.

oneVersusAll(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the first-best one-versus-all precision-recall evaluation of the classification of the specified reference category versus all other categories.

oneVsAll(int) - Method in class com.aliasi.classify.ConfusionMatrix

Returns the one-versus-all precision-recall evaluation for the specified category index.

ONFOCUS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onfocus attribute.

ONKEYDOWN - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onkeydown attribute.

ONKEYPRESS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onkeypress attribute.

ONKEYUP - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onkeyup attribute.

OnlineNormalEstimator - Class in com.aliasi.stats

An OnlineNormalEstimator provides an object that estimates means, variances, and standard deviations for a stream of numbers presented one at a time.

OnlineNormalEstimator() - Constructor for class com.aliasi.stats.OnlineNormalEstimator

Construct an instance of an online normal estimator that has seen no data.

OnlineNormalEstimatorTest - Class in com.aliasi.test.unit.stats

OnlineNormalEstimatorTest() - Constructor for class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

ONLOAD - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onload attribute.

ONMOUSEDOWN - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onmousedown attribute.

ONMOUSEMOVE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onmousemove attribute.

ONMOUSEOUT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onmouseout attribute.

ONMOUSEOVER - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onmouseover attribute.

ONMOUSEUP - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onmouseup attribute.

ONRESET - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onreset attribute.

ONSELECT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onselect attribute.

ONSUBMIT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onsubmit attribute.

ONUNLOAD - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the onunload attribute.

OPTGROUP - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element optgroup.

optgroup() - Method in class com.aliasi.xml.XHtmlWriter

Start an optgroup element with no attributes.

optgroup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an optgroup element with the specified attributes.

optgroup(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an optgroup element with the specified attribute and value.

optgroup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an optgroup element with the specified attributes and values.

optgroup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an optgroup element with the specified attributes and values.

optgroup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an optgroup element with the specified attributes and values.

OPTION - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element option.

option() - Method in class com.aliasi.xml.XHtmlWriter

Start an option element with no attributes.

option(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an option element with the specified attributes.

option(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an option element with the specified attribute and value.

option(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an option element with the specified attributes and values.

option(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an option element with the specified attributes and values.

option(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an option element with the specified attributes and values.

order() - Method in class com.aliasi.matrix.MinkowskiDistance

Returns the order of this Minkowski distance.

order() - Method in class com.aliasi.matrix.SvdMatrix

Returns the order of this factorization.

OTHER_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer

The other category for non-digits, non-letters and non-punctuation tokens of a single character long.

OUT_TAG - Static variable in class com.aliasi.chunk.BioTagChunkCodec

Default name of out tag, "O".

outcome(String) - Method in class com.aliasi.stats.MultivariateConstant

outcome(String) - Method in class com.aliasi.stats.MultivariateDistribution

Return the outcome for the specified label.

outcome(String) - Method in class com.aliasi.stats.MultivariateEstimator

Return the outcome for the specified label.

outLM() - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker

Returns the process language model for non-chunks.

overlap(Chunk, Chunk) - Static method in class com.aliasi.chunk.ChunkingImpl

Returns true if the chunks overlap at least one character position.

P

P - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element p.

p() - Method in class com.aliasi.xml.XHtmlWriter

Start an p element with no attributes.

p(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an p element with the specified attributes.

p(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an p element with the specified attribute and value.

p(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an p element with the specified attributes and values.

p(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an p element with the specified attributes and values.

p(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an p element with the specified attributes and values.

padding(int) - Static method in class com.aliasi.util.Strings

Returns a string consisting of the specified number of default separator characters Strings.DEFAULT_SEPARATOR_CHAR.

padding(StringBuilder, int) - Static method in class com.aliasi.util.Strings

Append the specified number of default separator characters Strings.DEFAULT_SEPARATOR_CHAR to the specified string buffer.

pair(E, E) - Static method in class com.aliasi.util.Iterators

Returns a newly constructed iterator over the specified pair of elements.

Pair<A,B> - Class in com.aliasi.util

The Pair class represents an immutable pair of objects of heterogeneous type.

Pair(A, B) - Constructor for class com.aliasi.util.Pair

Construct a pair consisting of the two specified elements.

PairTest - Class in com.aliasi.test.unit.util

PairTest() - Constructor for class com.aliasi.test.unit.util.PairTest

PARAM - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element param.

param() - Method in class com.aliasi.xml.XHtmlWriter

Start an param element with no attributes.

param(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an param element with the specified attributes.

param(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an param element with the specified attribute and value.

param(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an param element with the specified attributes and values.

param(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an param element with the specified attributes and values.

param(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an param element with the specified attributes and values.

parametersToString() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns a string-based representation of the parameters of this compiled spell checker.

parent() - Method in class com.aliasi.cluster.Dendrogram

Returns the dendrogram that immediately contains this dendrogram or null if this is a top-level dendrogram.

parse(String) - Method in class com.aliasi.corpus.Parser

Parse the specified system identifier, usually a URL name, passing extracted events to the handler.

parse(String, String) - Method in class com.aliasi.corpus.Parser

Parse the specified system identifier, usually a URL name, using the specified character encoding, passing extracted events to the handler.

parse(File) - Method in class com.aliasi.corpus.Parser

Parse the specified file, passing extracted events to the handler.

parse(File, String) - Method in class com.aliasi.corpus.Parser

Parse the specified file using the specified character encoding, passing events to the handler.

parse(InputSource) - Method in class com.aliasi.corpus.Parser

Parse the specified input source, passing extracted events to the handler.

parse(InputSource) - Method in class com.aliasi.corpus.StringParser

Parse the specified input source.

parse(InputSource) - Method in class com.aliasi.corpus.XMLParser

Parse the specified input source.

parser() - Method in class com.aliasi.corpus.DiskCorpus

Returns the data parser for this corpus.

Parser<H extends Handler> - Class in com.aliasi.corpus

The Parser abstract class provides methods for parsing content from an input source or character sequence and passing extracted events to a content handler.

Parser() - Constructor for class com.aliasi.corpus.Parser

Construct a parser with a null handler.

Parser(H) - Constructor for class com.aliasi.corpus.Parser

Construct a parser with the specified handler.

parseString(char[], int, int) - Method in class com.aliasi.corpus.InputSourceParser

Parse the specified character slice.

parseString(CharSequence) - Method in class com.aliasi.corpus.Parser

Parse the specified character sequence.

parseString(char[], int, int) - Method in class com.aliasi.corpus.Parser

Parse the specified character slice as a string input.

parseString(char[], int, int) - Method in class com.aliasi.tag.LineTaggingParser

partialSvd(int[][], double[][], int, double, double, double, double, Reporter, double, int, int) - Static method in class com.aliasi.matrix.SvdMatrix

Return the singular value decomposition of the specified partial matrix, using the specified search parameters.

partitionDistance(double) - Method in class com.aliasi.cluster.Dendrogram

Returns the partition produced by cutting this dendrogram at the specified maximum distance.

partitionK(int) - Method in class com.aliasi.cluster.Dendrogram

Return the partition of this dendrogram with the specified number of clusters.

pattern() - Method in class com.aliasi.tokenizer.RegExTokenizerFactory

Returns the regular expression pattern backing this tokenizer factory.

peek() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the highest scoring object in the priority queue, or null if the queue is empty.

peek() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the largest element in this queue according to the comparator, or null if the queue is empty.

peekLast() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the lowest scoring object in the priority queue, or null if the queue is empty.

peekLast() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the smallest element in this queue according to the comparator, or null if the queue is empty.

peekMax() - Method in class com.aliasi.util.MinMaxHeap

Returns the maximum element in the heap, or null if it is empty.

peekMin() - Method in class com.aliasi.util.MinMaxHeap

Returns the minimum element in the heap, or null if it is empty.

PerceptronClassifier<E> - Class in com.aliasi.classify

A PerceptronClassifier implements a binary classifier based on an averaged kernel-based perceptron.

PerceptronClassifier(Corpus<ObjectHandler<Classified<E>>>, FeatureExtractor<? super E>, KernelFunction, String, int, String, String) - Constructor for class com.aliasi.classify.PerceptronClassifier

Construct a perceptron classifier from the specified feature extractor, corpus with designated accept category, polynomial kernel degree and number of training iterations, and output accept and reject categories.

PerceptronClassifierTest - Class in com.aliasi.test.unit.classify

PerceptronClassifierTest() - Constructor for class com.aliasi.test.unit.classify.PerceptronClassifierTest

permutation(int) - Static method in class com.aliasi.stats.Statistics

Returns a permutation of the integers between 0 and the specified length minus one.

permutation(int, Random) - Static method in class com.aliasi.stats.Statistics

Returns a permutation of the integers between 0 and the specified length minus one using the specified randomizer.

permute(E[]) - Static method in class com.aliasi.util.Arrays

Randomly permutes the elements of the specified array using a freshly generated randomizer.

permute(E[], Random) - Static method in class com.aliasi.util.Arrays

Randomly permutes the elements of the specified array using the specified randomizer.

permute(int[]) - Static method in class com.aliasi.util.Arrays

Randomly permutes the elements of the specified integer array using a newly created randomizer.

permute(int[], Random) - Static method in class com.aliasi.util.Arrays

Randomly permutes the elements of the specified integer array using the specified randomizer.

permuteCorpus(Random) - Method in class com.aliasi.corpus.ListCorpus

Uses the specified random number generator to permute the training and test cases in the corpus.

permuteCorpus(Random) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Randomly permutes the corpus using the specified randomizer.

perTokenEval() - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Returns the tagger evaluation on a per-token basis.

perTypeEvaluation(String) - Method in class com.aliasi.chunk.ChunkingEvaluation

Returns a chunking evaluation which consists of the current chunking evaluation restricted to the specified type.

phiSquared() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the value of Pearson's φ² index of mean square contingency for this matrix.

phiSquared() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the φ² value.

phrase() - Method in class com.aliasi.coref.CachedMention

Returns the original phrase underlying this mention.

phrase() - Method in interface com.aliasi.coref.Mention

Returns the original phrase underlying this mention.

phrase() - Method in class com.aliasi.dict.DictionaryEntry

Returns the phrase for this dictionary entry.

phraseCountMap() - Method in class com.aliasi.spell.AutoCompleter

Returns the phrase counter for this auto completer.

phraseEntryIt(String) - Method in class com.aliasi.dict.AbstractDictionary

Returns an iterator over the dictionary entries with the specified phrase.

phraseEntryIt(String) - Method in interface com.aliasi.dict.Dictionary

Returns an iterator over the dictionary entries with the specified phrase.

phraseEntryIt(String) - Method in class com.aliasi.dict.MapDictionary

phraseEntryIt(String) - Method in class com.aliasi.dict.TrieDictionary

phraseEntryList(String) - Method in class com.aliasi.dict.AbstractDictionary

Returns the dictionary entries with the specified phrase.

phraseEntryList(String) - Method in interface com.aliasi.dict.Dictionary

Returns the dictionary entries with the specified phrase.

PoissonConstant - Class in com.aliasi.stats

A PoissonConstant implements a Poisson distribution with a fixed mean.

PoissonConstant(double) - Constructor for class com.aliasi.stats.PoissonConstant

Construct a constant Poisson distribution with the specified mean.

PoissonConstantTest - Class in com.aliasi.test.unit.stats

PoissonConstantTest() - Constructor for class com.aliasi.test.unit.stats.PoissonConstantTest

PoissonDistribution - Class in com.aliasi.stats

The PoissonDistribution abstract class is used for calculating Poisson distributions.

PoissonDistribution() - Constructor for class com.aliasi.stats.PoissonDistribution

Construct an abstract Poisson distribution.

PoissonDistributionTest - Class in com.aliasi.test.unit.stats

PoissonDistributionTest() - Constructor for class com.aliasi.test.unit.stats.PoissonDistributionTest

PoissonEstimator - Class in com.aliasi.stats

A PoissonEstimator implements the maximum likelihood Poisson distribution given training events.

PoissonEstimator() - Constructor for class com.aliasi.stats.PoissonEstimator

Construct a Poisson estimator.

PoissonEstimator(double, double) - Constructor for class com.aliasi.stats.PoissonEstimator

Construct a Poisson estimator with a prior set by the specified number of samples and mean value.

PoissonEstimatorTest - Class in com.aliasi.test.unit.stats

PoissonEstimatorTest() - Constructor for class com.aliasi.test.unit.stats.PoissonEstimatorTest

poll() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns and removes the highest scoring element in this queue, or null if it is empty.

poll() - Method in class com.aliasi.util.ShortPriorityQueue

Removes and returns the largest element in this queue, or returns null if the queue is empty.

PolynomialKernel - Class in com.aliasi.matrix

A PolynomialKernel provides a dot product over a fixed degree polynomial basis expansion of a vector.

PolynomialKernel(int) - Constructor for class com.aliasi.matrix.PolynomialKernel

Construct a polynomial kernel function of the specified degree.

PolynomialKernelTest - Class in com.aliasi.test.unit.matrix

PolynomialKernelTest() - Constructor for class com.aliasi.test.unit.matrix.PolynomialKernelTest

popMax() - Method in class com.aliasi.util.MinMaxHeap

Returns the maximum element in the heap after removing it, or returns null if the heap is empty.

popMin() - Method in class com.aliasi.util.MinMaxHeap

Returns the minimum element in the heap after removing it, or returns null if the heap is empty.

PorterStemmerTokenizerFactory - Class in com.aliasi.tokenizer

A PorterStemmerTokenizerFactory applies Porter's stemmer to the tokenizers produced by a base tokenizer factory.

PorterStemmerTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.PorterStemmerTokenizerFactory

Construct a tokenizer factory that applies Porter stemming to the tokenizers produced by the specified base factory.

PorterStemmerTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

PorterStemmerTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.PorterStemmerTokenizerFactoryTest

positiveReference() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of positive reference cases.

positiveResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of positive response cases.

possibleStart(String[], String[], int, int) - Method in class com.aliasi.sentences.HeuristicSentenceModel

Return true if the specified start index can be a sentence start in the specified array of tokens and whitespaces running up to the end token.

possibleStart(String[], String[], int, int) - Method in class com.aliasi.sentences.MedlineSentenceModel

Return true if the specified start index can be a sentence start in the specified array of tokens and whitespaces running up to the end token.

PotentialScaleReduction - Class in com.aliasi.stats

The PotentialScaleReduction class provides an online computationa of Rhat, the potential scale reduction statistic for measuring mixing and convergence of multiple Markov chain Monte Carlo (MCMC) samplers.

PotentialScaleReduction(int) - Constructor for class com.aliasi.stats.PotentialScaleReduction

Construct a potential scale reduction with the specified number of Markov chains for input.

PotentialScaleReduction(double[][]) - Constructor for class com.aliasi.stats.PotentialScaleReduction

Construct a potential scale reduction for the specified matrix Of estimates for each chain.

power(String, int) - Static method in class com.aliasi.util.Strings

Returns the result of concatenating the specified number of copies of the specified string.

prBreakevenPoint() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

prCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the precision-recall curve, interpolating if the specified flag is true.

prCurveTest() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

PRE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element pre.

pre() - Method in class com.aliasi.xml.XHtmlWriter

Start an pre element with no attributes.

pre(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an pre element with the specified attributes.

pre(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an pre element with the specified attribute and value.

pre(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an pre element with the specified attributes and values.

pre(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an pre element with the specified attributes and values.

pre(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an pre element with the specified attributes and values.

precision() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the precision.

precisionAt(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the precision score achieved by returning the top scoring documents up to (but not including) the specified rank.

precisionRecallEvaluation() - Method in class com.aliasi.chunk.ChunkingEvaluation

Return the scored precision-recall evaluation for this chunker.

PrecisionRecallEvaluation - Class in com.aliasi.classify

A PrecisionRecallEvaluation collects and reports a suite of descriptive statistics for binary classification tasks.

PrecisionRecallEvaluation() - Constructor for class com.aliasi.classify.PrecisionRecallEvaluation

Construct a precision-recall evaluation with all counts set to zero.

PrecisionRecallEvaluation(long, long, long, long) - Constructor for class com.aliasi.classify.PrecisionRecallEvaluation

Construction a precision-recall evaluation initialized with the specified counts.

PrecisionRecallEvaluationTest - Class in com.aliasi.test.unit.classify

PrecisionRecallEvaluationTest() - Constructor for class com.aliasi.test.unit.classify.PrecisionRecallEvaluationTest

PrefixedFeatureExtractor<E> - Class in com.aliasi.features

A PrefixedFeatureExtractor applies a specified prefix to all of the feature names from a base feature extractor.

PrefixedFeatureExtractor(String, FeatureExtractor<E>) - Constructor for class com.aliasi.features.PrefixedFeatureExtractor

Construct a feature extractor that adds the specified prefix to feature names extracted by the specified extractor.

PrefixedFeatureExtractorTest - Class in com.aliasi.test.unit.features

PrefixedFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.PrefixedFeatureExtractorTest

prefixMatches(int) - Method in class com.aliasi.suffixarray.CharSuffixArray

Returns a list of maximal spans of suffix array indexes which refer to suffixes that share a prefix of at least the specified minimum match length.

prefixMatches(int) - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns a list of maximal spans of suffix array indexes which refer to suffixes that share a prefix of at least the specified minimum match length.

prettyPrint() - Method in class com.aliasi.cluster.Dendrogram

Returns a pretty-printed version of this dendrogram with entries on a single line and indenting with scores to show the merges.

printPrecisionRecallCurve(double[][], PrintWriter) - Static method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Prints a precision-recall curve with F-measures.

printScorePrecisionRecallCurve(double[][], PrintWriter) - Static method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Prints a precision-recall curve with score.

prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM

This method is a convenience implementation of the Model interface which returns the result of raising 2.0 to the power of the result of a call to CompiledNGramBoundaryLM.log2Estimate(CharSequence).

prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM

This method is a convenience implementation of the Model interface which returns the result of raising 2.0 to the power of the result of a call to CompiledNGramProcessLM.log2Estimate(CharSequence).

prob(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM

This method is a convenience implementation of the Model interface which returns the result of raising 2.0 to the power of the result of a call to NGramBoundaryLM.log2Estimate(CharSequence).

prob(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM

prob(E) - Method in interface com.aliasi.stats.Model

Returns the probability of the specified object.

probability(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the probability of the specified outcome in this distribution.

probability(long) - Method in class com.aliasi.stats.BernoulliDistribution

Returns the probability of the specified outcome.

probability(long) - Method in class com.aliasi.stats.BinomialDistribution

Returns the probability of the specified outcome.

probability(long) - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the probability of the specified outcome.

probability(long) - Method in class com.aliasi.stats.MultivariateConstant

probability(String) - Method in class com.aliasi.stats.MultivariateDistribution

Returns the probability of the outcome specified by label.

probability(long) - Method in class com.aliasi.stats.MultivariateDistribution

Return the probability of the specified outcome in this multivariate distribution.

probability(long) - Method in class com.aliasi.stats.MultivariateEstimator

Returns the multivariate probability estimate for the specified outcome.

probability(long) - Method in class com.aliasi.stats.PoissonDistribution

Returns the probability estimate in this Poisson distribution for the specified outcome.

probability(long) - Method in class com.aliasi.stats.ZipfDistribution

Returns the probability of the outcome at the specified rank.

probability(long) - Method in class com.aliasi.test.unit.stats.AbstractDiscreteDistributionTest.Distro

probability(long) - Method in class com.aliasi.test.unit.stats.MultivariateDistributionTest.Distro

probCat(String) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns the probability estimate for the specified category.

probToken(String, String) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Returns the probability of the specified token in the specified category.

probTokenTest() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

probTokenTestUnknownCat() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

probTokenTestUnknownCatSerDeser() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

probTokenTestUnknownToken() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

probTokenTestUnknownTokenSerDeser() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

processingInstruction(String, String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

processingInstruction(String, String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

processingInstruction(String, String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

processingInstruction(String, String) - Method in class com.aliasi.xml.SAXWriter

Print a representation of the proecssing instruction.

processLog2Probability(String[]) - Method in class com.aliasi.lm.TokenizedLM

Returns the probability of the specified tokens in the underlying token n-gram distribution.

PROFILE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the profile attribute.

promote(Mention, int) - Method in class com.aliasi.coref.AbstractMentionFactory

Returns a new mention chain based on the specified mention.

promote(Mention, int) - Method in interface com.aliasi.coref.MentionFactory

Returns a new mention chain based on the specified mention.

proximity() - Method in class com.aliasi.classify.KnnClassifier

Returns the proximity measure for this KNN classifier.

proximity(Vector, Vector) - Method in class com.aliasi.matrix.CosineDistance

Returns the cosine between the specified vectors.

proximity(Vector, Vector) - Method in class com.aliasi.matrix.DotProductKernel

Returns the dot product of the input vectors.

proximity(Vector, Vector) - Method in class com.aliasi.matrix.GaussianRadialBasisKernel

Returns the result of applying this Guassian radial basis kernel to the specified vectors.

proximity(Vector, Vector) - Method in class com.aliasi.matrix.HyperbolicTangentKernel

Returns the result of applying the hyperbolic tangent kernel function to to the specified vectors.

proximity(Vector, Vector) - Method in interface com.aliasi.matrix.KernelFunction

Return the result of applying the kernel function to the specified pair of vectors.

proximity(Vector, Vector) - Method in class com.aliasi.matrix.PolynomialKernel

Returns the result of applying the polynomial kernel of this class's degree to the specified vectors.

proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.EditDistance

Returns the proximity between the character sequences.

proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaccardDistance

Returns the proximity between the specified character sequences.

proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaroWinklerDistance

Return the Jaro-Winkler comparison value between the specified character sequences.

proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.TfIdfDistance

Returns the TF/IDF proximity between the specified character sequences.

proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weighted proximity between the specified character sequences.

Proximity<E> - Interface in com.aliasi.util

The Proximity interface provides a general method for defining closeness between two objects.

proximity(E, E) - Method in interface com.aliasi.util.Proximity

Returns the distance between the specified pair of objects.

ProximityMatrix - Class in com.aliasi.matrix

A ProximityMatrix provides a pseudo-metric of proximities between points.

ProximityMatrix(int) - Constructor for class com.aliasi.matrix.ProximityMatrix

Construct a square proximity matrix of the specified dimensionality, with all values initially zero.

ProximityMatrixTest - Class in com.aliasi.test.unit.matrix

ProximityMatrixTest() - Constructor for class com.aliasi.test.unit.matrix.ProximityMatrixTest

prScoreCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the array of recall/precision/score operating points according to the scores of the cases.

prune(int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Removes strings with counts below the specified minimum.

prune(int) - Method in class com.aliasi.lm.TrieIntSeqCounter

Removes all counts for sequences that are less than the minimum count.

prune() - Method in class com.aliasi.util.FastCache

Prunes this cache by (approximately) dividing the counts of entries by two and removing the ones with zero counts.

prune() - Method in class com.aliasi.util.HardFastCache

Prunes this cache by (approximately) dividing the counts of entries by two and removing the ones with zero counts.

prune(int) - Method in class com.aliasi.util.ObjectToCounterMap

Removes all entries in this counter that have less than the specified minimum count.

pruneLM(int) - Method in class com.aliasi.spell.TrainSpellChecker

Prunes the underlying character language model to remove substring counts of less than the specified minimum.

pruneTokens(int) - Method in class com.aliasi.spell.TrainSpellChecker

Prunes the set of collected tokens of all tokens with count less than the specified minimum.

PruneTrieReader - Class in com.aliasi.lm

A PruneTrieReader filters a contained trie reader by removing all subtrees whose counts fall below a specified minimum.

PruneTrieReader(TrieReader, long) - Constructor for class com.aliasi.lm.PruneTrieReader

Construct a scaling trie reader wrapping the specified reader which deletes all subtrees with counts below the specified minimum.

PruneTrieReaderTest - Class in com.aliasi.test.unit.lm

PruneTrieReaderTest() - Constructor for class com.aliasi.test.unit.lm.PruneTrieReaderTest

PUNCTUATION_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer

The punctuation category.

put(int, Map<String, ? extends Number>) - Method in class com.aliasi.test.unit.features.SerializableMockFeatureExtractor

put(int, String[], double[]) - Method in class com.aliasi.test.unit.features.SerializableMockFeatureExtractor

put(E, Integer) - Method in class com.aliasi.util.BinaryMap

Adds the mapping of the specified object to the specified value if the specified number is the Integer with value 1.

put(K, V) - Method in class com.aliasi.util.FastCache

Sets the value of the specified key to the specified value.

put(K, V) - Method in class com.aliasi.util.HardFastCache

Sets the value of the specified key to the specified value.

Q

Q - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element q.

q() - Method in class com.aliasi.xml.XHtmlWriter

Start an q element with no attributes.

q(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an q element with the specified attributes.

q(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an q element with the specified attribute and value.

q(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an q element with the specified attributes and values.

q(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an q element with the specified attributes and values.

q(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an q element with the specified attributes and values.

R

R - Variable in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

randomAccuracy() - Method in class com.aliasi.classify.ConfusionMatrix

The expected accuracy from a strategy of randomly guessing categories according to reference and response distributions.

randomAccuracy() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

The probability that the reference and response are the same if they are generated randomly according to the reference and response likelihoods.

randomAccuracyUnbiased() - Method in class com.aliasi.classify.ConfusionMatrix

The expected accuracy from a strategy of randomly guessing categories according to the average of the reference and response distributions.

randomAccuracyUnbiased() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

The probability that the reference and the response are the same if the reference and response likelihoods are both the average of the sample reference and response likelihoods.

randomTest() - Method in class com.aliasi.test.unit.matrix.MinkowskiDistanceTest

randomVals(int, int, int) - Static method in class com.aliasi.test.unit.io.BitInputTest

rankCount(String, int) - Method in class com.aliasi.classify.RankedClassifierEvaluator

Returns the number of times that the reference category's rank was the specified rank.

RankedClassification - Class in com.aliasi.classify

A RankedClassification provides a classification with an ordered n-best list of category results.

RankedClassification(String[]) - Constructor for class com.aliasi.classify.RankedClassification

Construct a ranked classification with the specified results ordered from best to worst.

RankedClassified<E> - Class in com.aliasi.classify

A RankedClassified represents an object that has been classified with a ranked classification.

RankedClassified(E, RankedClassification) - Constructor for class com.aliasi.classify.RankedClassified

Construct a classified object consisting of the specified object and classification.

RankedClassifier<E> - Interface in com.aliasi.classify

The RankedClassifier interface specifies a single classification method that returns n-best classifications of inputs.

RankedClassifierEvaluator<E> - Class in com.aliasi.classify

A RankedClassifierEvaluator provides an evaluation harness for ranked classifiers.

RankedClassifierEvaluator(RankedClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.RankedClassifierEvaluator

Construct a ranked classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.

rawToken(int) - Method in class com.aliasi.tag.StringTagging

Return the string underlying the token in the specified position.

read(ObjectInput) - Method in class com.aliasi.util.AbstractExternalizable

Read an object from the specified input stream and return it.

readBinary(int) - Method in class com.aliasi.io.BitInput

Reads the next value from the input using a fixed-length binary code of the specified number of bits.

readBit() - Method in class com.aliasi.io.BitInput

Reads the next bit from the input stream.

readBytesFromFile(File) - Static method in class com.aliasi.util.Files

Returns the array of bytes read from the specified file.

readCharsFromFile(File, String) - Static method in class com.aliasi.util.Files

Reads all of the bytes from the specified file and convert them to a character array using the specified character set.

readCount() - Method in class com.aliasi.lm.BitTrieReader

Read and return the next count from the underlying bit input.

readCount() - Method in class com.aliasi.lm.MultiTrieReader

readCount() - Method in interface com.aliasi.lm.TrieReader

Returns the count of the next tree.

readCounter(TrieReader, int) - Static method in class com.aliasi.lm.TrieCharSeqCounter

Reads a trie character sequence counter from the specified trie reader, restricting the result to the specified maximum n-gram.

readDelta() - Method in class com.aliasi.io.BitInput

Reads the next value from the input using an Elias delta code.

readDoubles(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable

Return the array of doubles read from the specified object input.

readExternal(ObjectInput) - Method in class com.aliasi.util.AbstractExternalizable

Read an object from the specified input using and store it for later resolution.

readFibonacci() - Method in class com.aliasi.io.BitInput

Reads the next value from the input using a Fibonacci code.

readFloats(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable

Return the array of floats read from the specified object input.

readFrom(InputStream) - Static method in class com.aliasi.lm.NGramBoundaryLM

Read a process language model from the specified input stream.

readFrom(InputStream) - Static method in class com.aliasi.lm.NGramProcessLM

Reads a language model from the specified input stream.

readFrom(InputStream) - Static method in class com.aliasi.lm.TrieCharSeqCounter

Reads a trie character sequence counter from the specified input stream.

readFromFile(File, String) - Static method in class com.aliasi.util.Files

Reads all of the bytes from the specified file and convert them to a string using the specified character set.

readGamma() - Method in class com.aliasi.io.BitInput

Reads the next value from the input using an Elias gamma code.

readInts(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable

Return the array of integers read from the specified object input.

readLineArray(File, String) - Static method in class com.aliasi.io.FileLineReader

Return the array of lines read from the specified file using the specified character encoding.

readLines() - Method in class com.aliasi.io.FileLineReader

Returns the list of lines remaining to be read from this line iterator and closes all resources.

readLines(File, String) - Static method in class com.aliasi.io.FileLineReader

Return the list of lines read from the specified file using the specified character encoding.

readObject(File) - Static method in class com.aliasi.util.AbstractExternalizable

Returns the result of reading a serialized object stored in the specified file.

READONLY - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the readonly attribute.

readResolve() - Method in class com.aliasi.util.AbstractExternalizable

Returns the object read.

readResourceObject(Class<?>, String) - Static method in class com.aliasi.util.AbstractExternalizable

Return the object read from an object input stream created from the specified resource relative to the specified class.

readResourceObject(String) - Static method in class com.aliasi.util.AbstractExternalizable

Returns the object read from an object input stream created from the specified absolute path name for a resource.

readRice(int) - Method in class com.aliasi.io.BitInput

Reads the next number from the input using a Rice coding with the specified number of fixed bits for the remainder.

readSymbol() - Method in class com.aliasi.lm.BitTrieReader

Read and return the next symbol from the underlying bit input.

readSymbol() - Method in class com.aliasi.lm.MultiTrieReader

readSymbol() - Method in interface com.aliasi.lm.TrieReader

Returns the identifier of the symbol leading from the root of the current tree to the daughter subtree for the symbol, or -1 if there are no more subtrees for the current node.

readUnary() - Method in class com.aliasi.io.BitInput

Reads the next value from the input using a unary code.

readUTFs(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable

Return the array of strings read from the specified object input.

readWrite(NGramProcessLM) - Static method in class com.aliasi.test.unit.lm.NGramProcessLMTest

reallocate(E[], int) - Static method in class com.aliasi.util.Arrays

Returns a copy of the specified array of objects of the specified size.

reallocate(int[], int) - Static method in class com.aliasi.util.Arrays

Returns a copy of the specified array of integers of the specified size.

reallocate(int[]) - Static method in class com.aliasi.util.Arrays

Reallocates the specified integer array to be 50 percent longer, with a minimum growth in length of one element.

recall() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the recall.

recallAtN() - Method in class com.aliasi.tag.NBestTaggerEvaluator

Return an array of recall values indexed by rank.

receivedError(int, double, double) - Method in class com.aliasi.stats.AnnealingSchedule

Receive a report from an optimizer about the effect of the specified learning rate in the specified epoch and return true if the update producing the error should be accepted or rejected.

reciprocalRank() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the reciprocal rank for this evaluation.

recluster(Set<Set<E>>, Set<E>, Reporter) - Method in class com.aliasi.cluster.KMeansClusterer

Recluster the specified initial clustering, adding in the unclustered elements, reporting progress to the specified reporter.

referenceEntropy() - Method in class com.aliasi.classify.ConfusionMatrix

The entropy of the decision problem itself as defined by the counts for the reference.

referenceLikelihood() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the sample reference likelihood, or prevalence, which is the number of positive references divided * by the total number of cases.

RegExChunker - Class in com.aliasi.chunk

A RegExChunker finds chunks that matches regular expressions.

RegExChunker(String, String, double) - Constructor for class com.aliasi.chunk.RegExChunker

Construct a chunker based on the specified regular expression, producing the specified chunk type and score.

RegExChunker(Pattern, String, double) - Constructor for class com.aliasi.chunk.RegExChunker

Construct a chunker based on the specified regular expression pattern, producing the specified chunk type and score.

RegExChunkerTest - Class in com.aliasi.test.unit.chunk

RegExChunkerTest() - Constructor for class com.aliasi.test.unit.chunk.RegExChunkerTest

RegExFilteredTokenizerFactory - Class in com.aliasi.tokenizer

A RegExFilteredTokenizerFactory modifies the tokens returned by a base tokenizer factory's tokizer by removing those that do not match a regular expression pattern.

RegExFilteredTokenizerFactory(TokenizerFactory, Pattern) - Constructor for class com.aliasi.tokenizer.RegExFilteredTokenizerFactory

Construct a regular-expression filtered tokenizer factory from the specified base factory and regular expression pattern that accepted tokens must match.

RegExFilteredTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

RegExFilteredTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.RegExFilteredTokenizerFactoryTest

RegExTokenizerFactory - Class in com.aliasi.tokenizer

A RegExTokenizerFactory creates a tokenizer factory out of a regular expression.

RegExTokenizerFactory(String) - Constructor for class com.aliasi.tokenizer.RegExTokenizerFactory

Construct a regular expression tokenizer factory using the specified regular expression for matching.

RegExTokenizerFactory(String, int) - Constructor for class com.aliasi.tokenizer.RegExTokenizerFactory

Construct a regular expression tokenizer factory using the specified regular expression for matching according to the specified flags.

RegExTokenizerFactory(Pattern) - Constructor for class com.aliasi.tokenizer.RegExTokenizerFactory

Construct a regular expression tokenizer factory with the specified pattern for matching.

RegExTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

RegExTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.RegExTokenizerFactoryTest

RegressionPrior - Class in com.aliasi.stats

A RegressionPrior instance represents a prior distribution on parameters for linear or logistic regression.

RegressionPriorTest - Class in com.aliasi.test.unit.stats

RegressionPriorTest() - Constructor for class com.aliasi.test.unit.stats.RegressionPriorTest

rejectCategory() - Method in class com.aliasi.classify.BinaryLMClassifier

Returns the category assigned to non-matching/rejected cases.

rejectionPrecision() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the rejection prection, or selectivity, value.

rejectionRecall() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the rejection recall, or specificity, value.

REL - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the rel attribute.

relativeAbsoluteDifference(double, double) - Static method in class com.aliasi.util.Math

Returns the relative absolute difference between the specified values, defined to be: relAbsDiff(x,y) = abs(x-y) / (abs(x) + abs(y))

remove(Object) - Method in class com.aliasi.util.BinaryMap

Remove the mapping with the specified key if it is present, returning the previous value, or null if it was previously undefined.

remove() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns and removes the highest scoring element in this queue, throwing an exception if it is empty.

remove(Object) - Method in class com.aliasi.util.BoundedPriorityQueue

Removes the specified object from the priority queue.

remove(Object) - Method in class com.aliasi.util.CompactHashSet

Removes the specified object from the set, returning true if the object was present before the remove.

remove() - Method in class com.aliasi.util.Iterators.Buffered

Throws an unsupported operation exception unless overridden by a subclass.

remove() - Method in class com.aliasi.util.Iterators.Filter

This operation is not supported.

remove() - Method in class com.aliasi.util.Iterators.Modifier

Remove the next element by delegating the call to the the underlying iterator.

remove() - Method in class com.aliasi.util.Iterators.PrimitiveInt

Throws unsupported operation exception.

remove() - Method in class com.aliasi.util.ShortPriorityQueue

Returns and removes the head of this queue, throwing an exception if it is empty.

remove(Object) - Method in class com.aliasi.util.ShortPriorityQueue

Return true and remove the largest element in the queue equal to the specified object, or return false if the specified object is not in the queue.

removeAll(Collection<?>) - Method in class com.aliasi.util.BoundedPriorityQueue

removeAll(Collection<?>) - Method in class com.aliasi.util.CompactHashSet

Removes all the elements of the specified collection from this set, returning true if the set was modified as a result.

removeDescendants(File) - Static method in class com.aliasi.util.Files

Remove the descendants of the specified directory, but not the directory itself.

removeElement(String) - Method in class com.aliasi.xml.RemoveElementsFilter

Add the specified qualified element name to the set of elements to remove.

RemoveElementsFilter - Class in com.aliasi.xml

A RemoveElementsFilter filters out specified elements from a stream of SAX events.

RemoveElementsFilter() - Constructor for class com.aliasi.xml.RemoveElementsFilter

Construct a filter to remove elements.

RemoveElementsFilter(DefaultHandler) - Constructor for class com.aliasi.xml.RemoveElementsFilter

Construct a filter to remove elements and pass events to the specified handler.

RemoveElementsFilterTest - Class in com.aliasi.test.unit.xml

RemoveElementsFilterTest() - Constructor for class com.aliasi.test.unit.xml.RemoveElementsFilterTest

removeMember(K, M) - Method in class com.aliasi.util.ObjectToSet

Removes the specified value from the set of values assigned to the specified key.

removeRecursive(File) - Static method in class com.aliasi.util.Files

Removes the specified file and if it is a directory, all contained files.

removeSymbol(String) - Method in class com.aliasi.symbol.MapSymbolTable

Removes the specified symbol from the symbol table.

removeSymbol(String) - Method in interface com.aliasi.symbol.SymbolTable

Removes the specified symbol from the symbol table if it was in the table and returns its identifier.

removeSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler

Throws an unsupported operation exception.

removeSynonym(String, String) - Method in class com.aliasi.coref.matchers.SynonymMatch

Ensure sthat the two phrases are no longer synonyms of each other.

replaceEntities(String, String) - Static method in class com.aliasi.util.Sgml

Returns the result of replacing all the entities appearing in the specified string with their corresponding unicode characters, using the specified replacement string for unknown entities.

replaceEntities(String) - Static method in class com.aliasi.util.Sgml

Convenience method to call Sgml.replaceEntities(String,String) with the question marked used for unknown entities.

report(LogLevel, String) - Method in class com.aliasi.io.Reporter

Reports the specified message if the specified level's severity is at or above the level of this reporter.

Reporter - Class in com.aliasi.io

A Reporter is the abstract base class on which reporters are defined that provide incremental feedback from long-running tasks at various levels of granularity.

Reporter() - Constructor for class com.aliasi.io.Reporter

Construct an instance of a reporter with log level LogLevel.NONE.

Reporter(LogLevel) - Constructor for class com.aliasi.io.Reporter

Construct an instance of a reporter with the specified log level.

Reporters - Class in com.aliasi.io

The Reporters utility class provides static factory methods for the creation of various instances of Reporter.

ReportersTest - Class in com.aliasi.test.unit.io

ReportersTest() - Constructor for class com.aliasi.test.unit.io.ReportersTest

rescale(double) - Method in class com.aliasi.lm.TrieIntSeqCounter

Rescales all counts by multiplying them by the specified factor.

rescore(Chunking) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker

Performs rescoring of the base chunking output using character language models.

rescore(Chunking) - Method in class com.aliasi.chunk.RescoringChunker

Returns the score for a chunking.

RescoringChunker<B extends NBestChunker> - Class in com.aliasi.chunk

A RescoringChunker provides first best, n-best and confidence chunking by rescoring n-best chunkings derived from a contained chunker.

RescoringChunker(B, int) - Constructor for class com.aliasi.chunk.RescoringChunker

Construct a rescoring chunker that contains the specified base chunker and considers the specified number of chunkings for rescoring.

reset() - Method in class com.aliasi.xml.TextAccumulatorHandler

Resets the underlying string buffer to the empty state by assigning it to a new buffer of the specified minimum length.

resetCategory(String, LanguageModel.Dynamic, int) - Method in class com.aliasi.classify.BinaryLMClassifier

Throws an UnsupportedOperationException.

resetCategory(String, L, int) - Method in class com.aliasi.classify.DynamicLMClassifier

Resets the specified category to the specified language model.

resetCount(String) - Method in class com.aliasi.stats.MultivariateEstimator

Resets the count for the specified outcome label to zero.

resolveEntity(String, String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

resolveEntity(String, String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

resolveEntity(String, String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

resolveMention(Mention, int) - Method in class com.aliasi.coref.WithinDocCoref

Resolves a specified mention at a specified offset, returning the integer identifier of the mention, or -1 if the mention could not be resolved, which should only occur for pronominal mentions.

responseEntropy() - Method in class com.aliasi.classify.ConfusionMatrix

The entropy of the response distribution.

responseLikelihood() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the sample response likelihood, which is the number of positive responses divided by the total number of cases.

retainAll(Collection<?>) - Method in class com.aliasi.util.CompactHashSet

Remove all elements from this set that are not members of the specified collection, returning true if this set was modified as a result of the operation.

returnAllMatches() - Method in class com.aliasi.dict.ExactDictionaryChunker

Returns true if this chunker returns all matches.

REV - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the rev attribute.

reverse(CharSequence) - Static method in class com.aliasi.util.Strings

Return the string that is the reverse of the specified character sequence.

reverseComparator() - Static method in class com.aliasi.util.ScoredObject

Returns a comparator that sorts in descending order of score.

rHat() - Method in class com.aliasi.stats.PotentialScaleReduction

Returns the Rhat statistic as defined in the class documentation.

rightSingularVectors() - Method in class com.aliasi.matrix.SvdMatrix

Returns a matrix in which the right singular vectors make up the columns.

rocCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns the receiver operating characteristic (ROC) curve for the cases ordered by score, interpolating if the specified flag is true.

rocCurveTest() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

ROOT_NODE_INDEX - Static variable in class com.aliasi.lm.CompiledNGramProcessLM

The index of the root node, namely 0.

ROWS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the rows attribute.

ROWSPAN - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the rowspan attribute.

rowVector(int) - Method in class com.aliasi.matrix.AbstractMatrix

Returns the specified row of this matrix.

rowVector(int) - Method in interface com.aliasi.matrix.Matrix

Returns the vector of values in the specified row.

rPrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Return the R precision.

rPrecisionTest() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

RULES - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the rules attribute.

run() - Method in class com.aliasi.util.AbstractCommand

Runs the abstract command.

S

S - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element s.

s() - Method in class com.aliasi.xml.XHtmlWriter

Start an s element with no attributes.

s(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an s element with the specified attributes.

s(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an s element with the specified attribute and value.

s(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an s element with the specified attributes and values.

s(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an s element with the specified attributes and values.

s(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an s element with the specified attributes and values.

SAMP - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element samp.

samp() - Method in class com.aliasi.xml.XHtmlWriter

Start an samp element with no attributes.

samp(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an samp element with the specified attributes.

samp(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an samp element with the specified attribute and value.

samp(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an samp element with the specified attributes and values.

samp(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an samp element with the specified attributes and values.

samp(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an samp element with the specified attributes and values.

sample(double[], Random) - Static method in class com.aliasi.stats.Statistics

Returns a sample from the discrete distribution represented by the specified cumulative probability ratios, using the specified random number generator.

sample(int) - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

sampleTopics(int[], int, int, int, Random) - Method in class com.aliasi.cluster.LatentDirichletAllocation

Returns the specified number of Gibbs samples of topics for the specified tokens using the specified number of burnin epochs, the specified lag between samples, and the specified randomizer.

SAXFilterHandler - Class in com.aliasi.xml

The SAXFilterHandler provides a base class for filtering SAX handlers.

SAXFilterHandler(DefaultHandler) - Constructor for class com.aliasi.xml.SAXFilterHandler

Construct a filter handler with the specified contained handler.

SAXFilterHandler() - Constructor for class com.aliasi.xml.SAXFilterHandler

Construct a filter handler that contains the no-op handler SimpleElementHandler.NO_OP_DEFAULT_HANDLER.

SAXFilterHandlerTest - Class in com.aliasi.test.unit.xml

SAXFilterHandlerTest() - Constructor for class com.aliasi.test.unit.xml.SAXFilterHandlerTest

SAXWriter - Class in com.aliasi.xml

A SAXWriter handles SAX events and writes a character-based representation to a specified output stream in the specified character encoding.

SAXWriter(OutputStream, String) - Constructor for class com.aliasi.xml.SAXWriter

Construct a SAX writer that writes to the specified output stream using the specified character set.

SAXWriter(OutputStream, String, boolean) - Constructor for class com.aliasi.xml.SAXWriter

Construct a SAX writer that writes to the specified output stream using the specified character set and specified XHTML compliance.

SAXWriter() - Constructor for class com.aliasi.xml.SAXWriter

Construct a SAX writer that does not have an output stream or character set specified.

SAXWriter(boolean) - Constructor for class com.aliasi.xml.SAXWriter

Construct a SAX writer with the specified XHTML compliance mode, but without an output stream or character set specified.

SAXWriterTest - Class in com.aliasi.test.unit.xml

SAXWriterTest() - Constructor for class com.aliasi.test.unit.xml.SAXWriterTest

ScaleTrieReader - Class in com.aliasi.lm

A ScaleTrieReader filters a contained trie reader by scaling all counts by a given multiple, removing all subtrees with zero root counts.

ScaleTrieReader(TrieReader, double) - Constructor for class com.aliasi.lm.ScaleTrieReader

Construct a scaling trie reader wrapping the specified reader and scaling counts with the specified value.

ScaleTrieReaderTest - Class in com.aliasi.test.unit.lm

ScaleTrieReaderTest() - Constructor for class com.aliasi.test.unit.lm.ScaleTrieReaderTest

scatter(Set<? extends E>, Distance<? super E>) - Static method in class com.aliasi.cluster.ClusterScore

Returns the scatter for the specified cluster based on the specified distance.

SCHEME - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the scheme attribute.

SCOPE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the scope attribute.

score() - Method in interface com.aliasi.chunk.Chunk

Returns the score of this chunk.

score() - Method in class com.aliasi.chunk.ChunkAndCharSeq

Return the underlying chunk's score.

score(int) - Method in class com.aliasi.classify.JointClassification

Returns the cross-entropy rate of the category and text at the specified rank.

score(int) - Method in class com.aliasi.classify.ScoredClassification

Returns the score of the category with the specified rank in the classification.

score() - Method in class com.aliasi.cluster.Dendrogram

Returns the proximity between the components of this dendrogram.

score() - Method in class com.aliasi.cluster.LeafDendrogram

Returns 0.0, the cost of a leaf dendrogram.

score() - Method in class com.aliasi.cluster.LinkDendrogram

Returns the cost of this dendogram.

score() - Method in class com.aliasi.dict.DictionaryEntry

Returns the score for this dictionary entry.

score() - Method in class com.aliasi.tag.ScoredTagging

Return the score for this tagging.

score() - Method in interface com.aliasi.util.Scored

Returns the score for this object.

score() - Method in class com.aliasi.util.ScoredObject

Returns the score for this scored object.

Scored - Interface in com.aliasi.util

The Scored interface should be implemented by objects that return a double-valued score.

ScoredClassification - Class in com.aliasi.classify

A ScoredClassification is a ranked classification where each category also has a score that determines the ranking.

ScoredClassification(String[], double[]) - Constructor for class com.aliasi.classify.ScoredClassification

Construct a scored classification from parallel arrays of categories and scores.

ScoredClassifier<E> - Interface in com.aliasi.classify

The ScoredClassifier interface specifies a single method for n-best scored classification.

ScoredClassifierEvaluator<E> - Class in com.aliasi.classify

A ScoredClassifierEvaluator provides an evaluation harness for score-based classifiers.

ScoredClassifierEvaluator(ScoredClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.ScoredClassifierEvaluator

Construct a scored classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.

ScoredObject<E> - Class in com.aliasi.util

A ScoredObject provides an implementation of the Scored interface with an attached object.

ScoredObject(E, double) - Constructor for class com.aliasi.util.ScoredObject

Construct a scored object from the specified object and score.

scoredObjectsOrderedByValueList() - Method in class com.aliasi.util.ObjectToDoubleMap

Returns a list of scored objects corresponding to the entries in decreasing order of value.

scoredOneVersusAll(String) - Method in class com.aliasi.classify.ScoredClassifierEvaluator

Returns a scored precision-recall evaluation of the classification of the specified reference category versus all other categories using the classification scores.

ScoredPrecisionRecallEvaluation - Class in com.aliasi.classify

A ScoredPrecisionRecallEvaluation provides an evaluation based on the precision-recall operating points and sensitivity-specificity operating points.

ScoredPrecisionRecallEvaluation() - Constructor for class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Construct a scored precision-recall evaluation.

ScoredPrecisionRecallEvaluationTest - Class in com.aliasi.test.unit.classify

ScoredPrecisionRecallEvaluationTest() - Constructor for class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

ScoredTagging<E> - Class in com.aliasi.tag

A ScoredTagging<E> represents a tagging of type E along with a real-valued score.

ScoredTagging(List<E>, List<String>, double) - Constructor for class com.aliasi.tag.ScoredTagging

Construct a scored tagging with the specified tokens, tags, and score.

SCRIPT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element script.

script() - Method in class com.aliasi.xml.XHtmlWriter

Start an script element with no attributes.

script(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an script element with the specified attributes.

script(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an script element with the specified attribute and value.

script(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an script element with the specified attributes and values.

script(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an script element with the specified attributes and values.

script(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an script element with the specified attributes and values.

secondCharEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the cost penalty for editing the second character in a token.

SELECT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element select.

select() - Method in class com.aliasi.xml.XHtmlWriter

Start an select element with no attributes.

select(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an select element with the specified attributes.

select(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an select element with the specified attribute and value.

select(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an select element with the specified attributes and values.

select(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an select element with the specified attributes and values.

select(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an select element with the specified attributes and values.

SELECTED - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the selected attribute.

SENTENCE_CHUNK_TYPE - Static variable in class com.aliasi.sentences.SentenceChunker

The type assigned to sentence chunks, namely "S".

SENTENCE_FINAL_COMPARATOR - Static variable in class com.aliasi.coref.WithinDocCoref

A comparator for comparing two mentions chains.

sentenceCaseToString(Chunking, Chunking, int) - Static method in class com.aliasi.sentences.SentenceEvaluation

Given a pair of reference and response chunkings, returns a string showing the underlying character sequence chunking pair, annotated with the sentence boundaries from each chunking, with linebreaks inserted every lineLength characters.

SentenceChunker - Class in com.aliasi.sentences

The SentenceChunker class uses a SentenceModel to implement sentence detection through the chunk.Chunker interface.

SentenceChunker(TokenizerFactory, SentenceModel) - Constructor for class com.aliasi.sentences.SentenceChunker

Construct a sentence chunker from the specified tokenizer factory and sentence model.

SentenceChunkerTest - Class in com.aliasi.test.unit.sentences

SentenceChunkerTest() - Constructor for class com.aliasi.test.unit.sentences.SentenceChunkerTest

SentenceEvaluation - Class in com.aliasi.sentences

A SentenceEvaluation stores and reports the results of evaluating a set of reference sentence chunkings and response sentence chunkings.

SentenceEvaluation() - Constructor for class com.aliasi.sentences.SentenceEvaluation

Construct a sentence evaluation.

SentenceEvaluator - Class in com.aliasi.sentences

A SentenceEvaluator handles reference chunkings by constructing a response chunking and adding them to a sentence evaluation.

SentenceEvaluator(SentenceChunker) - Constructor for class com.aliasi.sentences.SentenceEvaluator

Construct a sentence evaluator using the specified sentence chunker to construct responses.

sentenceModel() - Method in class com.aliasi.sentences.SentenceChunker

Returns the sentence model for this chunker.

SentenceModel - Interface in com.aliasi.sentences

The SentenceModel interface specifies a means of doing sentence segmentation from arrays of tokens and whitespaces.

SEPARATOR - Static variable in class com.aliasi.suffixarray.CharSuffixArray

A special separator character, used to mark the boundaries of documents within the character array.

sequence(Iterator<? extends E>, Iterator<? extends E>) - Static method in class com.aliasi.util.Iterators

Returns an iterator that runs through the first iterator's elements and then runs through the second iterator's elements.

sequence(List<? extends Iterator<? extends E>>) - Static method in class com.aliasi.util.Iterators

sequence(Iterator<? extends Iterator<? extends E>>) - Static method in class com.aliasi.util.Iterators

sequenceCounter() - Method in class com.aliasi.lm.TokenizedLM

Returns the integer sequence counter underlying this model.

SequenceSubstringMatch - Class in com.aliasi.coref.matchers

Implements a matching function that returns the score specified in the constructor if there is a token-wise match between the normal tokens of the mention and one of the mentions in the mention chain that is within a specified edit distance.

SequenceSubstringMatch(int) - Constructor for class com.aliasi.coref.matchers.SequenceSubstringMatch

Construct a sequence substring matcher that returns the specified score in the case of a match.

SequenceSubstringMatchTest - Class in com.aliasi.test.unit.coref.matchers

SequenceSubstringMatchTest() - Constructor for class com.aliasi.test.unit.coref.matchers.SequenceSubstringMatchTest

serDeser(NGramBoundaryLM) - Static method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

SerializableMockFeatureExtractor - Class in com.aliasi.test.unit.features

SerializableMockFeatureExtractor() - Constructor for class com.aliasi.test.unit.features.SerializableMockFeatureExtractor

serializeDeserialize(Serializable) - Static method in class com.aliasi.util.AbstractExternalizable

Returns the result of serializing the specified object and then reading the result as an object.

serializeOrCompile(Object, ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable

Serialize the object to the output if it is serializable, else compile it to the output if it is compilable but not serializable.

serializeTo(Serializable, File) - Static method in class com.aliasi.util.AbstractExternalizable

Serializes the specified serializable object to the specified file.

set(int) - Method in class com.aliasi.util.Counter

Sets the count to the specified value.

set(E, int) - Method in class com.aliasi.util.ObjectToCounterMap

Sets the value of the specified key to be the specified amount.

set(E, double) - Method in class com.aliasi.util.ObjectToDoubleMap

Sets the specified key to the specified value.

setAllowDelete(boolean) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets this spell checker to allow deletions if the specified value is true and to disallow them if it is false.

setAllowInsert(boolean) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets this spell checker to allow insertions if the specified value is true and to disallow them if it is false.

setAllowMatch(boolean) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets this spell checker to allow matches if the specified value is true and to disallow them if it is false.

setAllowSubstitute(boolean) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets this spell checker to allow substitutions if the specified value is true and to disallow them if it is false.

setAllowTranspose(boolean) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets this spell checker to allow transpositions if the specified value is true and to disallow them if it is false.

setAndKeepZeros(E, double) - Method in class com.aliasi.util.ObjectToDoubleMap

Sets the specified key to the specified value allowing 0.0

setCharEncoding(String) - Method in class com.aliasi.corpus.DiskCorpus

Sets the character encoding for this corpus.

setChunker(Chunker) - Method in class com.aliasi.chunk.ChunkerEvaluator

Set the underlying chunker to the specified value.

setClassifier(BaseClassifier<E>) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Set the classfier for this evaluator to the specified value.

setClassifier(ConditionalClassifier<E>) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator

Set the classifier being evaluated to the specified value.

setClassifier(JointClassifier<E>) - Method in class com.aliasi.classify.JointClassifierEvaluator

Set the classifier being evaluated to the specified value.

setClassifier(RankedClassifier<E>) - Method in class com.aliasi.classify.RankedClassifierEvaluator

Set the classifier being evaluated to the specified value.

setClassifier(ScoredClassifier<E>) - Method in class com.aliasi.classify.ScoredClassifierEvaluator

Set the classifier being evaluated to the specified value.

setDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegateHandler

Calling this method causes subsequent events embedded within the specified element to be delegated to the specified handler.

setDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegatingHandler

Set the specified handler to handle events contains in the the specified element.

setDocumentLocator(Locator) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

setDocumentLocator(Locator) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

setDocumentLocator(Locator) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

setDoNotEditTokens(Set<String>) - Method in class com.aliasi.spell.CompiledSpellChecker

Updates the set of do-not-edit tokens to be the specified value.

setDTDString(String) - Method in class com.aliasi.xml.SAXWriter

Sets the DTD to be written by this writer to the specified value.

setEditDistance(WeightedEditDistance) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets the edit distance for this spell checker to the specified value.

setEmissionCache(Map<String, double[]>) - Method in class com.aliasi.hmm.HmmDecoder

Sets the emission cache to the specified value.

setEmissionLog2Cache(Map<String, double[]>) - Method in class com.aliasi.hmm.HmmDecoder

Sets the log emission cache to the specified value.

setEntityType(String) - Method in class com.aliasi.coref.AbstractMentionChain

Set the entity type of this mention chain to the specified value.

setFirstCharEditCost(double) - Method in class com.aliasi.spell.CompiledSpellChecker

Set the first character edit cost to the specified value.

setFold(int) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Set the current fold to the specified value.

setGender(String) - Method in class com.aliasi.coref.AbstractMentionChain

Set this chain's gender to the specified value.

setHandler(H) - Method in class com.aliasi.corpus.Parser

Sets the content handler to the specified value.

setHandler(DefaultHandler) - Method in class com.aliasi.xml.SAXFilterHandler

Sets the contained handler to the specified value.

setKnownTokenEditCost(double) - Method in class com.aliasi.spell.CompiledSpellChecker

Set the known token edit cost to the specified value.

setLambdaFactor(double) - Method in class com.aliasi.lm.NGramProcessLM

Sets the value of the interpolation ratio hyperparameter to the specified value.

setLanguageModel(CompiledNGramProcessLM) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets the language model for this spell checker to the specified value.

setLengthNorm(double) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Set the length normalization factor to the specified value.

setLevel(LogLevel) - Method in class com.aliasi.io.Reporter

Sets the log level for this reporter to the specified level and returns the reporter.

setLog2Beam(double) - Method in class com.aliasi.chunk.TokenShapeChunker

Sets the log (base 2) beam width for the decoder.

setLog2Beam(double) - Method in class com.aliasi.hmm.HmmDecoder

Sets the value of the log2 beam to the specified value.

setLog2EmissionBeam(double) - Method in class com.aliasi.hmm.HmmDecoder

Sets the log (base 2) emission beam width.

setMaxConfidenceChunks(int) - Method in class com.aliasi.chunk.ChunkerEvaluator

Sets the maximum number of chunks extracted by a confidence-based chunker for evaluation.

setMaxDistance(double) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer

Sets the maximum distance at which two clusters may be merged.

setMaxDistance(double) - Method in class com.aliasi.dict.ApproxDictionaryChunker

Set the max distance a string can be from a dictionary entry in order to be returned as a chunk by this chunker.

setMaxNBest(int) - Method in class com.aliasi.chunk.ChunkerEvaluator

Sets the maximum number of chunkings extracted by an n-best chunker for evaluation.

setMaxNBestReport(int) - Method in class com.aliasi.chunk.ChunkerEvaluator

Sets the maximum number of chunkings that will be reported in a case report.

setMaxResults(int) - Method in class com.aliasi.classify.BigVectorClassifier

Sets the maximum number of results returned by this classifier.

setMaxSearchQueueSize(int) - Method in class com.aliasi.spell.AutoCompleter

Sets the maximum search queue size to the specified value.

setMaxSize(int) - Method in class com.aliasi.util.BoundedPriorityQueue

Sets the maximum size of this bounded priority queue to the specified maximum size.

setMinimumTokenLengthToCorrect(int) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets a minimum character length for tokens to be eligible for editing.

setNBest(int) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets The n-best size to the specified value.

setNumChars(int) - Method in class com.aliasi.lm.NGramProcessLM

Sets the number of characters for this language model.

setNumChunkingsRescored(int) - Method in class com.aliasi.chunk.RescoringChunker

Set the number of base chunkings to rescore.

setNumConsecutiveInsertionsAllowed(int) - Method in class com.aliasi.spell.CompiledSpellChecker

Set the number of consecutive insertions allowed to the specified value.

setNumFolds(int) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Sets the number of folds to the specified value.

setOutputStream(OutputStream, String) - Method in class com.aliasi.xml.SAXWriter

Sets the output stream to which the XML is written, and the character set which is used to encode characters.

setReturnAllMatches(boolean) - Method in class com.aliasi.dict.ExactDictionaryChunker

Set whether to return all matches to the specified condition.

setSecondCharEditCost(double) - Method in class com.aliasi.spell.CompiledSpellChecker

Set the second character edit cost to the specified value.

setSystemId(String) - Method in class com.aliasi.corpus.DiskCorpus

Sets the system identifier for the corpus.

setTagger(MarginalTagger<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Set the tagger for this tagger evaluated to the specified tagger.

setTagger(NBestTagger<E>) - Method in class com.aliasi.tag.NBestTaggerEvaluator

Set the tagger to the specified value.

setTagger(Tagger<E>) - Method in class com.aliasi.tag.TaggerEvaluator

Set the tagger for this evaluator to the specified value.

setTokenizerFactory(TokenizerFactory) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets the tokenizer factory for input processing to the specified value.

setTokenSet(Set<String>) - Method in class com.aliasi.spell.CompiledSpellChecker

Sets the set of tokens that can be produced by editing.

setUp() - Method in class com.aliasi.test.unit.util.SmallSetTest

setValue(int, int, double) - Method in class com.aliasi.matrix.AbstractMatrix

Throw an unsupported operation exception.

setValue(int, double) - Method in class com.aliasi.matrix.AbstractVector

Throws an unsupported operation exception.

setValue(int, int, double) - Method in class com.aliasi.matrix.DenseMatrix

setValue(int, double) - Method in class com.aliasi.matrix.DenseVector

Sets the value of the specified dimension to the specified value.

setValue(int, int, double) - Method in interface com.aliasi.matrix.Matrix

Sets the value for the specified row and column to be the specified value.

setValue(int, int, double) - Method in class com.aliasi.matrix.ProximityMatrix

Sets the value for the specified row and column to the specified non-negative value as well as swapping row for column for symmetry.

setValue(int, double) - Method in interface com.aliasi.matrix.Vector

Sets the value of the specified dimension to the specified value.

setValue(int, double) - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.MutVect

setVerbose(boolean) - Method in class com.aliasi.chunk.ChunkerEvaluator

Sets the verbosity level of this evaluator to the specified value.

Sgml - Class in com.aliasi.util

The Sgml class contains static methods for processing SGML into unicode characters.

SgmlTest - Class in com.aliasi.test.unit.util

SgmlTest() - Constructor for class com.aliasi.test.unit.util.SgmlTest

SHAPE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the shape attribute.

sharedPrefixLength(String, String) - Static method in class com.aliasi.util.Strings

Returns the length of the longest shared prefix of the two input strings.

shiftMeans(double[], RegressionPrior) - Static method in class com.aliasi.stats.RegressionPrior

Returns the prior that shifts the means of the specified prior by the specified values.

ShortPriorityQueue<E> - Class in com.aliasi.util

A ShortPriorityQueue<E> is a length-bounded priority queue optimized for short lengths.

ShortPriorityQueue(Comparator<? super E>, int) - Constructor for class com.aliasi.util.ShortPriorityQueue

Construct a short priority queue that compares elements using the specified comparator with the specified maximum size.

ShortPriorityQueueTest - Class in com.aliasi.test.unit.util

ShortPriorityQueueTest() - Constructor for class com.aliasi.test.unit.util.ShortPriorityQueueTest

silent() - Static method in class com.aliasi.io.Reporters

Returns a silent reporter that writes its output nowhere.

SimpleElementHandler - Class in com.aliasi.xml

A SimpleElementHandler is a default handler that supplies utilities for simple elements and attributes.

SimpleElementHandler() - Constructor for class com.aliasi.xml.SimpleElementHandler

SimpleElementHandlerTest - Class in com.aliasi.test.unit.xml

SimpleElementHandlerTest() - Constructor for class com.aliasi.test.unit.xml.SimpleElementHandlerTest

SINGLE_SPACE_STRING - Static variable in class com.aliasi.util.Strings

A string consisting of a single space.

SingleLinkClusterer<E> - Class in com.aliasi.cluster

A SingleLinkClusterer implements standard single-link agglomerative clustering.

SingleLinkClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.SingleLinkClusterer

Construct a single-link clusterer with the specified distance bound.

SingleLinkClusterer(Distance<? super E>) - Constructor for class com.aliasi.cluster.SingleLinkClusterer

Construct a single-link clusterer with no distance bound.

SingleLinkClustererTest - Class in com.aliasi.test.unit.cluster

SingleLinkClustererTest() - Constructor for class com.aliasi.test.unit.cluster.SingleLinkClustererTest

singleton(E) - Static method in class com.aliasi.util.Iterators

Returns an iterator over the single specified element.

singularValue(int) - Method in class com.aliasi.matrix.SvdMatrix

Returns the singular value for the specified order.

singularValues() - Method in class com.aliasi.matrix.SvdMatrix

Returns the array of singular values for this decomposition.

size() - Method in class com.aliasi.classify.RankedClassification

Returns the number of categories in this classification.

size() - Method in class com.aliasi.cluster.Dendrogram

Returns the size of this dendrogram measured by the number of objects.

size() - Method in class com.aliasi.cluster.LeafDendrogram

Returns 1, the size of a leaf dendrogram.

size() - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Return the number of items in this corpus.

size() - Method in class com.aliasi.dict.AbstractDictionary

Returns the size of this dictionary as measured by number of dictionary entries.

size() - Method in interface com.aliasi.dict.Dictionary

Returns the size of this dictionary as measured by number of dictionary entries.

size() - Method in class com.aliasi.tag.Tagging

Returns the number of tokens and tags in this tagging.

size() - Method in class com.aliasi.util.BinaryMap

Returns the size of this mapping.

size() - Method in class com.aliasi.util.BoundedPriorityQueue

Returns the current number of elements in this priority queue.

size() - Method in class com.aliasi.util.CompactHashSet

Returns the number of objects in this set.

size() - Method in class com.aliasi.util.MinMaxHeap

Returns the current size of this heap.

size() - Method in class com.aliasi.util.ShortPriorityQueue

Returns the current number of elements in the queue.

size() - Method in class com.aliasi.util.Tuple

Returns the length of the tuple.

SIZE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the size attribute.

skip(long) - Method in class com.aliasi.io.BitInput

Skips and discards the specified number of bits in the input.

skipDelta() - Method in class com.aliasi.io.BitInput

Skips over and discards the next value from the input using an Elias delta code.

skipFibonacci() - Method in class com.aliasi.io.BitInput

Skips over and discards the next value from the input using a Fibonacci code.

skipGamma() - Method in class com.aliasi.io.BitInput

Skips over and discards the next value from the input using an Elias gamma code.

skippedEntity(String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

skippedEntity(String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

skippedEntity(String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

skipRice(int) - Method in class com.aliasi.io.BitInput

Skips over and discards the next value from the input using a Rice code with the specified number of fixed bits.

skipUnary() - Method in class com.aliasi.io.BitInput

Skips over and discards the next value from the input using a unary code.

sliceBits(long, int, int) - Static method in class com.aliasi.io.BitOutput

Returns a slice of bits in the specified long value running from the specified least significant bit for the specified number of bits.

SMALL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element small.

small() - Method in class com.aliasi.xml.XHtmlWriter

Start an small element with no attributes.

small(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an small element with the specified attributes.

small(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an small element with the specified attribute and value.

small(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an small element with the specified attributes and values.

small(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an small element with the specified attributes and values.

small(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an small element with the specified attributes and values.

SmallSet<E> - Class in com.aliasi.util

The SmallSet class implements immutable instances the Set interface tailored for sets with a small number of members.

SmallSetTest - Class in com.aliasi.test.unit.util

SmallSetTest() - Constructor for class com.aliasi.test.unit.util.SmallSetTest

soundexEncoding(String) - Static method in class com.aliasi.tokenizer.SoundexTokenizerFactory

Returns the Soundex encoding of the specified token.

SoundexTokenizerFactory - Class in com.aliasi.tokenizer

A SoundexTokenizerFactory modifies the output of a base tokenizer factory to produce tokens in soundex representation.

SoundexTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.SoundexTokenizerFactory

Construct a Soundex-based tokenizer factory that converts tokens produced by the specified base factory into their soundex representations.

SoundexTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

SoundexTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.SoundexTokenizerFactoryTest

span() - Method in class com.aliasi.chunk.ChunkAndCharSeq

Return the characters spanned by this chunk.

SPAN - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element span.

span() - Method in class com.aliasi.xml.XHtmlWriter

Start an span element with no attributes.

span(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an span element with the specified attributes.

span(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an span element with the specified attribute and value.

span(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an span element with the specified attributes and values.

span(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an span element with the specified attributes and values.

span(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an span element with the specified attributes and values.

SPAN_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the span attribute.

spanEndContext(int) - Method in class com.aliasi.chunk.ChunkAndCharSeq

Return a span of characters centered around the end of this chunk plus or minus the context length.

spanStartContext(int) - Method in class com.aliasi.chunk.ChunkAndCharSeq

Return a span of characters centered around the start of this chunk plus or minus the context length.

SparseFloatVector - Class in com.aliasi.matrix

A SparseFloatVector implements an immutable sparse vector with values represented as single-precision floating point numbers.

SparseFloatVector(Map<Integer, ? extends Number>) - Constructor for class com.aliasi.matrix.SparseFloatVector

Construct a sparse vector from the specified map.

SparseFloatVector(Map<Integer, ? extends Number>, int) - Constructor for class com.aliasi.matrix.SparseFloatVector

Constructs a sparse vector from the specified map with the specified number of dimensions.

SparseFloatVector(int[], float[], int) - Constructor for class com.aliasi.matrix.SparseFloatVector

Construct a sparse floating point vector with the specified keys defined at the specified values with the specified number of dimensions.

SparseFloatVectorTest - Class in com.aliasi.test.unit.matrix

SparseFloatVectorTest() - Constructor for class com.aliasi.test.unit.matrix.SparseFloatVectorTest

SpellChecker - Interface in com.aliasi.spell

The SpellChecker interface specifies a single method for first-best spelling correction.

SpellCheckerTest - Class in com.aliasi.test.unit.spell

SpellCheckerTest() - Constructor for class com.aliasi.test.unit.spell.SpellCheckerTest

SpellEvaluator - Class in com.aliasi.spell

The SpellEvaluator provides an evaluation harness for spell checkers.

SpellEvaluator(SpellChecker) - Constructor for class com.aliasi.spell.SpellEvaluator

Construct a spelling evaluator for the specified spell checker.

SpellEvaluator(SpellChecker, ObjectToCounterMap<String>) - Constructor for class com.aliasi.spell.SpellEvaluator

Construct a spelling evaluator for the specified spell checker with the specified token counts.

split(String, char) - Static method in class com.aliasi.util.Strings

Returns an array of substrings of the specified string, in order, with divisions before and after any instance of the specified character.

SRC - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the src attribute.

standardDeviation(String) - Method in class com.aliasi.features.ZScoreFeatureExtractor

Returns the standard deviation for the specified feature, or Double.NaN if the feature is not known.

standardDeviation() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns the maximum likelihood estimate of the standard deviation of the samples.

standardDeviation(double[]) - Static method in class com.aliasi.stats.Statistics

Returns the standard deviation of the specified array of input values.

standardDeviationUnbiased() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns the unbiased estimate of the standard deviation of the samples.

STANDBY - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the standby attribute.

start() - Method in interface com.aliasi.chunk.Chunk

Returns the index of the first character in this chunk.

startDocument() - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

startDocument() - Method in class com.aliasi.xml.DelegatingHandler

Sets this handler to start a new document by resetting any internal state.

startDocument() - Method in class com.aliasi.xml.ElementStackFilter

Start the document, clearing the element stack and delegating the start document even to the contained handler.

startDocument() - Method in class com.aliasi.xml.GroupCharactersFilter

Start the document, delegating the call to the contained handler.

startDocument() - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

startDocument() - Method in class com.aliasi.xml.SAXWriter

Prints the XML declaration, and DTD declaration if any.

startDocument() - Method in class com.aliasi.xml.TextAccumulatorHandler

Resets the string buffer.

startElement(String, String, String, Attributes) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.DelegateHandler

Starts the specified element with the specified attributes.

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.ElementStackFilter

Start the specified element, adding its qualified name and attributes to the stack, and delegating the SAX event to the contained handler.

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.GroupCharactersFilter

Start the specified element, delegating the SAX event to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) to handle any accumulated characters.

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.RemoveElementsFilter

Removes specified elements and passes others through to the contained handler.

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

startElement(String, String, String, Attributes) - Method in class com.aliasi.xml.SAXWriter

Prints the start element, using the qualified name, and sorting the attributes using the underlying string ordering.

startEndSimpleElement(String) - Method in class com.aliasi.xml.SimpleElementHandler

Starts and then ends a simple element of the specified local name.

startEndSimpleElement(String, Attributes) - Method in class com.aliasi.xml.SimpleElementHandler

Starts and then ends a simple element of the specified local name with the specified attributes.

startLog2Prob(String) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) of the start probability for the specified state.

startLog2Prob(int) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) of the start probability for the state with the specified identifier.

startLog2Prob(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) of the start probability for the state with the specified identifier.

startLog2Prob(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) of the start probability for the specified state.

startPrefixMapping(String, String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

startPrefixMapping(String, String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

startPrefixMapping(String, String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

startPrefixMapping(String, String) - Method in class com.aliasi.xml.SAXWriter

Handles the declaration of a namespace mapping from a specified URI to its identifying prefix.

startProb(String) - Method in class com.aliasi.hmm.AbstractHmm

Returns the start probability for the specified state.

startProb(int) - Method in class com.aliasi.hmm.AbstractHmm

Returns the start probability for the state with the specified identifier.

startProb(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the start probability for the state with the specified identifier.

startProb(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the start probability for the specified state.

startProb(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

startSimpleElement(String) - Method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and no attributes.

startSimpleElement(String, String, String) - Method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and a single attribute and value.

startSimpleElement(String, String, String, String, String) - Method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and a pair of attributes and values.

startSimpleElement(String, Attributes) - Method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and the specified local name, which is also provided as the qualified name.

startSimpleElement(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and no attributes.

startSimpleElement(DefaultHandler, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and a single attribute and value.

startSimpleElement(DefaultHandler, String, Attributes) - Static method in class com.aliasi.xml.SimpleElementHandler

Starts an element with a null namespace and the specified local name, which is also provided as the qualified name.

startTimeMillis() - Method in class com.aliasi.util.AbstractCommand

Return the time at which this command was constructed.

stateSymbolTable() - Method in class com.aliasi.hmm.AbstractHmm

Return the symbol table for the states for this HMM.

stateSymbolTable() - Method in interface com.aliasi.hmm.HiddenMarkovModel

Return the symbol table for the states for this HMM.

Statistics - Class in com.aliasi.stats

The Statistics class provides static utility methods for statistical computations.

StatisticsTest - Class in com.aliasi.test.unit.stats

StatisticsTest() - Constructor for class com.aliasi.test.unit.stats.StatisticsTest

stdOut() - Static method in class com.aliasi.io.Reporters

Return a reporter that writes to standard output using the UTF-8 character encoding.

stem(String) - Static method in class com.aliasi.tokenizer.PorterStemmerTokenizerFactory

Return the stem of the specified input string using the Porter stemmer.

stopSet() - Method in class com.aliasi.tokenizer.StopTokenizerFactory

Returns an unmodifiable view of the stop set underlying this stop tokenizer factory.

StopTokenizerFactory - Class in com.aliasi.tokenizer

A StopTokenizerFactory modifies a base tokenizer factory by removing tokens in a specified stop set.

StopTokenizerFactory(TokenizerFactory, Set<String>) - Constructor for class com.aliasi.tokenizer.StopTokenizerFactory

Construct a tokenizer factory that removes tokens in the specified stop set from tokenizers produced by the specified base factory.

StopTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

StopTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.StopTokenizerFactoryTest

storeTokens() - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Returns true if this evaluator is storing input tokens.

storeTokens() - Method in class com.aliasi.tag.TaggerEvaluator

Returns true if this evaluator stores input tokens.

stream(OutputStream, String) - Static method in class com.aliasi.io.Reporters

Return a reporter that writes to the specified output stream using the specified encoding.

Streams - Class in com.aliasi.util

Static utility methods for processing input and output streams, readers and writers.

StreamsTest - Class in com.aliasi.test.unit.util

StreamsTest() - Constructor for class com.aliasi.test.unit.util.StreamsTest

STRIKE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element strike.

strike() - Method in class com.aliasi.xml.XHtmlWriter

Start an strike element with no attributes.

strike(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an strike element with the specified attributes.

strike(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strike element with the specified attribute and value.

strike(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strike element with the specified attributes and values.

strike(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strike element with the specified attributes and values.

strike(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strike element with the specified attributes and values.

StringLengthFeatureExtractor - Class in com.aliasi.features

A StringLengthFeatureExtractor implements a feature extractor that provides string length features based on a specified set of string lengths.

StringLengthFeatureExtractor(int...) - Constructor for class com.aliasi.features.StringLengthFeatureExtractor

Construct a string-length feature extractor based on the specified lengths.

StringLengthFeatureExtractorTest - Class in com.aliasi.test.unit.features

StringLengthFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.StringLengthFeatureExtractorTest

StringParser<H extends Handler> - Class in com.aliasi.corpus

A StringParser is an abstract parser based on an abstract method for parsing from a character slice.

StringParser() - Constructor for class com.aliasi.corpus.StringParser

Construct a string parser with no handler specified.

StringParser(H) - Constructor for class com.aliasi.corpus.StringParser

Construct a string parser with the specified handler.

Strings - Class in com.aliasi.util

Static utility methods for processing strings, characters and string buffers.

StringsTest - Class in com.aliasi.test.unit.util

StringsTest() - Constructor for class com.aliasi.test.unit.util.StringsTest

StringTagging - Class in com.aliasi.tag

A StringTagging is a tagging over string-based tokens that indexes each token to a position in an underlying character sequence.

StringTagging(List<String>, List<String>, CharSequence, int[], int[]) - Constructor for class com.aliasi.tag.StringTagging

Construct a string tagging from the specified string-based tokens and tags, an underlying character sequence, and arrays representing the position at which each token starts and ends.

StringTagging(List<String>, List<String>, CharSequence, List<Integer>, List<Integer>) - Constructor for class com.aliasi.tag.StringTagging

Construct a string tagging from the specified string-based tokens and tags, an underlying character sequence, and lists representing the position at which each token starts and ends.

StringTaggingTest - Class in com.aliasi.test.unit.tag

StringTaggingTest() - Constructor for class com.aliasi.test.unit.tag.StringTaggingTest

stringTaggingToChunking(TagChunkCodec, ObjectHandler<StringTagging>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters

Return the chunking handler that converts chunkings to taggings using the specified codec.

STRONG - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element strong.

strong() - Method in class com.aliasi.xml.XHtmlWriter

Start an strong element with no attributes.

strong(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an strong element with the specified attributes.

strong(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strong element with the specified attribute and value.

strong(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strong element with the specified attributes and values.

strong(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strong element with the specified attributes and values.

strong(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an strong element with the specified attributes and values.

structurallyEquivalent(Dendrogram<E>, Dendrogram<E>) - Static method in class com.aliasi.cluster.Dendrogram

Return true if the specified dendrograms are structurally equivalent.

STYLE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element style.

style() - Method in class com.aliasi.xml.XHtmlWriter

Start an style element with no attributes.

style(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an style element with the specified attributes.

style(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an style element with the specified attribute and value.

style(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an style element with the specified attributes and values.

style(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an style element with the specified attributes and values.

style(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an style element with the specified attributes and values.

STYLE_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the style attribute.

SUB - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element sub.

sub() - Method in class com.aliasi.xml.XHtmlWriter

Start an sub element with no attributes.

sub(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an sub element with the specified attributes.

sub(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sub element with the specified attribute and value.

sub(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sub element with the specified attributes and values.

sub(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sub element with the specified attributes and values.

sub(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sub element with the specified attributes and values.

subSet(E, E) - Method in class com.aliasi.util.BoundedPriorityQueue

Return the set of elements in this queue greater than or equal to the specified lower bound and strictly less than the upper bound element according to the comparator for this queue.

subSet(E, E) - Method in class com.aliasi.util.ShortPriorityQueue

Return the set of elements in this queue greater than or equal to the specified lower bound and strictly less than the upper bound element according to the comparator for this queue.

substituteCost(String, String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch

Returns the cost to substitute the new token for the original token.

substituteWeight(char, char) - Method in class com.aliasi.spell.FixedWeightEditDistance

Returns the constant weight of substituting the inserted character for the deleted character.

substituteWeight(char, char) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weight of substituting the inserted character for the deleted character.

substring(int, int) - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns the substring of the original string that's spanned by the tokens starting at the specified suffix array index and running the specified maximum number of tokens (or until the token sequence ends).

substringCounter() - Method in class com.aliasi.lm.NGramBoundaryLM

Returns the underlying substring counter for this language model.

substringCounter() - Method in class com.aliasi.lm.NGramProcessLM

Returns the substring counter for this language model.

succeed() - Static method in class com.aliasi.test.unit.Asserts

Provides a test success with the default message.

succeed(String) - Static method in class com.aliasi.test.unit.Asserts

Provides a test success with the specified message for this test case.

SUCCESS_LABEL - Static variable in class com.aliasi.stats.BernoulliDistribution

The label for dimension one: "success".

successProbability() - Method in class com.aliasi.stats.BernoulliConstant

Returns the constant success probability for this distribution.

successProbability() - Method in class com.aliasi.stats.BernoulliDistribution

Returns the success probability for this distribution.

successProbability() - Method in class com.aliasi.stats.BernoulliEstimator

Returns the maximum likelihood estimate of success from the training samples provided.

suffix(int, int) - Method in class com.aliasi.suffixarray.CharSuffixArray

Returns the string that starts at position i in the character index and runs to the end of the character array or up to the specified maximum length.

suffixArray(int) - Method in class com.aliasi.suffixarray.CharSuffixArray

Return the value of the suffix array at the specified index.

suffixArray() - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Return the token suffix array backing this document suffix array.

suffixArray(int) - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns the value of the suffix array at the specified index.

suffixArrayLength() - Method in class com.aliasi.suffixarray.CharSuffixArray

Return the number of entries in this suffix array.

suffixArrayLength() - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns the number of tokens in the suffix array.

sum(double...) - Static method in class com.aliasi.util.Math

Returns the sum of the specified array of double values.

sum(int...) - Static method in class com.aliasi.util.Math

Returns the sum of the specified integer array.

SUMMARY - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the summary attribute.

SUP - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element sup.

sup() - Method in class com.aliasi.xml.XHtmlWriter

Start an sup element with no attributes.

sup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an sup element with the specified attributes.

sup(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sup element with the specified attribute and value.

sup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sup element with the specified attributes and values.

sup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sup element with the specified attributes and values.

sup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an sup element with the specified attributes and values.

svd(double[][], int, double, double, double, double, Reporter, double, int, int) - Static method in class com.aliasi.matrix.SvdMatrix

Returns the signular value decomposition of the specified complete matrix of values.

SvdMatrix - Class in com.aliasi.matrix

An SvdMatrix provides a means of storing a matrix that has been factored via a singular-value decomposition (SVD).

SvdMatrix(double[][], double[][], int) - Constructor for class com.aliasi.matrix.SvdMatrix

Construct a factored matrix using the specified row and column vectors at the specified order.

SvdMatrix(double[][], double[][], double[]) - Constructor for class com.aliasi.matrix.SvdMatrix

Construct an SVD matrix using the specified singular vectors and singular values.

SvdMatrixTest - Class in com.aliasi.test.unit.matrix

SvdMatrixTest() - Constructor for class com.aliasi.test.unit.matrix.SvdMatrixTest

symbols() - Method in class com.aliasi.symbol.SymbolTableCompiler

Returns the symbols in this symbol table.

symbolSet() - Method in class com.aliasi.symbol.MapSymbolTable

Returns the complete set of symbols in this symbol table.

symbolTable() - Method in class com.aliasi.lm.TokenizedLM

Returns the symbol table underlying this tokenized language model's token n-gram model.

SymbolTable - Interface in com.aliasi.symbol

Interface mapping symbols as strings to integer identifiers and vice-versa.

SymbolTableCompiler - Class in com.aliasi.symbol

A SymbolTableCompiler collects symbols represented as String instances and compiles them into a SymbolTable.

SymbolTableCompiler() - Constructor for class com.aliasi.symbol.SymbolTableCompiler

Construct a fresh symbol table compiler.

SymbolTableCompilerTest - Class in com.aliasi.test.unit.symbol

SymbolTableCompilerTest() - Constructor for class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

symbolToID(String) - Method in class com.aliasi.symbol.MapSymbolTable

symbolToID(String) - Method in interface com.aliasi.symbol.SymbolTable

Return the identifier corresponding to the specified symbol, -1 if the symbol does not exist.

symbolToID(String) - Method in class com.aliasi.symbol.SymbolTableCompiler

Return the identifier corresponding to the specified symbol, or -1 if the symbol does not exist.

symbolToIDInteger(String) - Method in class com.aliasi.symbol.MapSymbolTable

Returns an Integer representation of the symbol if it exists in the table or null if it does not.

symmetrizedKlDivergence(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns the symmetrized KL-divergence between the specified distributions.

symmetrizedKlDivergenceDirichlet(double[], double[]) - Static method in class com.aliasi.stats.Statistics

Returns the symmetric version of the Kullback-Leibler divergence between the Dirichlet distributions determined by the specified parameters.

SynonymMatch - Class in com.aliasi.coref.matchers

Implements a matching function that returns the score specified in the constructor if the mention has a synonym in the mention set as specified by the synonym dictionary.

SynonymMatch(int) - Constructor for class com.aliasi.coref.matchers.SynonymMatch

Construct an instance of synonym matching that returns the specified score in the case of a synonym match.

SynonymMatchTest - Class in com.aliasi.test.unit.coref.matchers

SynonymMatchTest() - Constructor for class com.aliasi.test.unit.coref.matchers.SynonymMatchTest

T

TABINDEX - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the tabindex attribute.

TABLE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element table.

table() - Method in class com.aliasi.xml.XHtmlWriter

Start an table element with no attributes.

table(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an table element with the specified attributes.

table(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an table element with the specified attribute and value.

table(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an table element with the specified attributes and values.

table(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an table element with the specified attributes and values.

table(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an table element with the specified attributes and values.

tag(int) - Method in class com.aliasi.crf.ChainCrf

Returns the tag for the specified tag index.

tag(List<E>) - Method in class com.aliasi.crf.ChainCrf

tag(int) - Method in class com.aliasi.crf.ChainCrfFeatures

Return the output tag with the specified index.

tag(int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

tag(List<String>) - Method in class com.aliasi.hmm.HmmDecoder

tag(List<E>) - Method in interface com.aliasi.tag.Tagger

Return the tagging for the specified list of tokens.

tag(int) - Method in class com.aliasi.tag.Tagging

Return the tag in the specified position for this tagging.

tag(int) - Method in class com.aliasi.tag.TagLattice

Return the tag with the specified symbol identifier.

TagChunkCodec - Interface in com.aliasi.chunk

A TagChunkCodec provides a means of coding chunkings as taggings and decoding (string) taggings back to chunkings.

TagChunkCodecAdapters - Class in com.aliasi.chunk

The TagChunkCodecAdapters class contains static utility methods for adapting tagging handlers to chunking handlers and vice-versa using tag-chunk codecs.

tagger() - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Returns the tagger for this evaluator.

tagger() - Method in class com.aliasi.tag.NBestTaggerEvaluator

Return the n-best tagger used for this evaluator.

Tagger<E> - Interface in com.aliasi.tag

The Tagger<E> interface for objects that tag a list of tokens of type E.

tagger() - Method in class com.aliasi.tag.TaggerEvaluator

Return the tagger for this evaluator.

TaggerEvaluator<E> - Class in com.aliasi.tag

A TaggerEvaluator provides evaluation for first-best taggers implementing the Tagger interface.

TaggerEvaluator(Tagger<E>, boolean) - Constructor for class com.aliasi.tag.TaggerEvaluator

Construct a tagger evaluator using the specified tagger that stores inputs if the specified flag is true.

Tagging<E> - Class in com.aliasi.tag

A Tagging<E> represents a first-best assignment of a sequence of tags to a sequence of tokens of type E.

Tagging(List<E>, List<String>) - Constructor for class com.aliasi.tag.Tagging

Construct a tagging with the specified list of tokens and tags.

TaggingTest - Class in com.aliasi.test.unit.tag

TaggingTest() - Constructor for class com.aliasi.test.unit.tag.TaggingTest

taggingToChunking(TagChunkCodec, ObjectHandler<Tagging<String>>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters

Return the chunking handler that converts chunkings to simple taggings using the specified codec.

TagLattice<E> - Class in com.aliasi.tag

The abstract base class TagLattice provides an interface for the output of a marginal tagger, based on forward, backward, and transition log potentials.

TagLattice() - Constructor for class com.aliasi.tag.TagLattice

Construct an empty tag lattice.

tagList() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

tagList() - Method in class com.aliasi.tag.TagLattice

Returns an unmodifiable view of the list of tags used in this lattice, indexed by identifier.

tagMarginal(List<E>) - Method in class com.aliasi.crf.ChainCrf

tagMarginal(List<String>) - Method in class com.aliasi.hmm.HmmDecoder

tagMarginal(List<E>) - Method in interface com.aliasi.tag.MarginalTagger

Return the marginal tagging for the specified list of input tokens.

tagNBest(List<E>, int) - Method in class com.aliasi.crf.ChainCrf

tagNBest(List<String>, int) - Method in class com.aliasi.hmm.HmmDecoder

tagNBest(List<E>, int) - Method in interface com.aliasi.tag.NBestTagger

Return an iterator over the n-best scored taggings for the specified input tokens up to a specified maximum n.

tagNBestConditional(List<E>, int) - Method in class com.aliasi.crf.ChainCrf

tagNBestConditional(List<String>, int) - Method in class com.aliasi.hmm.HmmDecoder

tagNBestConditional(List<E>, int) - Method in interface com.aliasi.tag.NBestTagger

Return an iterator over the n-best scored taggings for the specified input tokens up to a specified maximum n, with scores normalized to conditional probabilities.

tags() - Method in class com.aliasi.crf.ChainCrf

Returns an unmodifiable view of the array of tags underlying this CRF.

tags() - Method in class com.aliasi.tag.TaggerEvaluator

Return the list of tags seen so far by this tagger evaluator in either references or responses.

tags() - Method in class com.aliasi.tag.Tagging

Return an immutable list of tags for this tagging.

tagSet(Set<String>) - Method in class com.aliasi.chunk.BioTagChunkCodec

tagSet(Set<String>) - Method in class com.aliasi.chunk.IoTagChunkCodec

tagSet(Set<String>) - Method in interface com.aliasi.chunk.TagChunkCodec

Returns the complete set of tags used by this codec for the specified set of chunk types.

tagSet() - Method in class com.aliasi.tag.MarginalTaggerEvaluator

Returns an unmodifiable view of the tags used by this evaluator.

tagSymbolTable() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

tagSymbolTable() - Method in class com.aliasi.tag.TagLattice

Returns a symbol table which converts tags to identifiers and vice-versa.

TagWordLatticeTest - Class in com.aliasi.test.unit.hmm

TagWordLatticeTest() - Constructor for class com.aliasi.test.unit.hmm.TagWordLatticeTest

tailSet(E) - Method in class com.aliasi.util.BoundedPriorityQueue

Return the set of elements in this queue grearer than or equal to the specified element according to the comparator for this queue.

tailSet(E) - Method in class com.aliasi.util.ShortPriorityQueue

Return the set of elements in this queue grearer than or equal to the specified element according to the comparator for this queue.

TaxicabDistance - Class in com.aliasi.matrix

The TaxicabDistance class implements standard taxicab, or Manhattan distance between vectors.

TaxicabDistance() - Constructor for class com.aliasi.matrix.TaxicabDistance

Construct a new taxicab distance.

TaxicabDistanceTest - Class in com.aliasi.test.unit.matrix

TaxicabDistanceTest() - Constructor for class com.aliasi.test.unit.matrix.TaxicabDistanceTest

TBODY - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element tbody.

tbody() - Method in class com.aliasi.xml.XHtmlWriter

Start an tbody element with no attributes.

tbody(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an tbody element with the specified attributes.

tbody(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tbody element with the specified attribute and value.

tbody(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tbody element with the specified attributes and values.

tbody(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tbody element with the specified attributes and values.

tbody(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tbody element with the specified attributes and values.

TD - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element td.

td() - Method in class com.aliasi.xml.XHtmlWriter

Start an td element with no attributes.

td(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an td element with the specified attributes.

td(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an td element with the specified attribute and value.

td(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an td element with the specified attributes and values.

td(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an td element with the specified attributes and values.

td(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an td element with the specified attributes and values.

tee(Reporter...) - Static method in class com.aliasi.io.Reporters

Returns a compound reporter that sends reports to all of the specified reporters.

termFrequencyVector(CharSequence) - Method in class com.aliasi.spell.TokenizedDistance

Return the mapping from terms to their counts derived from the specified character sequence using the tokenizer factory in th is class.

termSet() - Method in class com.aliasi.spell.TfIdfDistance

Returns the set of known terms for this distance.

test() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

test() - Method in class com.aliasi.test.unit.tokenizer.IndoEuropean

test() - Method in class com.aliasi.test.unit.util.SgmlTest

test1() - Method in class com.aliasi.test.unit.chunk.RegExChunkerTest

test1() - Method in class com.aliasi.test.unit.classify.LogisticRegressionClassifierTest

test1() - Method in class com.aliasi.test.unit.crf.ChainCrfChunkerTest

test1() - Method in class com.aliasi.test.unit.hmm.TagWordLatticeTest

test1() - Method in class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

test1() - Method in class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

test1() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

test1() - Method in class com.aliasi.test.unit.util.PairTest

test1() - Method in class com.aliasi.test.unit.xml.ElementStackFilterTest

test1() - Method in class com.aliasi.test.unit.xml.GroupCharactersFilterTest

test1() - Method in class com.aliasi.test.unit.xml.RemoveElementsFilterTest

test1() - Method in class com.aliasi.test.unit.xml.SAXFilterHandlerTest

test1() - Method in class com.aliasi.test.unit.xml.TextContentFilterTest

test1Element() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

test1Exc() - Method in class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

test1ExcB() - Method in class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

test2() - Method in class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

test2() - Method in class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

test2() - Method in class com.aliasi.test.unit.xml.GroupCharactersFilterTest

test2() - Method in class com.aliasi.test.unit.xml.RemoveElementsFilterTest

test2() - Method in class com.aliasi.test.unit.xml.TextContentFilterTest

test23() - Method in class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

test2Elements1() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

test2Elements15() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

test3() - Method in class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

test3() - Method in class com.aliasi.test.unit.xml.GroupCharactersFilterTest

test4() - Method in class com.aliasi.test.unit.xml.GroupCharactersFilterTest

test5() - Method in class com.aliasi.test.unit.xml.GroupCharactersFilterTest

test5Elements1() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testA() - Method in class com.aliasi.test.unit.lm.NGramProcessLMTest

testA_AB() - Method in class com.aliasi.test.unit.lm.NGramProcessLMTest

testAbracadabra() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testAbracadabra() - Method in class com.aliasi.test.unit.suffixarray.CharSuffixArrayTest

testAbracadabra() - Method in class com.aliasi.test.unit.suffixarray.TokenSuffixArrayTest

testAbracadbra() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testAbstractTokenizerNext() - Method in class com.aliasi.test.unit.tokenizer.TokenizerTest

testAbstractTokenizerStart() - Method in class com.aliasi.test.unit.tokenizer.TokenizerTest

testAbstractTokenizerToArray() - Method in class com.aliasi.test.unit.tokenizer.TokenizerTest

testAbstractTokenizerWhitespace() - Method in class com.aliasi.test.unit.tokenizer.TokenizerTest

testAdd() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testAdd() - Method in class com.aliasi.test.unit.features.AddFeatureExtractorTest

testAdd() - Method in class com.aliasi.test.unit.util.ArraysTest

testAdd() - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

testAdd1() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testAdd2() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testAddUnsupported() - Method in class com.aliasi.test.unit.util.BoundedPriorityQueueTest

testAll() - Method in class com.aliasi.test.unit.features.PrefixedFeatureExtractorTest

testAll() - Method in class com.aliasi.test.unit.features.StringLengthFeatureExtractorTest

testAll() - Method in class com.aliasi.test.unit.io.FileExtensionFilterTest

testAllDigits() - Method in class com.aliasi.test.unit.util.StringsTest

testAllDigitsArray() - Method in class com.aliasi.test.unit.util.StringsTest

testAllLetters() - Method in class com.aliasi.test.unit.util.StringsTest

testAllocated() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testAllocated() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testAllOutputsSizes() - Method in class com.aliasi.test.unit.crf.ChainCrfTest

testAllPunctuation() - Method in class com.aliasi.test.unit.util.StringsTest

testAllPunctuationString() - Method in class com.aliasi.test.unit.util.StringsTest

testAllSymbols() - Method in class com.aliasi.test.unit.util.StringsTest

testAllUpperCase() - Method in class com.aliasi.test.unit.util.StringsTest

testAllWhitespace() - Method in class com.aliasi.test.unit.util.StringsTest

testAllWhitespaceArray() - Method in class com.aliasi.test.unit.util.StringsTest

testAllWhitespaceSB() - Method in class com.aliasi.test.unit.util.StringsTest

testAllZeroFolds() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testArgsList() - Method in class com.aliasi.test.unit.util.StringsTest

testArrayBounds() - Method in class com.aliasi.test.unit.util.TupleTest

testArrayIterators() - Method in class com.aliasi.test.unit.util.IteratorsTest

testArrayToString() - Method in class com.aliasi.test.unit.util.ArraysTest

testArrayToStringBuilder() - Method in class com.aliasi.test.unit.util.ArraysTest

testAsSet() - Method in class com.aliasi.test.unit.util.CollectionUtilsTest

testAverage() - Method in class com.aliasi.test.unit.stats.PoissonEstimatorTest

testBadBoundary() - Method in class com.aliasi.test.unit.suffixarray.DocumentTokenSuffixArrayTest

testBadUnHandle1() - Method in class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

testBadUnhandle2() - Method in class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

testBasic() - Method in class com.aliasi.test.unit.features.KnownFeatureExtractorTest

testBeginEnds() - Method in class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenizerFactoryTest

testBeginEndsPeriods() - Method in class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenizerFactoryTest

testBenford() - Method in class com.aliasi.test.unit.stats.MultinomialDistributionTest

testBiggerGram() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testBinary() - Method in class com.aliasi.test.unit.io.BitInputTest

testBinaryExceptions() - Method in class com.aliasi.test.unit.io.BitInputTest

testBioCodecTagSet() - Method in class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

testBioCodecTagSet() - Method in class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

testBitInput() - Method in class com.aliasi.test.unit.io.BitInputTest

testBitInputStream() - Method in class com.aliasi.test.unit.io.BitInputTest

testBound() - Method in class com.aliasi.test.unit.suffixarray.CharSuffixArrayTest

testBoundaries() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testBoundaries() - Method in class com.aliasi.test.unit.cluster.SingleLinkClustererTest

testBoundaries() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testBoundaries() - Method in class com.aliasi.test.unit.sentences.HeuristicSentenceModelTest

testBoundaries() - Method in class com.aliasi.test.unit.sentences.IndoEuropeanSentenceModelTest

testBoundaries() - Method in class com.aliasi.test.unit.sentences.MedlineSentenceModelTest

testBoundariesExc() - Method in class com.aliasi.test.unit.cluster.SingleLinkClustererTest

testBoundary() - Method in class com.aliasi.test.unit.lm.UniformBoundaryLMTest

testBoundaryCons() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testBoundaryToken() - Method in class com.aliasi.test.unit.suffixarray.TokenSuffixArrayTest

testBounds() - Method in class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

testBruteForce() - Method in class com.aliasi.test.unit.spell.AutoCompleterTest

testBufferedOne() - Method in class com.aliasi.test.unit.util.IteratorsTest

testBufferedThreeExcA() - Method in class com.aliasi.test.unit.util.IteratorsTest

testBufferedThreeExcB() - Method in class com.aliasi.test.unit.util.IteratorsTest

testBufferedTwo() - Method in class com.aliasi.test.unit.util.IteratorsTest

testByteAsUnsigned() - Method in class com.aliasi.test.unit.util.MathTest

testCache() - Method in class com.aliasi.test.unit.features.CacheFeatureExtractorTest

testCache() - Method in class com.aliasi.test.unit.features.LengthNormFeatureExtractorTest

testCache() - Method in class com.aliasi.test.unit.features.ZScoreFeatureExtractorTest

testCapitalized() - Method in class com.aliasi.test.unit.util.StringsTest

testCaser() - Method in class com.aliasi.test.unit.spell.SpellCheckerTest

testCases() - Method in class com.aliasi.corpus.ListCorpus

Returns an unmodifiable view of the list of test cases underlying this corpus.

testCaseSensitivity() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testCaseSensitivity2() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testCategorize() - Method in class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenCategorizerTest

testCats1() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testCatsEmpty() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testCatSet() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testCharsets() - Method in class com.aliasi.test.unit.xml.SAXWriterTest

testChiSqExc1() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSqExc2() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSqExc3() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSqExc4() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSquare() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSquared() - Method in class com.aliasi.test.unit.stats.MultinomialDistributionTest

testChiSquaredIndependence() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testChiSquareExcs1() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSquareExcs2() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSquareExcs3() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSquareExcs4() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChiSquareMatrix() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testChoice() - Method in class com.aliasi.test.unit.dca.DiscreteChooserTest

testChunker() - Method in class com.aliasi.test.unit.tokenizer.TokenChunkerTest

testChunkHandler() - Method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

testChunkHandler() - Method in class com.aliasi.test.unit.chunk.CharLmRescoringChunkerTest

testClass() - Method in class com.aliasi.test.unit.stats.LogisticRegressionTest

testClassification() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testClassificationCompile() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testClassificationSerDeser() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testClear() - Method in class com.aliasi.test.unit.util.BoundedPriorityQueueTest

testClear() - Method in class com.aliasi.test.unit.util.FastCacheTest

testClear() - Method in class com.aliasi.test.unit.util.ShortPriorityQueueTest

testCloseInputStream() - Method in class com.aliasi.test.unit.util.StreamsTest

testCloseOutputStream() - Method in class com.aliasi.test.unit.util.StreamsTest

testCloseReader() - Method in class com.aliasi.test.unit.util.StreamsTest

testCloseWriter() - Method in class com.aliasi.test.unit.util.StreamsTest

testCoeff() - Method in class com.aliasi.test.unit.stats.BinomialDistributionTest

testCoeff() - Method in class com.aliasi.test.unit.stats.MultinomialDistributionTest

testCollocs() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testColVectors() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testComparator() - Method in class com.aliasi.test.unit.io.LogLevelTest

testComparators() - Method in class com.aliasi.test.unit.chunk.ChunkTest

testCompilation() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testCompile() - Method in class com.aliasi.test.unit.stats.PoissonConstantTest

testCompile() - Method in class com.aliasi.test.unit.util.AbstractExternalizableTest

testCompileOneCategory() - Method in class com.aliasi.test.unit.classify.DynamicLMClassifierTest

testCompleteExc1() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testCompleteExc2() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testCompleteLinkExc() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testComposedFactories() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testCompoundChunkers() - Method in class com.aliasi.test.unit.tokenizer.TokenChunkerTest

testConcatenate() - Method in class com.aliasi.test.unit.util.ArraysTest

testConcatenateObjectArray() - Method in class com.aliasi.test.unit.util.StringsTest

testConcatenateObjectArraySpacer() - Method in class com.aliasi.test.unit.util.StringsTest

testConcatenateObjectArrayStartEndSpacer() - Method in class com.aliasi.test.unit.util.StringsTest

testConcatenateObjectArrayStartSpacer() - Method in class com.aliasi.test.unit.util.StringsTest

testCons() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testCons() - Method in class com.aliasi.test.unit.hmm.HmmDecoderTest

testCons0() - Method in class com.aliasi.test.unit.tag.TaggingTest

testCons2() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testCons2() - Method in class com.aliasi.test.unit.tag.TaggingTest

testConsEx() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testConsEx1() - Method in class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

testConsEx2() - Method in class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

testConsExc1() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc1() - Method in class com.aliasi.test.unit.tag.TaggingTest

testConsExc2() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc3() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc4() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc5() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc6() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc7() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExc8() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConsExLen1() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLen2() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA1() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA2() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA3() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA4() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA5() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA6() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsExLenA7() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsLenOK() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testConsOk() - Method in class com.aliasi.test.unit.tag.StringTaggingTest

testConstants() - Method in class com.aliasi.test.unit.tokenizer.ConstantTokenizerTest

testConstants() - Method in class com.aliasi.test.unit.util.StringsTest

testConstantSubModels() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testConstruct() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testConstructor() - Method in class com.aliasi.test.unit.util.CounterTest

testConstructor() - Method in class com.aliasi.test.unit.util.ObjectToCounterMapTest

testConstructor() - Method in class com.aliasi.test.unit.util.ObjectToSetTest

testConstructorBase() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testConstructorDupDetection() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testConstructorEx1() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testConstructorEx2() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testConstructorEx3() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testConstructorEx4() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testConstructorEx5() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testConstructorExs() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testConstructorExs() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testConstructorNegDetection() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testConstrux0() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testConstruxEx1() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testConstruxEx2() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testConstruxEx3() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testConstruxExc1() - Method in class com.aliasi.test.unit.util.FastCacheTest

testConstruxExc1() - Method in class com.aliasi.test.unit.util.HardFastCacheTest

testConstruxExc2() - Method in class com.aliasi.test.unit.util.FastCacheTest

testConstruxExc2() - Method in class com.aliasi.test.unit.util.HardFastCacheTest

testConstruxNeg() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testConstruxTooBig() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testContainsChar() - Method in class com.aliasi.test.unit.util.StringsTest

testContainsDigits() - Method in class com.aliasi.test.unit.util.StringsTest

testContainsLetter() - Method in class com.aliasi.test.unit.util.StringsTest

testContext() - Method in class com.aliasi.test.unit.chunk.ChunkAndCharSeqTest

testCopyReader() - Method in class com.aliasi.test.unit.util.StreamsTest

testCopyStream() - Method in class com.aliasi.test.unit.util.StreamsTest

testCorrelation() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testCorrelationExc() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testCount() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testCountComparator() - Method in class com.aliasi.test.unit.util.ObjectToCounterMapTest

testCountComparator() - Method in class com.aliasi.test.unit.util.ObjectToDoubleMapTest

testCr() - Method in class com.aliasi.test.unit.tag.LineTaggingParserTest

testCreate() - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

testCreateAtts() - Method in class com.aliasi.test.unit.xml.SimpleElementHandlerTest

testDecodable() - Method in class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

testDecodable() - Method in class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

testDecoder() - Method in class com.aliasi.test.unit.crf.ChainCrfTest

testDecrement() - Method in class com.aliasi.test.unit.stats.MultivariateEstimatorTest

testDecrementSubstrings() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testDecrementSubstrings2() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testDecrementSubstrings3() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testDecrementSubstrings4() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testDecrementSubstrings5() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testDefectiveTags() - Method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

testDefectiveTags2() - Method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

testDefectiveTraining() - Method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

testDelta() - Method in class com.aliasi.test.unit.io.BitInputTest

testDeltaExc() - Method in class com.aliasi.test.unit.io.BitInputTest

testDeltaExceptions() - Method in class com.aliasi.test.unit.io.BitInputTest

testDeltaExceptions2() - Method in class com.aliasi.test.unit.io.BitInputTest

testDictionaryTraining() - Method in class com.aliasi.test.unit.chunk.CharLmHmmChunkerTest

testDifferent() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testDigamma() - Method in class com.aliasi.test.unit.util.MathTest

testDirDivergence() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testDirect() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testDirichlet() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testDirichletExceptions() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testDissimilarity() - Method in class com.aliasi.test.unit.dict.ApproxDictionaryChunkerTest

testDistro() - Method in class com.aliasi.test.unit.stats.ZipfDistributionTest

testDistro2() - Method in class com.aliasi.test.unit.stats.ZipfDistributionTest

testDivergenceExceptions() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testDivergences() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testDocs() - Method in class com.aliasi.test.unit.suffixarray.DocumentTokenSuffixArrayTest

testE1() - Method in class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

testE2() - Method in class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

testE3() - Method in class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

testEitherOr() - Method in class com.aliasi.test.unit.util.AbstractExternalizableTest

testElasticNet() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx1() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx2() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx3() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx4() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx5() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx6() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testElasticNetEx7() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testEmissions() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testEmpty() - Method in class com.aliasi.test.unit.suffixarray.CharSuffixArrayTest

testEmpty() - Method in class com.aliasi.test.unit.suffixarray.TokenSuffixArrayTest

testEmpty() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testEmpty() - Method in class com.aliasi.test.unit.util.TupleTest

testEmptyDictionary() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testEmptySet() - Method in class com.aliasi.test.unit.util.SmallSetTest

testEmtpySetMulti() - Method in class com.aliasi.test.unit.util.SmallSetTest

testEncodable() - Method in class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

testEncodable() - Method in class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

testEnd() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testEqualDivergences() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testEquality() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testEquals() - Method in class com.aliasi.test.unit.chunk.ChunkAndCharSeqTest

testEquals() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testEquals() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testEquals() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testEquals() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testEquals() - Method in class com.aliasi.test.unit.util.ArraysTest

testEqualsCharSeqs() - Method in class com.aliasi.test.unit.util.StringsTest

testEquivalence() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testErrorB() - Method in class com.aliasi.test.unit.util.CommaSeparatedValuesTest

testErrorC() - Method in class com.aliasi.test.unit.util.CommaSeparatedValuesTest

testEstimate() - Method in class com.aliasi.test.unit.crf.ChainCrfTest

testEstimation() - Method in class com.aliasi.test.unit.stats.LogisticRegressionTest

testEx() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testEx() - Method in class com.aliasi.test.unit.spell.TrainSpellCheckerTest

testEx1() - Method in class com.aliasi.test.unit.features.StringLengthFeatureExtractorTest

testEx1() - Method in class com.aliasi.test.unit.lm.CharSeqMultiCounterTest

testEx2() - Method in class com.aliasi.test.unit.features.StringLengthFeatureExtractorTest

testEx2() - Method in class com.aliasi.test.unit.lm.CharSeqMultiCounterTest

testEx2() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testEx3() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testEx4() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testEx5() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testExc() - Method in class com.aliasi.test.unit.dict.DictionaryEntryTest

testExc1() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testExc1() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testExc2() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testExc2() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testExc3() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testExc4() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testExc5() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testExc6() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testExcDiffLengths() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testExceptions() - Method in class com.aliasi.test.unit.sentences.AbstractSentenceModelTest

testExceptions() - Method in class com.aliasi.test.unit.stats.BinomialDistributionTest

testExceptions() - Method in class com.aliasi.test.unit.stats.PoissonConstantTest

testExceptions() - Method in class com.aliasi.test.unit.stats.PoissonDistributionTest

testExceptions1() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testExceptions2() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testExcIncrement() - Method in class com.aliasi.test.unit.classify.ConfusionMatrixTest

testExcInf() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testExcNaN() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testExcPos() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testExcThreeA() - Method in class com.aliasi.test.unit.util.IteratorsTest

testExcThreeB() - Method in class com.aliasi.test.unit.util.IteratorsTest

testExplicitCons() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testExs() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs() - Method in class com.aliasi.test.unit.lm.NGramProcessLMTest

testExs() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testExs() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testExs() - Method in class com.aliasi.test.unit.lm.UniformBoundaryLMTest

testExs() - Method in class com.aliasi.test.unit.lm.UniformProcessLMTest

testExs() - Method in class com.aliasi.test.unit.matrix.EuclideanDistanceTest

testExs() - Method in class com.aliasi.test.unit.matrix.MinkowskiDistanceTest

testExs() - Method in class com.aliasi.test.unit.matrix.ProximityMatrixTest

testExs() - Method in class com.aliasi.test.unit.matrix.TaxicabDistanceTest

testExs() - Method in class com.aliasi.test.unit.stats.MultivariateConstantTest

testExs() - Method in class com.aliasi.test.unit.stats.ZipfDistributionTest

testExs1() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs2() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs3() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs4() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs5() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs6() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExs7() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testExternalizable() - Method in class com.aliasi.test.unit.util.AbstractExternalizableTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.EnglishStopTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.LowerCaseTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.PorterStemmerTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.RegExFilteredTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.SoundexTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.StopTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.TokenLengthTokenizerFactoryTest

testFactory() - Method in class com.aliasi.test.unit.tokenizer.WhitespaceNormTokenizerFactoryTest

testFastCacheException1() - Method in class com.aliasi.test.unit.util.FastCacheTest

testFastCacheException2() - Method in class com.aliasi.test.unit.util.FastCacheTest

testFastCacheException3() - Method in class com.aliasi.test.unit.util.FastCacheTest

testFastCacheException4() - Method in class com.aliasi.test.unit.util.FastCacheTest

testFastCacheException5() - Method in class com.aliasi.test.unit.util.FastCacheTest

testFibonacci() - Method in class com.aliasi.test.unit.io.BitInputTest

testFibonacciExceptions() - Method in class com.aliasi.test.unit.io.BitInputTest

testFibonacciExcs() - Method in class com.aliasi.test.unit.io.BitInputTest

testFilePrefixes() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testFirstNames() - Method in class com.aliasi.test.unit.spell.JaroWinklerDistanceTest

testFive() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testFixed() - Method in class com.aliasi.test.unit.matrix.SvdMatrixTest

testFolds() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testFour() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testFour() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testFull() - Method in class com.aliasi.test.unit.matrix.SvdMatrixTest

testFunctionArgs() - Method in class com.aliasi.test.unit.util.StringsTest

testGamma() - Method in class com.aliasi.test.unit.io.BitInputTest

testGamma() - Method in class com.aliasi.test.unit.util.MathTest

testGammaExc() - Method in class com.aliasi.test.unit.io.BitInputTest

testGammaException() - Method in class com.aliasi.test.unit.io.BitInputTest

testGammaException2() - Method in class com.aliasi.test.unit.io.BitInputTest

testGeneChunker() - Method in class com.aliasi.test.unit.dict.ApproxDictionaryChunkerTest

testGetDefaultJavaCharset() - Method in class com.aliasi.test.unit.util.StreamsTest

testGetDouble() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testGetInt() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testGetters() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testGetters() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testGetters() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testGetters() - Method in class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

testHasArgument() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testHashCode() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testHashCode() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testHashCode() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testHashCode() - Method in class com.aliasi.test.unit.util.StringsTest

testHasProperty() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testHasZeroDiagonal() - Method in class com.aliasi.test.unit.matrix.MatricesTest

testIdf() - Method in class com.aliasi.test.unit.classify.TfIdfClassifierTrainerTest

testIgnorableWhitespace() - Method in class com.aliasi.test.unit.xml.SAXWriterTest

testIgnoreSpaces() - Method in class com.aliasi.test.unit.xml.GroupCharactersFilterTest

testIllegalA() - Method in class com.aliasi.test.unit.util.CommaSeparatedValuesTest

testIllegalChars() - Method in class com.aliasi.test.unit.xml.SAXWriterTest

testIncrement() - Method in class com.aliasi.test.unit.classify.ConfusionMatrixTest

testIncrement() - Method in class com.aliasi.test.unit.util.CounterTest

testIncrement() - Method in class com.aliasi.test.unit.util.ObjectToCounterMapTest

testIncrement() - Method in class com.aliasi.test.unit.util.ObjectToDoubleMapTest

testIncrementZeros() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testIncrementZeros() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testIndent() - Method in class com.aliasi.test.unit.util.StringsTest

testInfCatPrior() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testInfiniteMaximum() - Method in class com.aliasi.test.unit.util.MathTest

testInit() - Method in class com.aliasi.test.unit.classify.ConfusionMatrixTest

testInputsSyms() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testIsLegalUnicode() - Method in class com.aliasi.test.unit.util.StringsTest

testIsPrime() - Method in class com.aliasi.test.unit.util.MathTest

testIsPunctuation() - Method in class com.aliasi.test.unit.util.StringsTest

testIsWhitespace() - Method in class com.aliasi.test.unit.util.StringsTest

testIterability() - Method in class com.aliasi.test.unit.tokenizer.TokenizerTest

testIteratorRemoves() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testKeysOrderedByCount() - Method in class com.aliasi.test.unit.util.ObjectToCounterMapTest

testKeysOrderedByCount() - Method in class com.aliasi.test.unit.util.ObjectToDoubleMapTest

testKMeansPlusPlus() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testKnownTokenSet() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLabelsExplicit() - Method in class com.aliasi.test.unit.stats.MultivariateConstantTest

testLabelsImplicit() - Method in class com.aliasi.test.unit.stats.MultivariateConstantTest

testLargeCategorySet() - Method in class com.aliasi.test.unit.classify.DynamicLMClassifierTest

testLastNames() - Method in class com.aliasi.test.unit.spell.JaroWinklerDistanceTest

testLattice() - Method in class com.aliasi.test.unit.hmm.HmmDecoderTest

testLegalTags() - Method in class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

testLegalTags() - Method in class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

testLegalTagSubSequence() - Method in class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

testLegalTagSubSequence() - Method in class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

testLengthBound() - Method in class com.aliasi.test.unit.suffixarray.TokenSuffixArrayTest

testLengthExc1() - Method in class com.aliasi.test.unit.tag.TaggingTest

testLengthExc2() - Method in class com.aliasi.test.unit.tag.TaggingTest

testLengthNorm() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLengthNormInf() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLengthNormNeg() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLengthNormStore() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLengthNormTernary() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLengthNormZero() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testLf() - Method in class com.aliasi.test.unit.tag.LineTaggingParserTest

testLfCr() - Method in class com.aliasi.test.unit.tag.LineTaggingParserTest

testLfCrMulti() - Method in class com.aliasi.test.unit.tag.LineTaggingParserTest

testLinearProbs() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testLN_2() - Method in class com.aliasi.test.unit.util.MathTest

testLnFactorial() - Method in class com.aliasi.test.unit.util.MathTest

testLogBase2ToNaturalLog() - Method in class com.aliasi.test.unit.util.MathTest

testLogisticRegression() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testLogSumOfExponentials() - Method in class com.aliasi.test.unit.util.MathTest

testLowRoundTrips() - Method in class com.aliasi.test.unit.io.BitInputTest

testMax() - Method in class com.aliasi.test.unit.util.MathTest

testMaxF() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

testMaxLength() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testMean() - Method in class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

testMeanOffsets() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testMeans() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testMeanVarDev() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testMemberChar() - Method in class com.aliasi.test.unit.util.ArraysTest

testMemberIterator() - Method in class com.aliasi.test.unit.util.ObjectToSetTest

testMemberObject() - Method in class com.aliasi.test.unit.util.ArraysTest

testMerge() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testMergeClustersExc() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testMixed() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testMsToString() - Method in class com.aliasi.test.unit.util.StringsTest

testMulti() - Method in class com.aliasi.test.unit.util.FastCacheTest

testMulti() - Method in class com.aliasi.test.unit.util.HardFastCacheTest

testMulti() - Method in class com.aliasi.test.unit.xml.DelegatingHandlerTest

testMultipleIncrements() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testMultipleIncrements() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testMut() - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest

testMutableEntrySet() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testMutableKeySet() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testMutableValues() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testN2Minus1RoundTrips() - Method in class com.aliasi.test.unit.io.BitInputTest

testNamespaces() - Method in class com.aliasi.test.unit.xml.SAXWriterTest

testNaNCatPrior() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testNaturalToBase2() - Method in class com.aliasi.test.unit.util.MathTest

testNBest() - Method in class com.aliasi.test.unit.hmm.HmmDecoderTest

testNBest() - Method in class com.aliasi.test.unit.spell.SpellCheckerTest

testNBestChunks() - Method in class com.aliasi.test.unit.chunk.BioTagChunkCodecTest

testNBestChunks() - Method in class com.aliasi.test.unit.chunk.IoTagChunkCodecTest

testNBestFull() - Method in class com.aliasi.test.unit.hmm.HmmDecoderTest

testNeg() - Method in class com.aliasi.test.unit.classify.BinaryLMClassifierTest

testNegCatPrior() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testNegWordPrior() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testNewAndOldTerms() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testNextPrime() - Method in class com.aliasi.test.unit.util.MathTest

testNone() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testNonNegative() - Method in class com.aliasi.test.unit.matrix.MatricesTest

testNonPhrasal() - Method in class com.aliasi.test.unit.features.ChunkerFeatureExtractorTest

testNormalizeExc1() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeExc2() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeExc3() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeExc4() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeExc5() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeExc6() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeOK() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testNormalizeWhitespace() - Method in class com.aliasi.test.unit.util.StringsTest

testNormTrain() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.EnglishStopTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.LowerCaseTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.PorterStemmerTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.RegExFilteredTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.SoundexTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.StopTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.TokenLengthTokenizerFactoryTest

testNotSerializable() - Method in class com.aliasi.test.unit.tokenizer.WhitespaceNormTokenizerFactoryTest

testNotSerialize() - Method in class com.aliasi.test.unit.features.AddFeatureExtractorTest

testNullEsts() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testNulls() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testNullTF() - Method in class com.aliasi.test.unit.spell.TrainSpellCheckerTest

testNumber() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testNumSamples() - Method in class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

testOne() - Method in class com.aliasi.test.unit.chunk.TrainTokenShapeChunkerTest

testOne() - Method in class com.aliasi.test.unit.classify.BernoulliClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.BigVectorClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.BinaryLMClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.DynamicLMClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.JointClassificationTest

testOne() - Method in class com.aliasi.test.unit.classify.KnnClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.NaiveBayesClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.PerceptronClassifierTest

testOne() - Method in class com.aliasi.test.unit.classify.PrecisionRecallEvaluationTest

testOne() - Method in class com.aliasi.test.unit.classify.TfIdfClassifierTrainerTest

testOne() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testOne() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testOne() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testOne() - Method in class com.aliasi.test.unit.cluster.SingleLinkClustererTest

testOne() - Method in class com.aliasi.test.unit.coref.CachedMentionTest

testOne() - Method in class com.aliasi.test.unit.coref.EnglishMentionFactoryTest

testOne() - Method in class com.aliasi.test.unit.coref.matchers.EntityTypeMatchTest

testOne() - Method in class com.aliasi.test.unit.coref.matchers.ExactPhraseMatchTest

testOne() - Method in class com.aliasi.test.unit.coref.matchers.GenderKillerTest

testOne() - Method in class com.aliasi.test.unit.coref.matchers.HonorificConflictKillerTest

testOne() - Method in class com.aliasi.test.unit.coref.matchers.SequenceSubstringMatchTest

testOne() - Method in class com.aliasi.test.unit.coref.matchers.SynonymMatchTest

testOne() - Method in class com.aliasi.test.unit.coref.MentionChainImplTest

testOne() - Method in class com.aliasi.test.unit.coref.WithinDocCorefTest

testOne() - Method in class com.aliasi.test.unit.corpus.ListCorpusTest

testOne() - Method in class com.aliasi.test.unit.dict.DictionaryEntryTest

testOne() - Method in class com.aliasi.test.unit.dict.MapDictionaryTest

testOne() - Method in class com.aliasi.test.unit.dict.TrieDictionaryTest

testOne() - Method in class com.aliasi.test.unit.features.InteractionFeatureExtractorTest

testOne() - Method in class com.aliasi.test.unit.io.ReportersTest

testOne() - Method in class com.aliasi.test.unit.lm.CharSeqMultiCounterTest

testOne() - Method in class com.aliasi.test.unit.lm.CompiledNGramProcessLMTest

testOne() - Method in class com.aliasi.test.unit.lm.MultiTrieReaderTest

testOne() - Method in class com.aliasi.test.unit.lm.NGramProcessLMTest

testOne() - Method in class com.aliasi.test.unit.lm.PruneTrieReaderTest

testOne() - Method in class com.aliasi.test.unit.lm.ScaleTrieReaderTest

testOne() - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest

testOne() - Method in class com.aliasi.test.unit.matrix.DotProductKernelTest

testOne() - Method in class com.aliasi.test.unit.matrix.EuclideanDistanceTest

testOne() - Method in class com.aliasi.test.unit.matrix.GaussianRadialBasisKernelTest

testOne() - Method in class com.aliasi.test.unit.matrix.HyperbolicTangentKernelTest

testOne() - Method in class com.aliasi.test.unit.matrix.MinkowskiDistanceTest

testOne() - Method in class com.aliasi.test.unit.matrix.PolynomialKernelTest

testOne() - Method in class com.aliasi.test.unit.matrix.ProximityMatrixTest

testOne() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testOne() - Method in class com.aliasi.test.unit.matrix.TaxicabDistanceTest

testOne() - Method in class com.aliasi.test.unit.spell.AutoCompleterTest

testOne() - Method in class com.aliasi.test.unit.spell.EditDistanceTest

testOne() - Method in class com.aliasi.test.unit.spell.FixedWeightEditDistanceTest

testOne() - Method in class com.aliasi.test.unit.spell.TfIdfDistanceTest

testOne() - Method in class com.aliasi.test.unit.spell.WeightedEditDistanceTest

testOne() - Method in class com.aliasi.test.unit.stats.AbstractDiscreteDistributionTest

testOne() - Method in class com.aliasi.test.unit.stats.BernoulliConstantTest

testOne() - Method in class com.aliasi.test.unit.stats.BernoulliDistributionTest

testOne() - Method in class com.aliasi.test.unit.stats.BernoulliEstimatorTest

testOne() - Method in class com.aliasi.test.unit.stats.MultinomialDistributionTest

testOne() - Method in class com.aliasi.test.unit.stats.MultivariateConstantTest

testOne() - Method in class com.aliasi.test.unit.stats.MultivariateDistributionTest

testOne() - Method in class com.aliasi.test.unit.stats.MultivariateEstimatorTest

testOne() - Method in class com.aliasi.test.unit.stats.PoissonConstantTest

testOne() - Method in class com.aliasi.test.unit.stats.PoissonDistributionTest

testOne() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testOne() - Method in class com.aliasi.test.unit.tokenizer.LineTokenizerFactoryTest

testOne() - Method in class com.aliasi.test.unit.tokenizer.RegExTokenizerFactoryTest

testOne() - Method in class com.aliasi.test.unit.tokenizer.TokenFeatureExtractorTest

testOne() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testOne() - Method in class com.aliasi.test.unit.util.BoundedPriorityQueueTest

testOne() - Method in class com.aliasi.test.unit.util.FastCacheTest

testOne() - Method in class com.aliasi.test.unit.util.HardFastCacheTest

testOne() - Method in class com.aliasi.test.unit.util.IteratorsTest

testOne() - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

testOne() - Method in class com.aliasi.test.unit.util.ObjectToSetTest

testOne() - Method in class com.aliasi.test.unit.util.ShortPriorityQueueTest

testOne() - Method in class com.aliasi.test.unit.xml.DelegatingHandlerTest

testOnes() - Method in class com.aliasi.test.unit.spell.JaroWinklerDistanceTest

testOrder() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testOrdering() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testOutcomeHistograms() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testOverlap() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testOverlapOrder() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testOverlapsCase() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testPadding() - Method in class com.aliasi.test.unit.util.StringsTest

testPaddingSB() - Method in class com.aliasi.test.unit.util.StringsTest

testPair() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testPair() - Method in class com.aliasi.test.unit.util.SmallSetTest

testPartial() - Method in class com.aliasi.test.unit.matrix.SvdMatrixTest

testPartition() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testPartition() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPartitionByMax() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPartitionDistanceLeaf() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPartitionDistanceLink() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPartitionExc1() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPartitionExc2() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPartitionExc3() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testPermutation() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testPermute() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testPermute() - Method in class com.aliasi.test.unit.util.ArraysTest

testPhrasal() - Method in class com.aliasi.test.unit.features.ChunkerFeatureExtractorTest

testPositions() - Method in class com.aliasi.test.unit.tokenizer.CharacterTokenizerFactoryTest

testPositions() - Method in class com.aliasi.test.unit.tokenizer.RegExTokenizerFactoryTest

testPower() - Method in class com.aliasi.test.unit.util.StringsTest

testPowers() - Method in class com.aliasi.test.unit.io.BitOutputTest

testPrecisionAtN() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

testPrecisionAtNExc() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

testPriceIsRight2() - Method in class com.aliasi.test.unit.suffixarray.DocumentTokenSuffixArrayTest

testPriceIsRightEmpty() - Method in class com.aliasi.test.unit.suffixarray.DocumentTokenSuffixArrayTest

testProbability() - Method in class com.aliasi.test.unit.stats.BinomialDistributionTest

testProbCat() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testProbCatUnknownCatExc() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testProbCatUnknownCatExcSerDeser() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testProbs() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testProcess() - Method in class com.aliasi.test.unit.lm.UniformProcessLMTest

testPrune() - Method in class com.aliasi.test.unit.util.FastCacheTest

testPrune() - Method in class com.aliasi.test.unit.util.HardFastCacheTest

testPrune() - Method in class com.aliasi.test.unit.util.ObjectToCounterMapTest

testPruneCount() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruneCount2() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruneCount3() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruneCount4() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruneCount5() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruneCount6() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruneCount7() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testPruning1() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testPruning2() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testQuoted() - Method in class com.aliasi.test.unit.util.CommaSeparatedValuesTest

testRandom() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testRandom() - Method in class com.aliasi.test.unit.util.ShortPriorityQueueTest

testRandomRecluster() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testRandomRoundTrips() - Method in class com.aliasi.test.unit.io.BitInputTest

testRange1() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange10() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange11() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange12() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange13() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange14() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange15() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange16() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange17() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange2() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange3() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange4() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange5() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange6() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange7() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange8() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRange9() - Method in class com.aliasi.test.unit.crf.ForwardBackwardTagLatticeTest

testRangeExc() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testRangeExc2() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testReadWrite() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testReallocate() - Method in class com.aliasi.test.unit.util.ArraysTest

testReciprocalRank() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

testRecover() - Method in class com.aliasi.test.unit.util.FastCacheTest

testRecover() - Method in class com.aliasi.test.unit.util.HardFastCacheTest

testRegression() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegression2() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions1() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions2() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions3() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions4() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions5() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions6() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRegressionExceptions7() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testRemove() - Method in class com.aliasi.test.unit.util.BoundedPriorityQueueTest

testRemove() - Method in class com.aliasi.test.unit.util.IteratorsTest

testRemove() - Method in class com.aliasi.test.unit.util.ObjectToSetTest

testRemove() - Method in class com.aliasi.test.unit.util.ShortPriorityQueueTest

testRemove2() - Method in class com.aliasi.test.unit.util.ObjectToSetTest

testReturns() - Method in class com.aliasi.test.unit.sentences.AbstractSentenceModelTest

testReverse() - Method in class com.aliasi.test.unit.util.StringsTest

testReversed() - Method in class com.aliasi.test.unit.lm.CharSeqMultiCounterTest

testRice() - Method in class com.aliasi.test.unit.io.BitInputTest

testRice2() - Method in class com.aliasi.test.unit.io.BitInputTest

testRice2Exc() - Method in class com.aliasi.test.unit.io.BitInputTest

testRice3() - Method in class com.aliasi.test.unit.io.BitInputTest

testRice3Exc() - Method in class com.aliasi.test.unit.io.BitInputTest

testRiceExc() - Method in class com.aliasi.test.unit.io.BitInputTest

testRiceExceptions() - Method in class com.aliasi.test.unit.io.BitInputTest

testRiceExceptions2() - Method in class com.aliasi.test.unit.io.BitInputTest

testRiceExceptions3() - Method in class com.aliasi.test.unit.io.BitInputTest

testRowVectors() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testRPrecision() - Method in class com.aliasi.test.unit.classify.ScoredPrecisionRecallEvaluationTest

testSampling() - Method in class com.aliasi.test.unit.stats.StatisticsTest

testScaling1() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testScaling2() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testScaling3() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testScore() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testScoredObjects() - Method in class com.aliasi.test.unit.util.ObjectToDoubleMapTest

testSentenceChunks() - Method in class com.aliasi.test.unit.sentences.SentenceChunkerTest

testSeq() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testSequence() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testSer() - Method in class com.aliasi.test.unit.classify.BernoulliClassifierTest

testSerializable() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testSerializable() - Method in class com.aliasi.test.unit.lm.UniformBoundaryLMTest

testSerializable() - Method in class com.aliasi.test.unit.lm.UniformProcessLMTest

testSerializable() - Method in class com.aliasi.test.unit.sentences.IndoEuropeanSentenceModelTest

testSerializable() - Method in class com.aliasi.test.unit.sentences.MedlineSentenceModelTest

testSerializable() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testSerializable() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testSerialization() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testSerialization() - Method in class com.aliasi.test.unit.stats.RegressionPriorTest

testSerialization() - Method in class com.aliasi.test.unit.tokenizer.CharacterTokenizerFactoryTest

testSerialization() - Method in class com.aliasi.test.unit.tokenizer.IndoEuropeanTokenizerFactoryTest

testSerialize() - Method in class com.aliasi.test.unit.dict.TrieDictionaryTest

testSerialize() - Method in class com.aliasi.test.unit.features.AddFeatureExtractorTest

testSerialize() - Method in class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

testSerialize() - Method in class com.aliasi.test.unit.features.CacheFeatureExtractorTest

testSerialize() - Method in class com.aliasi.test.unit.features.KnownFeatureExtractorTest

testSerialize() - Method in class com.aliasi.test.unit.features.LengthNormFeatureExtractorTest

testSerialize() - Method in class com.aliasi.test.unit.features.ZScoreFeatureExtractorTest

testSerialize() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testSerialize() - Method in class com.aliasi.test.unit.spell.TrainSpellCheckerTest

testSerialize() - Method in class com.aliasi.test.unit.util.FastCacheTest

testSerializer() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testSet() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testSet() - Method in class com.aliasi.test.unit.util.CounterTest

testSet() - Method in class com.aliasi.test.unit.util.ObjectToCounterMapTest

testSet() - Method in class com.aliasi.test.unit.util.ObjectToDoubleMapTest

testSetFoldExc1() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testSetFoldExc2() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testSetHandler() - Method in class com.aliasi.test.unit.xml.SAXFilterHandlerTest

testSetLengthNorm() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testSetLengthNormInfExc() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testSetLengthNormInfExc2() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testSetLengthNormNegExc() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testSetLengthNormNegExc2() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testSetNumFoldsExc() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testSharedPrefixLength() - Method in class com.aliasi.test.unit.util.StringsTest

testShortToken() - Method in class com.aliasi.test.unit.spell.CompiledSpellCheckerTest

testShortTokenMidQuery() - Method in class com.aliasi.test.unit.spell.CompiledSpellCheckerTest

testSIFive() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSIFour() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSim() - Method in class com.aliasi.test.unit.dca.DiscreteChooserTest

testSim() - Method in class com.aliasi.test.unit.dca.DiscreteObjectChooserTest

testSimilarity() - Method in class com.aliasi.test.unit.dict.ApproxDictionaryChunkerTest

testSimp() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

testSimple() - Method in class com.aliasi.test.unit.suffixarray.DocumentTokenSuffixArrayTest

testSimpleElement() - Method in class com.aliasi.test.unit.xml.SimpleElementHandlerTest

testSimpleEsts() - Method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

testSingleElementAtts() - Method in class com.aliasi.test.unit.xml.SimpleElementHandlerTest

testSingleton() - Method in class com.aliasi.test.unit.tokenizer.LineTokenizerFactoryTest

testSingleton() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testSingleton() - Method in class com.aliasi.test.unit.util.SmallSetTest

testSIOne() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSIOneB() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSIOneC() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSISix() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSIThree() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSITwo() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSITwoB() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSix() - Method in class com.aliasi.test.unit.cluster.CompleteLinkClustererTest

testSize() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSize() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testSize2() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSize3() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeB() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeB2() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeB3() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeC() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeC2() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeC3() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeC4() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeC5() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeCOrder() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeD() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSized() - Method in class com.aliasi.test.unit.matrix.DenseMatrixTest

testSized() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testSizeD2() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeD3() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeD4() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeD5() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeDOrder() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeDTolerance() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSizeZero() - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

testSkip() - Method in class com.aliasi.test.unit.io.BitInputTest

testSkipExc() - Method in class com.aliasi.test.unit.io.BitInputTest

testSlExc1() - Method in class com.aliasi.test.unit.cluster.SingleLinkClustererTest

testSlExc2() - Method in class com.aliasi.test.unit.cluster.SingleLinkClustererTest

testSliceIteratorA() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSliceIteratorB() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSliceIteratorC() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSliceIteratorD() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSliceIteratorE() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSliceIteratorF() - Method in class com.aliasi.test.unit.util.IteratorsTest

testSort() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSortScale() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testSoundex() - Method in class com.aliasi.test.unit.tokenizer.SoundexTokenizerFactoryTest

testSplit() - Method in class com.aliasi.test.unit.util.StringsTest

testStandard() - Method in class com.aliasi.test.unit.cluster.ClusterScoreTest

testStart() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testStartEnd() - Method in class com.aliasi.test.unit.tokenizer.NGramTokenizerFactoryTest

testStartEnd() - Method in class com.aliasi.test.unit.tokenizer.PorterStemmerTokenizerFactoryTest

testStateExc1() - Method in class com.aliasi.test.unit.stats.PoissonEstimatorTest

testStateExc2() - Method in class com.aliasi.test.unit.stats.PoissonEstimatorTest

testStaticConstruction() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testStaticDuplicateException() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testStaticFactoryOrder() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testStaticImmutableException1() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testStaticImmutableException2() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testStaticImmutableException3() - Method in class com.aliasi.test.unit.symbol.SymbolTableCompilerTest

testStats() - Method in class com.aliasi.test.unit.classify.ConfusionMatrixTest

testSymmetric() - Method in class com.aliasi.test.unit.matrix.MatricesTest

testTextPositions() - Method in class com.aliasi.test.unit.util.StringsTest

testTf() - Method in class com.aliasi.test.unit.classify.TfIdfClassifierTrainerTest

testTfIdf() - Method in class com.aliasi.test.unit.classify.TfIdfClassifierTrainerTest

testThree() - Method in class com.aliasi.test.unit.classify.BinaryLMClassifierTest

testThree() - Method in class com.aliasi.test.unit.classify.KnnClassifierTest

testThree() - Method in class com.aliasi.test.unit.classify.PrecisionRecallEvaluationTest

testThree() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testThree() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testThree() - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

testThrow() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testThrow1() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testThrow2() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testThrow2() - Method in class com.aliasi.test.unit.chunk.ChunkingImplTest

testThrowConstructor() - Method in class com.aliasi.test.unit.chunk.ChunkAndCharSeqTest

testThrowContext() - Method in class com.aliasi.test.unit.chunk.ChunkAndCharSeqTest

testTitleCase() - Method in class com.aliasi.test.unit.util.StringsTest

testToCharArray() - Method in class com.aliasi.test.unit.util.StreamsTest

testTokenize() - Method in class com.aliasi.test.unit.tokenizer.CharacterTokenizerFactoryTest

testTokenizer() - Method in class com.aliasi.test.unit.spell.SpellCheckerTest

testTokenSensitivity() - Method in class com.aliasi.test.unit.dict.ExactDictionaryChunkerTest

testToks() - Method in class com.aliasi.test.unit.tokenizer.TokenizationTest

testTolerance() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testToleranceB() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testToleranceB2() - Method in class com.aliasi.test.unit.classify.ConditionalClassificationTest

testTopicSampler() - Method in class com.aliasi.test.unit.cluster.LatentDirichletAllocationTest

testToString() - Method in class com.aliasi.test.unit.io.LogLevelTest

testToString() - Method in class com.aliasi.test.unit.util.CounterTest

testTrain() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testTrain() - Method in class com.aliasi.test.unit.spell.SpellCheckerTest

testTrainConditional() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testTrainSequence() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testTransitions() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testTransitions2() - Method in class com.aliasi.test.unit.hmm.HmmCharLmEstimatorTest

testTriple() - Method in class com.aliasi.test.unit.util.SmallSetTest

testTwo() - Method in class com.aliasi.test.unit.classify.BinaryLMClassifierTest

testTwo() - Method in class com.aliasi.test.unit.classify.JointClassificationTest

testTwo() - Method in class com.aliasi.test.unit.classify.KnnClassifierTest

testTwo() - Method in class com.aliasi.test.unit.classify.PrecisionRecallEvaluationTest

testTwo() - Method in class com.aliasi.test.unit.cluster.DendrogramTest

testTwo() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testTwo() - Method in class com.aliasi.test.unit.coref.matchers.SynonymMatchTest

testTwo() - Method in class com.aliasi.test.unit.coref.WithinDocCorefTest

testTwo() - Method in class com.aliasi.test.unit.features.InteractionFeatureExtractorTest

testTwo() - Method in class com.aliasi.test.unit.io.ReportersTest

testTwo() - Method in class com.aliasi.test.unit.lm.MultiTrieReaderTest

testTwo() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testTwo() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testTwo() - Method in class com.aliasi.test.unit.spell.CompiledSpellCheckerTest

testTwo() - Method in class com.aliasi.test.unit.stats.MultinomialDistributionTest

testTwo() - Method in class com.aliasi.test.unit.symbol.MapSymbolTableTest

testTwo() - Method in class com.aliasi.test.unit.util.AbstractCommandTest

testTwo() - Method in class com.aliasi.test.unit.util.IteratorsTest

testTwo() - Method in class com.aliasi.test.unit.util.MinMaxHeapTest

testType() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testTypeScore() - Method in class com.aliasi.test.unit.chunk.ChunkFactoryTest

testUnary() - Method in class com.aliasi.test.unit.io.BitInputTest

testUnary2() - Method in class com.aliasi.test.unit.io.BitInputTest

testUnaryBig() - Method in class com.aliasi.test.unit.io.BitInputTest

testUnaryExceptions() - Method in class com.aliasi.test.unit.io.BitInputTest

testUnexpected() - Method in class com.aliasi.test.unit.util.CommaSeparatedValuesTest

testUnhandle() - Method in class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

testUnigram() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testUnion(SmallSet, SmallSet, SmallSet) - Method in class com.aliasi.test.unit.util.SmallSetTest

testUniqueTotals() - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

testUnknownCatTrainException() - Method in class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

testUnquoted() - Method in class com.aliasi.test.unit.util.CommaSeparatedValuesTest

testUnSerialize() - Method in class com.aliasi.test.unit.features.BoundedFeatureExtractorTest

testUnSerialize() - Method in class com.aliasi.test.unit.features.CacheFeatureExtractorTest

testUnSerialize() - Method in class com.aliasi.test.unit.features.KnownFeatureExtractorTest

testUnSerialize() - Method in class com.aliasi.test.unit.features.LengthNormFeatureExtractorTest

testUnSerialize() - Method in class com.aliasi.test.unit.features.ZScoreFeatureExtractorTest

testUnsupExc() - Method in class com.aliasi.test.unit.classify.BinaryLMClassifierTest

testUnsupported() - Method in class com.aliasi.test.unit.util.ShortPriorityQueueTest

testUnsuppSetKey() - Method in class com.aliasi.test.unit.util.BinaryMapTest

testUTF8IsSupported() - Method in class com.aliasi.test.unit.util.StringsTest

testVariance() - Method in class com.aliasi.test.unit.stats.OnlineNormalEstimatorTest

testVectorOps() - Method in class com.aliasi.test.unit.matrix.DenseVectorTest

testView() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testViewEx1() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testViewEx2() - Method in class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

testXHTML() - Method in class com.aliasi.test.unit.xml.SAXWriterTest

testZandP() - Method in class com.aliasi.test.unit.stats.BinomialDistributionTest

testZero() - Method in class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

testZero() - Method in class com.aliasi.test.unit.matrix.SparseFloatVectorTest

testZero() - Method in class com.aliasi.test.unit.stats.ZipfDistributionTest

testZeroExc1() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testZeroExc2() - Method in class com.aliasi.test.unit.cluster.KMeansClustererTest

testZeroGram() - Method in class com.aliasi.test.unit.lm.TokenizedLMTest

testZeros() - Method in class com.aliasi.test.unit.features.ZScoreFeatureExtractorTest

testZeroSet() - Method in class com.aliasi.test.unit.util.ObjectToDoubleMapTest

testZeroSize() - Method in class com.aliasi.test.unit.util.CompactHashSetTest

text() - Method in class com.aliasi.suffixarray.CharSuffixArray

Returns the underlying array of characters for this class.

text() - Method in class com.aliasi.tokenizer.Tokenization

Return the underlying text for this tokenization.

TEXT_ORDER_COMPARATOR - Static variable in interface com.aliasi.chunk.Chunk

Compares two chunks based on their text position.

TextAccumulatorHandler - Class in com.aliasi.xml

A TextAccumulatorHandler simply accumulates all text content events into a single string buffer.

TextAccumulatorHandler() - Constructor for class com.aliasi.xml.TextAccumulatorHandler

Construct a text accumulator handler.

TextAccumulatorHandler(int) - Constructor for class com.aliasi.xml.TextAccumulatorHandler

Construct a text accumulator handler with the specified initial buffer length.

TEXTAREA - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element textarea.

textarea() - Method in class com.aliasi.xml.XHtmlWriter

Start an textarea element with no attributes.

textarea(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an textarea element with the specified attributes.

textarea(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an textarea element with the specified attribute and value.

textarea(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an textarea element with the specified attributes and values.

textarea(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an textarea element with the specified attributes and values.

textarea(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an textarea element with the specified attributes and values.

textConstructException1() - Method in class com.aliasi.test.unit.tokenizer.TokenLengthTokenizerFactoryTest

textConstructException2() - Method in class com.aliasi.test.unit.tokenizer.TokenLengthTokenizerFactoryTest

TextContentFilter - Class in com.aliasi.xml

A filter that applies an operation to text content in specified elements.

TextContentFilter(DefaultHandler) - Constructor for class com.aliasi.xml.TextContentFilter

Construct a text content filter which passes events to the specified handler.

TextContentFilter() - Constructor for class com.aliasi.xml.TextContentFilter

Construct a text content filter without a specified contained handler.

TextContentFilterTest - Class in com.aliasi.test.unit.xml

TextContentFilterTest() - Constructor for class com.aliasi.test.unit.xml.TextContentFilterTest

textPositions(CharSequence) - Static method in class com.aliasi.util.Strings

Return a displayable version of the character sequence, followed by integer positions at various powers of 10.

textPositionToDocId(int) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray

Return the identifier of the document that contains the specified position in the underlying text.

tf(String, String) - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Rerturn the term frequency for the specified feature in the specified category.

tfIdf(String, String) - Method in class com.aliasi.classify.TfIdfClassifierTrainer

Return the TF/IDF score for the specified feature and category.

TfIdfClassifierTrainer<E> - Class in com.aliasi.classify

A TfIdfClassifierTrainer provides a framework for training discriminative classifiers based on term-frequency (TF) and inverse document frequency (IDF) weighting of features.

TfIdfClassifierTrainer(FeatureExtractor<? super E>) - Constructor for class com.aliasi.classify.TfIdfClassifierTrainer

Construct a TF/IDF classifier trainer based on the specified feature extractor.

TfIdfClassifierTrainerTest - Class in com.aliasi.test.unit.classify

TfIdfClassifierTrainerTest() - Constructor for class com.aliasi.test.unit.classify.TfIdfClassifierTrainerTest

TfIdfDistance - Class in com.aliasi.spell

The TfIdfDistance class provides a string distance based on term frequency (TF) and inverse document frequency (IDF).

TfIdfDistance(TokenizerFactory) - Constructor for class com.aliasi.spell.TfIdfDistance

Construct an instance of TF/IDF string distance based on the specified tokenizer factory.

TfIdfDistanceTest - Class in com.aliasi.test.unit.spell

TfIdfDistanceTest() - Constructor for class com.aliasi.test.unit.spell.TfIdfDistanceTest

TFOOT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element tfoot.

tfoot() - Method in class com.aliasi.xml.XHtmlWriter

Start an tfoot element with no attributes.

tfoot(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an tfoot element with the specified attributes.

tfoot(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tfoot element with the specified attribute and value.

tfoot(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tfoot element with the specified attributes and values.

tfoot(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tfoot element with the specified attributes and values.

tfoot(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tfoot element with the specified attributes and values.

TH - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element th.

th() - Method in class com.aliasi.xml.XHtmlWriter

Start an th element with no attributes.

th(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an th element with the specified attributes.

th(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an th element with the specified attribute and value.

th(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an th element with the specified attributes and values.

th(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an th element with the specified attributes and values.

th(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an th element with the specified attributes and values.

THEAD - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element thead.

thead() - Method in class com.aliasi.xml.XHtmlWriter

Start an thead element with no attributes.

thead(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an thead element with the specified attributes.

thead(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an thead element with the specified attribute and value.

thead(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an thead element with the specified attributes and values.

thead(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an thead element with the specified attributes and values.

thead(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an thead element with the specified attributes and values.

TITLE - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element title.

title() - Method in class com.aliasi.xml.XHtmlWriter

Start an title element with no attributes.

title(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an title element with the specified attributes.

title(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an title element with the specified attribute and value.

title(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an title element with the specified attributes and values.

title(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an title element with the specified attributes and values.

title(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an title element with the specified attributes and values.

TITLE_ATT - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the title attribute.

titleCase(String) - Static method in class com.aliasi.util.Strings

Returns a title-cased version of the specified word, which involves capitalizing the first character in the word if it is a letter.

toArray(Vector) - Static method in class com.aliasi.matrix.Matrices

Returns the content of the specified vector as an array.

toArray(CharSequence) - Static method in class com.aliasi.util.Arrays

Converts the specified character sequence to an array of characters.

toArray() - Method in class com.aliasi.util.CompactHashSet

Returns an object array containing all of the members of this set.

toArray(T[]) - Method in class com.aliasi.util.CompactHashSet

Returns an array of elements contained in this set, the runtime type of which is that of the specified array argument.

toByteArray(InputStream) - Static method in class com.aliasi.util.Streams

Returns all the bytes read from the specified input stream as an array.

toCharArray(Reader) - Static method in class com.aliasi.util.Streams

Reads the full contents of the specified reader and returns it as a character array.

toCharArray(InputStream, String) - Static method in class com.aliasi.util.Streams

Reads the full contents of the specified input stream and returns the characters determined by the specified character set.

toCharArray(InputSource) - Static method in class com.aliasi.util.Streams

Reads the character content from the specified input source and returns it as a character array.

toCharArray(CharSequence) - Static method in class com.aliasi.util.Strings

Returns an array of characters corresponding to the specified character sequence.

toChunking(StringTagging) - Method in class com.aliasi.chunk.BioTagChunkCodec

toChunking(StringTagging) - Method in class com.aliasi.chunk.IoTagChunkCodec

toChunking(StringTagging) - Method in interface com.aliasi.chunk.TagChunkCodec

Return the result of decoding the specified tagging into a chunking.

toFile(File, String) - Method in class com.aliasi.util.CommaSeparatedValues

Write this comma-separated values object to the specified file using the specified charset.

toIllegalArgument(String, Throwable) - Static method in class com.aliasi.util.Exceptions

Convert the specified throwable to an illegal argument exception.

toIO(String, Throwable) - Static method in class com.aliasi.util.Exceptions

Convert the specified throwable to an I/O exception.

token(int) - Method in class com.aliasi.crf.ChainCrfFeatures

Return the token at the specified input position.

token(int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice

token(int) - Method in class com.aliasi.tag.Tagging

Return the token in the specified position for this tagging.

token(int) - Method in class com.aliasi.tag.TagLattice

Return the token at the specified position in the input.

token(int) - Method in class com.aliasi.tokenizer.Tokenization

Return the token at the specified input position.

TokenCategorizer - Interface in com.aliasi.tokenizer

A TokenCategorizer supplies a string-based category for string-based tokens.

TokenChunker - Class in com.aliasi.tokenizer

A TokenChunker provides an implementationg of the Chunker interface based on an underlying tokenizer factory.

TokenChunker(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.TokenChunker

Construct a chunker from the specified tokenizer factory.

TokenChunkerTest - Class in com.aliasi.test.unit.tokenizer

TokenChunkerTest() - Constructor for class com.aliasi.test.unit.tokenizer.TokenChunkerTest

tokenClassification(int) - Method in class com.aliasi.tag.TagLattice

Returns the classification of the token at the specified position in this tag lattice.

tokenCounter() - Method in class com.aliasi.spell.TrainSpellChecker

Returns the counter for the tokens in the training set.

tokenEnd(int) - Method in class com.aliasi.tag.StringTagging

Return the character offset of the end of the token in the specified input position in the underlying characters.

tokenEnd(int) - Method in class com.aliasi.tokenizer.Tokenization

Return the position of one past the last character in the specified input position.

tokenEval() - Method in class com.aliasi.tag.TaggerEvaluator

Returns the token-level evaluation for this tag evaluator.

TokenFeatureExtractor - Class in com.aliasi.tokenizer

A TokenFeatureExtractor produces feature vectors from character sequences representing token counts.

TokenFeatureExtractor(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.TokenFeatureExtractor

Construct a token-based feature extractor from the specified tokenizer factory.

TokenFeatureExtractorTest - Class in com.aliasi.test.unit.tokenizer

TokenFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.tokenizer.TokenFeatureExtractorTest

tokenization() - Method in class com.aliasi.suffixarray.TokenSuffixArray

Returns the tokenization underlying this suffix array.

Tokenization - Class in com.aliasi.tokenizer

A Tokenization represents the result of tokenizing a string.

Tokenization(char[], int, int, TokenizerFactory) - Constructor for class com.aliasi.tokenizer.Tokenization

Construct a tokenization from the specified text and tokenizer factory.

Tokenization(String, TokenizerFactory) - Constructor for class com.aliasi.tokenizer.Tokenization

Construct a tokenization from the specified text and tokenizer factory.

Tokenization(String, List<String>, List<String>, int[], int[]) - Constructor for class com.aliasi.tokenizer.Tokenization

Construct a tokenization from the specified components.

TokenizationTest - Class in com.aliasi.test.unit.tokenizer

TokenizationTest() - Constructor for class com.aliasi.test.unit.tokenizer.TokenizationTest

tokenize(List<? super String>, List<? super String>) - Method in class com.aliasi.tokenizer.Tokenizer

Adds the remaining tokens and whitespaces to the specified lists.

tokenize() - Method in class com.aliasi.tokenizer.Tokenizer

Returns the remaining tokens in an array of strings.

TokenizedDistance - Class in com.aliasi.spell

The TokenizedDistance class provides an underlying implementation of string distance based on comparing sets of tokens.

TokenizedDistance(TokenizerFactory) - Constructor for class com.aliasi.spell.TokenizedDistance

Construct a tokenized distance from the specified tokenizer factory.

TokenizedLM - Class in com.aliasi.lm

A TokenizedLM provides a dynamic sequence language model which models token sequences with an n-gram model, and whitespace and unknown tokens with their own sequence language models.

TokenizedLM(TokenizerFactory, int) - Constructor for class com.aliasi.lm.TokenizedLM

Constructs a tokenized language model with the specified tokenization factory and n-gram order (see warnings below on where this simple constructor may be used).

TokenizedLM(TokenizerFactory, int, LanguageModel.Sequence, LanguageModel.Sequence, double) - Constructor for class com.aliasi.lm.TokenizedLM

Construct a tokenized language model with the specified tokenization factory and n-gram order, sequence models for unknown tokens and whitespace, and an interpolation hyperparameter.

TokenizedLM(TokenizerFactory, int, LanguageModel.Sequence, LanguageModel.Sequence, double, boolean) - Constructor for class com.aliasi.lm.TokenizedLM

Construct a tokenized language model with the specified tokenization factory and n-gram order, sequence models for unknown tokens and whitespace, and an interpolation hyperparameter, as well as a flag indicating whether to automatically increment a null input to avoid numerical problems with zero counts.

TokenizedLMTest - Class in com.aliasi.test.unit.lm

TokenizedLMTest() - Constructor for class com.aliasi.test.unit.lm.TokenizedLMTest

tokenizeDocument(CharSequence, TokenizerFactory, SymbolTable) - Static method in class com.aliasi.cluster.LatentDirichletAllocation

Tokenizes the specified text document using the specified tokenizer factory returning only tokens that exist in the symbol table.

tokenizeDocuments(CharSequence[], TokenizerFactory, SymbolTable, int) - Static method in class com.aliasi.cluster.LatentDirichletAllocation

Tokenize an array of text documents represented as character sequences into a form usable by LDA, using the specified tokenizer factory and symbol table.

tokenizer(char[], int, int) - Method in class com.aliasi.test.unit.tokenizer.ConstantTokenizerFactory

tokenizer(char[], int, int) - Method in class com.aliasi.tokenizer.CharacterTokenizerFactory

Returns a character tokenizer for the specified character array slice.

tokenizer(char[], int, int) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory

Returns a tokenizer for Indo-European for the specified subsequence of characters.

tokenizer(char[], int, int) - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory

Return the tokenizer for the specified character array slice, which is generated by the base tokenizer and modified with the modify method.

tokenizer(char[], int, int) - Method in class com.aliasi.tokenizer.NGramTokenizerFactory

Returns an n-gram tokenizer for the specified characters with the minimum and maximum n-gram lengths as specified in the constructor.

tokenizer(char[], int, int) - Method in class com.aliasi.tokenizer.RegExTokenizerFactory

Tokenizer - Class in com.aliasi.tokenizer

The abstract class Tokenizer serves as a base for tokenizer implementations, which provide streams of tokens, whitespaces, and positions.

Tokenizer() - Constructor for class com.aliasi.tokenizer.Tokenizer

Construct a tokenizer.

tokenizer(char[], int, int) - Method in interface com.aliasi.tokenizer.TokenizerFactory

Returns a tokenizer for the specified subsequence of characters.

tokenizer(char[], int, int) - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory

tokenizerFactory() - Method in class com.aliasi.crf.ChainCrfChunker

Return the tokenizer factory for this chunker.

tokenizerFactory() - Method in class com.aliasi.dict.ApproxDictionaryChunker

Returns the tokenizer factory for matching with this chunker.

tokenizerFactory() - Method in class com.aliasi.dict.ExactDictionaryChunker

Returns the tokenizer factory underlying this chunker.

tokenizerFactory() - Method in class com.aliasi.lm.TokenizedLM

Returns the tokenizer factory for this tokenized language model.

tokenizerFactory() - Method in class com.aliasi.sentences.SentenceChunker

Returns the tokenizer factory for this chunker.

tokenizerFactory() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns the tokenizer factory for this spell checker.

tokenizerFactory() - Method in class com.aliasi.spell.TokenizedDistance

Return the tokenizer factory for this tokenized distance.

tokenizerFactory() - Method in class com.aliasi.tokenizer.TokenChunker

Return the tokenizer factory for this token chunker.

TokenizerFactory - Interface in com.aliasi.tokenizer

A TokenizerFactory constructors tokenizers from subsequences of character arrays.

TokenizerTest - Class in com.aliasi.test.unit.tokenizer

TokenizerTest() - Constructor for class com.aliasi.test.unit.tokenizer.TokenizerTest

TOKENIZING - Static variable in class com.aliasi.spell.CompiledSpellChecker

A weighted edit distance ordered by similarity that allows free space insertion.

TokenLengthTokenizerFactory - Class in com.aliasi.tokenizer

A TokenLengthTokenizerFactory filters the tokenizers produced by a base tokenizer to only return tokens between specified lower and upper length limits.

TokenLengthTokenizerFactory(TokenizerFactory, int, int) - Constructor for class com.aliasi.tokenizer.TokenLengthTokenizerFactory

Construct a token-length filtered tokenizer factory from the specified factory that removes tokens shorter than the shortest or longer than the longest length.

TokenLengthTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

TokenLengthTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.TokenLengthTokenizerFactoryTest

tokenList() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

tokenList() - Method in class com.aliasi.tag.TagLattice

Return an unmodifiable view of the underlying tokens for this tag lattice.

tokenList() - Method in class com.aliasi.tokenizer.Tokenization

Returns an unmodifiable view of the list of tokens for this tokenization.

tokenLog2Probability(String[], int, int) - Method in class com.aliasi.lm.CompiledTokenizedLM

tokenLog2Probability(String[], int, int) - Method in interface com.aliasi.lm.LanguageModel.Tokenized

Returns the log (base 2) probability of the specified token slice in the underlying token n-gram distribution.

tokenLog2Probability(String[], int, int) - Method in class com.aliasi.lm.TokenizedLM

TokenNGramTokenizerFactory - Class in com.aliasi.tokenizer

A TokenNGramTokenizerFactory wraps a base tokenizer to produce token n-gram tokens of a specified size.

TokenNGramTokenizerFactory(TokenizerFactory, int, int) - Constructor for class com.aliasi.tokenizer.TokenNGramTokenizerFactory

Construct a token n-gram tokenizer factory using the specified base factory that produces n-grams within the specified minimum and maximum length bounds.

TokenNGramTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

TokenNGramTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.TokenNGramTokenizerFactoryTest

tokenProbability(String[], int, int) - Method in class com.aliasi.lm.CompiledTokenizedLM

tokenProbability(String[], int, int) - Method in interface com.aliasi.lm.LanguageModel.Tokenized

Returns the probability of the specified token slice in the token n-gram distribution.

tokenProbability(String[], int, int) - Method in class com.aliasi.lm.TokenizedLM

tokens() - Method in class com.aliasi.tag.Tagging

Return an immutable view of the tokens for this tagging.

tokens() - Method in class com.aliasi.tokenizer.Tokenization

Returns the array of tokens underlying this tokenization.

tokenSet() - Method in class com.aliasi.spell.CompiledSpellChecker

Returns an unmodifiable view the set of tokens for this spell checker.

tokenSet(CharSequence) - Method in class com.aliasi.spell.TokenizedDistance

Return the set of tokens produced by the specified character sequence using the tokenizer for this distance measure.

tokenSet(char[], int, int) - Method in class com.aliasi.spell.TokenizedDistance

Return the set of tokens produced by the specified character slice using the tokenizer for this distance measure.

TokenShapeChunker - Class in com.aliasi.chunk

A TokenShapeChunker uses a named-entity TokenShapeDecoder and tokenizer factory to implement entity detection through the chunk.Chunker interface.

tokenStart(int) - Method in class com.aliasi.tag.StringTagging

Return the character offfset of the start of the token in the specified input position in the underlying characters.

tokenStart(int) - Method in class com.aliasi.tokenizer.Tokenization

Return the position of the first character in the specified input position.

TokenSuffixArray - Class in com.aliasi.suffixarray

A TokenSuffixArray implements a suffix array of tokens.

TokenSuffixArray(Tokenization) - Constructor for class com.aliasi.suffixarray.TokenSuffixArray

Construct at token suffix array with no limit on suffix length and the default document-boundary token.

TokenSuffixArray(Tokenization, int) - Constructor for class com.aliasi.suffixarray.TokenSuffixArray

Construct a suffix array from the specified tokenization, comparing suffixes using up the specified maximum suffix length using the default document-boundary token.

TokenSuffixArray(Tokenization, int, String) - Constructor for class com.aliasi.suffixarray.TokenSuffixArray

Construct a suffix array from the specified tokenization, comparing suffixes using up the specified maximum suffix length using the default document-boundary token.

TokenSuffixArrayTest - Class in com.aliasi.test.unit.suffixarray

TokenSuffixArrayTest() - Constructor for class com.aliasi.test.unit.suffixarray.TokenSuffixArrayTest

topicCount(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the total number of tokens assigned to the specified topic in this sample.

topicSample(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the topic identifier sampled for the specified token position in the specified document.

topicWordCount(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of times tokens for the specified word were assigned to the specified topic.

topicWordPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the uniform Dirichlet concentration hyperparameter β for topic distributions over words from which this sample was produced.

topicWordProb(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the probability estimate for the specified word in the specified topic in this sample.

topNGrams(int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns a counter of occurrences of the highest frequency n-grams of a specified n-gram order.

toReader(TrieCharSeqCounter) - Method in class com.aliasi.test.unit.lm.MultiTrieReaderTest

toStream(OutputStream, String) - Method in class com.aliasi.util.CommaSeparatedValues

Write this comma-separated values object to the specified output stream using the specified charset.

toString() - Method in class com.aliasi.chunk.BioTagChunkCodec

Return a string-based representation of this codec.

toString() - Method in class com.aliasi.chunk.CharLmHmmChunker

Returns a string representation of the complete topology of the underlying HMM with log2 transition probabilities.

toString() - Method in class com.aliasi.chunk.ChunkAndCharSeq

Returns a string-based representation of this chunk and character sequence.

toString() - Method in class com.aliasi.chunk.ChunkerEvaluator

Returns a string-based representation of this evaluation.

toString() - Method in class com.aliasi.chunk.ChunkingEvaluation

Returns the precision-recall evaluation for this chunking as a string.

toString() - Method in class com.aliasi.chunk.ChunkingImpl

Returns a string-based representation of this chunking.

toString() - Method in class com.aliasi.chunk.IoTagChunkCodec

Return a string-based representation of this codec.

toString() - Method in class com.aliasi.classify.BaseClassifierEvaluator

Return a string-based representation of the results of the evaluation.

toString() - Method in class com.aliasi.classify.Classification

Returns a string-based representation of the first-best category of this classification.

toString() - Method in class com.aliasi.classify.Classified

Returns a string-based representation of the classified object and best category.

toString() - Method in class com.aliasi.classify.ConditionalClassification

Returns a string-based representation of this conditional probability ranked classification.

toString() - Method in class com.aliasi.classify.ConfusionMatrix

Return a string-based representation of this confusion matrix.

toString() - Method in class com.aliasi.classify.JointClassification

Returns a string-based representation of this joint probability ranked classification.

toString() - Method in class com.aliasi.classify.LogisticRegressionClassifier

Returns a string-based representation of this classifier, listing the parameter vectors for each category.

toString() - Method in class com.aliasi.classify.PerceptronClassifier

Returns a string-based representation of this perceptron.

toString() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns a string-based representation of this evaluation.

toString() - Method in class com.aliasi.classify.RankedClassification

Returns a string-based representation of this ranked classification.

toString() - Method in class com.aliasi.classify.ScoredClassification

Returns a string-based representation of this scored classification.

toString() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation

Returns a string-based representation of this scored precision recall evaluation.

toString() - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Return a string representation of this classifier.

toString() - Method in class com.aliasi.cluster.ClusterScore

Returns a string representation of the statistics for this score.

toString() - Method in class com.aliasi.cluster.Dendrogram

Returns a string-based representation of this dendrogram.

toString() - Method in class com.aliasi.coref.AbstractMentionChain

Returns a string representation of this mention chain.

toString() - Method in class com.aliasi.coref.CachedMention

Returns a string-based representation of this mention.

toString() - Method in class com.aliasi.crf.ChainCrf

Return a string-based representation of this chain CRF.

toString() - Method in class com.aliasi.crf.ChainCrfChunker

Return a string-based representation of this CRF chunker.

toString() - Method in class com.aliasi.crf.ForwardBackwardTagLattice

Return a string-based representation of this tag lattice.

toString() - Method in class com.aliasi.dca.DiscreteChooser

Return a string-based representation of the coefficient vector underlying this discrete chooser.

toString() - Method in class com.aliasi.dict.DictionaryEntry

Returns a string-based representation of this entry.

toString() - Method in class com.aliasi.dict.ExactDictionaryChunker

Returns a string-based representation of this chunker.

toString() - Method in class com.aliasi.features.ZScoreFeatureExtractor

Returns a string representation of this z-score feature extractor, listing the mean and deviation for each feature.

toString() - Method in class com.aliasi.lm.CompiledNGramProcessLM

Returns a string-based representation of this compiled n-gram.

toString() - Method in class com.aliasi.lm.CompiledTokenizedLM

Returns a string-based representation of this compiled language model.

toString() - Method in class com.aliasi.lm.NGramBoundaryLM

Returns a string-based representation of this language model.

toString() - Method in class com.aliasi.lm.NGramProcessLM

Returns a string-based representation of this language model.

toString() - Method in class com.aliasi.lm.TokenizedLM

Returns a string-based representation of the token counts for this language model.

toString() - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns a string representation of the trie structure of counts underlying this counter.

toString() - Method in class com.aliasi.lm.TrieIntSeqCounter

Return a string-based representation of this integer sequence counter.

toString() - Method in class com.aliasi.matrix.DenseVector

Returns a string representation of the values in this vector.

toString() - Method in class com.aliasi.matrix.DotProductKernel

Returns a string-based representation of this kernel.

toString() - Method in class com.aliasi.matrix.GaussianRadialBasisKernel

Returns a string-based representation of this kernel function, including the kernel type and radius.

toString() - Method in class com.aliasi.matrix.HyperbolicTangentKernel

Returns a string-based representation of this kernel function, including the offset and slope parameters.

toString() - Method in class com.aliasi.matrix.PolynomialKernel

Returns a string-based representation of this kernel function, including the kernel type and degree.

toString() - Method in class com.aliasi.matrix.SparseFloatVector

toString() - Method in class com.aliasi.spell.EditDistance

Returns a string representation of this edit distance.

toString() - Method in class com.aliasi.spell.FixedWeightEditDistance

Returns a string-based representation of this fixed-weight edit distance's parameters.

toString() - Method in class com.aliasi.spell.SpellEvaluator

Return a string-based representation of the current status of this evaluation.

toString() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns a string-based representation of the mean and standard deviation and number of samples for this estimator.

toString() - Method in class com.aliasi.symbol.MapSymbolTable

Returns a string-based representation of this symbol table by printing the underlying identifier to symbol mapping.

toString() - Method in class com.aliasi.symbol.SymbolTableCompiler

Returns a string-based representation of this symbol table.

toString() - Method in class com.aliasi.tag.ScoredTagging

Returns a string-based representation of this scored tagging.

toString() - Method in class com.aliasi.tag.StringTagging

toString() - Method in class com.aliasi.tag.Tagging

Return a string-based representation of this tagging.

toString(Attributes) - Static method in class com.aliasi.test.unit.xml.MockDefaultHandler

toString() - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer

Returns the name of this class.

toString() - Method in class com.aliasi.tokenizer.CharacterTokenizerFactory

Returns a string representation of this tokenizer factory, which is just its name.

toString() - Method in class com.aliasi.tokenizer.EnglishStopTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory

Returns tha name of this class.

toString() - Method in class com.aliasi.tokenizer.LineTokenizerFactory

Returns a string representation of this factory, consisting of its name.

toString() - Method in class com.aliasi.tokenizer.LowerCaseTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.NGramTokenizerFactory

Returns a description of this n-gram tokenizer factory, including minimum and maximum token lengths.

toString() - Method in class com.aliasi.tokenizer.PorterStemmerTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.RegExFilteredTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.RegExTokenizerFactory

Return a description of this regex-based tokenizer factory including its pattern's regular expression and flags.

toString() - Method in class com.aliasi.tokenizer.SoundexTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.StopTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.TokenFeatureExtractor

Returns a description of this token feature extractor including its contained tokenizer factory.

toString() - Method in class com.aliasi.tokenizer.TokenLengthTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory

toString() - Method in class com.aliasi.tokenizer.WhitespaceNormTokenizerFactory

toString() - Method in class com.aliasi.util.CommaSeparatedValues

Returns a string-based representation of this comma-separated values object.

toString() - Method in class com.aliasi.util.Counter

Return a string representation of this counter's value.

toString() - Method in class com.aliasi.util.MinMaxHeap

Returns a string-based representation of this heap.

toString() - Method in class com.aliasi.util.ObjectToCounterMap

Returns a string representation of this map.

toString() - Method in class com.aliasi.util.Pair

Returns a string representation of this pair, including the results of converting each of its components to a string.

toString() - Method in class com.aliasi.util.ScoredObject

Returns a string-based representation of this object consisting of the score followed by a colon (':'), followed by the object converted to a string.

toString() - Method in class com.aliasi.util.ShortPriorityQueue

Returns a string-based representation of the elements in this queue.

toString() - Method in class com.aliasi.xml.TextAccumulatorHandler

A convenience implementation returning the same value as getText(), namely the text thus far accumulated.

toStringTagging(Chunking) - Method in class com.aliasi.chunk.BioTagChunkCodec

toStringTagging(Chunking) - Method in class com.aliasi.chunk.IoTagChunkCodec

toStringTagging(Chunking) - Method in interface com.aliasi.chunk.TagChunkCodec

Return the string tagging that fully encodes the specified chunking.

toTagging(Chunking) - Method in class com.aliasi.chunk.BioTagChunkCodec

toTagging(Chunking) - Method in class com.aliasi.chunk.IoTagChunkCodec

toTagging(Chunking) - Method in interface com.aliasi.chunk.TagChunkCodec

Return the tagging that partially encodes the specified chunking.

total() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the total number of cases.

totalAccuracy() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the percentage of response that are correct.

totalCorrect() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the total number of responses that matched the reference.

totalCount() - Method in class com.aliasi.classify.ConfusionMatrix

Returns the total number of classifications.

totalSequenceCount() - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the sum of counts for all non-empty character sequences.

totalSequenceCount(int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the sum of the counts of all character sequences of the specified length.

toVector(Map<String, ? extends Number>, SymbolTable, int, boolean) - Static method in class com.aliasi.features.Features

Convert the specified feature vector into a sparse float vector using the specified symbol table to encode features as integers.

toVectorAddSymbols(Map<String, ? extends Number>, SymbolTable, int, boolean) - Static method in class com.aliasi.features.Features

Convert the specified feature vector into a sparse float vector using the specified symbol table to encode features as integers, adding features to the symbol table if necessary.

toWriter(Writer) - Method in class com.aliasi.util.CommaSeparatedValues

Write this comma-separated values object to the specified writer.

TR - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element tr.

tr() - Method in class com.aliasi.xml.XHtmlWriter

Start an tr element with no attributes.

tr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an tr element with the specified attributes.

tr(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tr element with the specified attribute and value.

tr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tr element with the specified attributes and values.

tr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tr element with the specified attributes and values.

tr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tr element with the specified attributes and values.

trace(String) - Method in class com.aliasi.io.Reporter

Utility method for trace-level reports.

TradNaiveBayesClassifier - Class in com.aliasi.classify

A TradNaiveBayesClassifier implements a traditional token-based approach to naive Bayes text classification.

TradNaiveBayesClassifier(Set<String>, TokenizerFactory) - Constructor for class com.aliasi.classify.TradNaiveBayesClassifier

Constructs a naive Bayes classifier over the specified categories, using the specified tokenizer factory.

TradNaiveBayesClassifier(Set<String>, TokenizerFactory, double, double, double) - Constructor for class com.aliasi.classify.TradNaiveBayesClassifier

Constructs a naive Bayes classifier over the specified categories, using the specified tokenizer factory, priors and length normalization.

TradNaiveBayesClassifierTest - Class in com.aliasi.test.unit.classify

TradNaiveBayesClassifierTest() - Constructor for class com.aliasi.test.unit.classify.TradNaiveBayesClassifierTest

train(String, CharSequence, int) - Method in class com.aliasi.classify.DynamicLMClassifier

Provide a training instance for the specified category consisting of the specified sample character sequence with the specified count.

train(Corpus<ObjectHandler<Classified<F>>>, FeatureExtractor<? super F>, int, boolean, RegressionPrior, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.classify.LogisticRegressionClassifier

Returns a trained logistic regression classifier given the specified feature extractor, training corpus, model priors and search parameters.

train(Corpus<ObjectHandler<Classified<F>>>, FeatureExtractor<? super F>, int, boolean, RegressionPrior, int, LogisticRegressionClassifier<F>, AnnealingSchedule, double, int, int, int, ObjectHandler<LogisticRegressionClassifier<F>>, Reporter) - Static method in class com.aliasi.classify.LogisticRegressionClassifier

Returns a trained logistic regression classifier given the specified feature extractor, training corpus, model priors and search parameters.

train(CharSequence, Classification, double) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Trains the classifier with the specified case consisting of a character sequence and conditional classification with the specified count.

train(CharSequence) - Method in interface com.aliasi.lm.LanguageModel.Dynamic

Update the model with the training data provided by the specified character sequence with a count of one.

train(CharSequence, int) - Method in interface com.aliasi.lm.LanguageModel.Dynamic

Update the model with the training data provided by the specified character sequence with the specified count.

train(char[], int, int) - Method in interface com.aliasi.lm.LanguageModel.Dynamic

Update the model with the training data provided by the specified character slice.

train(char[], int, int, int) - Method in interface com.aliasi.lm.LanguageModel.Dynamic

Update the model with the training data provided by the specified character sequence with the specifiedc count.

train(CharSequence, int) - Method in class com.aliasi.lm.NGramBoundaryLM

train(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM

train(char[], int, int) - Method in class com.aliasi.lm.NGramBoundaryLM

train(char[], int, int, int) - Method in class com.aliasi.lm.NGramBoundaryLM

train(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM

train(CharSequence, int) - Method in class com.aliasi.lm.NGramProcessLM

train(char[], int, int) - Method in class com.aliasi.lm.NGramProcessLM

train(char[], int, int, int) - Method in class com.aliasi.lm.NGramProcessLM

train(CharSequence) - Method in class com.aliasi.lm.TokenizedLM

Trains the token sequence model, whitespace model (if dynamic) and unknown token model (if dynamic).

train(CharSequence, int) - Method in class com.aliasi.lm.TokenizedLM

Trains the token sequence model, whitespace model (if dynamic) and unknown token model (if dynamic) with the specified count number of instances.

train(char[], int, int) - Method in class com.aliasi.lm.TokenizedLM

Trains the token sequence model, whitespace model (if dynamic) and unknown token model (if dynamic).

train(char[], int, int, int) - Method in class com.aliasi.lm.TokenizedLM

Trains the token sequence model, whitespace model (if dynamic) and unknown token model (if dynamic).

train(char[], int, int) - Method in class com.aliasi.lm.UniformBoundaryLM

Ignores the training data.

train(char[], int, int, int) - Method in class com.aliasi.lm.UniformBoundaryLM

Ignores the training data.

train(CharSequence) - Method in class com.aliasi.lm.UniformBoundaryLM

Ignores the training data.

train(CharSequence, int) - Method in class com.aliasi.lm.UniformBoundaryLM

Ignores the training data.

train(char[], int, int) - Method in class com.aliasi.lm.UniformProcessLM

Ignores the training data.

train(char[], int, int, int) - Method in class com.aliasi.lm.UniformProcessLM

Ignores the training data.

train(CharSequence) - Method in class com.aliasi.lm.UniformProcessLM

Ignores the training data.

train(CharSequence, int) - Method in class com.aliasi.lm.UniformProcessLM

Ignores the training data.

train(CharSequence, int) - Method in class com.aliasi.spell.TrainSpellChecker

Train the spelling checker on the specified character sequence as if it had appeared with a frequency given by the specified count.

train(boolean, int) - Method in class com.aliasi.stats.BernoulliEstimator

Train this estimator with the specified number of samples for success or failure as specified.

train(boolean) - Method in class com.aliasi.stats.BernoulliEstimator

Trains the estimator with one sample that is specified as a success or failure.

train(String, long) - Method in class com.aliasi.stats.MultivariateEstimator

Increment counts in this estimator for the specified outcome by the specified increment.

train(long) - Method in class com.aliasi.stats.PoissonEstimator

Add the specified sample to the collection of training data.

train(long, double) - Method in class com.aliasi.stats.PoissonEstimator

Add the specified sample to the collection of training data with the specified weight.

trainCases() - Method in class com.aliasi.corpus.ListCorpus

Returns an unmodifiable view of the list of training cases underlying this corpus.

trainConditional(CharSequence, ConditionalClassification, double, double) - Method in class com.aliasi.classify.TradNaiveBayesClassifier

Trains this classifier using tokens extracted from the specified character sequence, using category count multipliers derived by multiplying the specified count multiplier by the conditional probablity of a category in the specified classification.

trainConditional(char[], int, int, int) - Method in class com.aliasi.lm.NGramProcessLM

Trains the specified conditional outcome(s) of the specified character slice given the background slice.

trainDictionary(CharSequence, String) - Method in class com.aliasi.chunk.CharLmHmmChunker

Train the underlying hidden Markov model based on the specified character sequence being of the specified type.

trainDictionary(CharSequence, String) - Method in class com.aliasi.chunk.CharLmRescoringChunker

Provides the specified character sequence data as training data for the language model of the specfied type.

trainEmit(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmmEstimator

Train the emission estimator with the specified training instance consisting of a state and emission.

trainEmit(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator

trainEnd(String) - Method in class com.aliasi.hmm.AbstractHmmEstimator

Train the end state estimator with the specified end state.

trainEnd(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

trainingSampleCount() - Method in class com.aliasi.stats.MultivariateEstimator

Returns the total count of training sample.

trainOut(CharSequence) - Method in class com.aliasi.chunk.CharLmRescoringChunker

Trains the language model for non-entities using the specified character sequence.

trainSequence(CharSequence, int) - Method in class com.aliasi.lm.TokenizedLM

This method increments the count of the entire sequence specified.

TrainSpellChecker - Class in com.aliasi.spell

A TrainSpellChecker instance provides a mechanism for collecting training data for a compiled spell checker.

TrainSpellChecker(NGramProcessLM, WeightedEditDistance) - Constructor for class com.aliasi.spell.TrainSpellChecker

Construct a non-tokenizing spell checker trainer from the specified language model and edit distance.

TrainSpellChecker(NGramProcessLM, WeightedEditDistance, TokenizerFactory) - Constructor for class com.aliasi.spell.TrainSpellChecker

Construct a spell checker trainer from the specified n-gram process language model, tokenizer factory and edit distance.

TrainSpellCheckerTest - Class in com.aliasi.test.unit.spell

TrainSpellCheckerTest() - Constructor for class com.aliasi.test.unit.spell.TrainSpellCheckerTest

trainStart(String) - Method in class com.aliasi.hmm.AbstractHmmEstimator

Train the start state estimator with the specified start state.

trainStart(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

TrainTokenShapeChunker - Class in com.aliasi.chunk

A TrainTokenShapeChunker is used to train a token and shape-based chunker.

TrainTokenShapeChunker(TokenCategorizer, TokenizerFactory) - Constructor for class com.aliasi.chunk.TrainTokenShapeChunker

Construct a trainer for a token/shape chunker based on the specified token categorizer and tokenizer factory.

TrainTokenShapeChunker(TokenCategorizer, TokenizerFactory, int, int, int) - Constructor for class com.aliasi.chunk.TrainTokenShapeChunker

Construct a trainer for a token/shape chunker based on the specified token categorizer, tokenizer factory and numerical parameters.

TrainTokenShapeChunkerTest - Class in com.aliasi.test.unit.chunk

TrainTokenShapeChunkerTest() - Constructor for class com.aliasi.test.unit.chunk.TrainTokenShapeChunkerTest

trainTransit(String, String) - Method in class com.aliasi.hmm.AbstractHmmEstimator

Trains the transition estimator from the specified transition from the specified source state to the specified target state.

trainTransit(String, String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

transform(String) - Method in class com.aliasi.test.unit.tokenizer.ConstantTokenizerFactory

transitLog2Prob(String, String) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) estimate of a transition probability.

transitLog2Prob(int, int) - Method in class com.aliasi.hmm.AbstractHmm

Returns the log (base 2) of the transition estimate.

transitLog2Prob(int, int) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) of the transition estimate.

transitLog2Prob(String, String) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns the log (base 2) estimate of a transition probability.

transitProb(String, String) - Method in class com.aliasi.hmm.AbstractHmm

Returns an estimate of a transition from the source state with the specified name to the target state with the specified label.

transitProb(int, int) - Method in class com.aliasi.hmm.AbstractHmm

Return an estimate of the transition likelihood from the source state with the specified identifier to the target state with the specified identifier.

transitProb(int, int) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Return an estimate of the transition likelihood from the source state with the specified identifier to the target state with the specified identifier.

transitProb(String, String) - Method in interface com.aliasi.hmm.HiddenMarkovModel

Returns an estimate of a transition from the source state with the specified name to the target state with the specified label.

transitProb(String, String) - Method in class com.aliasi.hmm.HmmCharLmEstimator

Returns the transition estimate from the specified source state to the specified target state.

transposeWeight(char, char) - Method in class com.aliasi.spell.FixedWeightEditDistance

Returns the constant weight of transposing the specified characters.

transposeWeight(char, char) - Method in class com.aliasi.spell.WeightedEditDistance

Returns the weight of transposing the specified characters.

TRANSPOSING - Static variable in class com.aliasi.spell.EditDistance

Edit distance allowing transposition.

TrieCharSeqCounter - Class in com.aliasi.lm

A TrieCharSeqCounter stores counts for substrings of strings.

TrieCharSeqCounter(int) - Constructor for class com.aliasi.lm.TrieCharSeqCounter

Construct a substring counter that stores substrings up to the specified maximum length.

TrieCharSeqCounterTest - Class in com.aliasi.test.unit.lm

TrieCharSeqCounterTest() - Constructor for class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

TrieDictionary<C> - Class in com.aliasi.dict

A TrieDictionary stores a dictionary using a character trie structure.

TrieDictionary() - Constructor for class com.aliasi.dict.TrieDictionary

Construct a trie-based dictionary.

TrieDictionaryTest - Class in com.aliasi.test.unit.dict

TrieDictionaryTest() - Constructor for class com.aliasi.test.unit.dict.TrieDictionaryTest

TrieIntSeqCounter - Class in com.aliasi.lm

An TrieIntSeqCounter implements an integer sequence counter with a trie structure of counts.

TrieIntSeqCounter(int) - Constructor for class com.aliasi.lm.TrieIntSeqCounter

Construct an integer sequence counter for subsequences up to the specified maximum length.

TrieIntSeqCounterTest - Class in com.aliasi.test.unit.lm

TrieIntSeqCounterTest() - Constructor for class com.aliasi.test.unit.lm.TrieIntSeqCounterTest

TrieReader - Interface in com.aliasi.lm

The TrieReader interface provides a means to read a trie structure with counts.

trieSize() - Method in class com.aliasi.lm.TrieIntSeqCounter

Returns the size of this graph, measured in number of nodes in the trie structure.

TrieWriter - Interface in com.aliasi.lm

The TrieWriter interface provides a means to write an arbitrary trie structure with positive node counts.

trueNegative() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of true negative cases.

trueNegatives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the list of true negative cases along with their classifications for items of the specified category.

truePositive() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Returns the number of true positive cases.

truePositiveEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation

Return the set of chunks and character sequences whose end boundaries are in both the reference and response.

truePositives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator

Returns the list of true positive cases along with their classifications for items of the specified category.

truePositives() - Method in class com.aliasi.cluster.ClusterScore

Returns the set of true positive relations for this scoring.

truePositiveSet() - Method in class com.aliasi.chunk.ChunkingEvaluation

Returns the set of true positives.

TT - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element tt.

tt() - Method in class com.aliasi.xml.XHtmlWriter

Start an tt element with no attributes.

tt(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an tt element with the specified attributes.

tt(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tt element with the specified attribute and value.

tt(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tt element with the specified attributes and values.

tt(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tt element with the specified attributes and values.

tt(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an tt element with the specified attributes and values.

TT_DISTANCE - Static variable in class com.aliasi.dict.ApproxDictionaryChunker

This is a weighted edit distance defined by Tsuruoka and Tsujii for matching protein names in biomedical texts.

Tuple<E> - Class in com.aliasi.util

A tuple is an immutable ordered list of objects or null values with equality conditions determined pointwise.

TupleTest - Class in com.aliasi.test.unit.util

TupleTest() - Constructor for class com.aliasi.test.unit.util.TupleTest

type() - Method in interface com.aliasi.chunk.Chunk

Returns the type of this chunk.

TYPE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the type attribute.

typeToChar(String) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker

Returns the character used to encode the specified type in the model.

U

U - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element u.

u() - Method in class com.aliasi.xml.XHtmlWriter

Start an u element with no attributes.

u(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an u element with the specified attributes.

u(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an u element with the specified attribute and value.

u(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an u element with the specified attributes and values.

u(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an u element with the specified attributes and values.

u(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an u element with the specified attributes and values.

UL - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element ul.

ul() - Method in class com.aliasi.xml.XHtmlWriter

Start an ul element with no attributes.

ul(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an ul element with the specified attributes.

ul(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ul element with the specified attribute and value.

ul(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ul element with the specified attributes and values.

ul(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ul element with the specified attributes and values.

ul(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an ul element with the specified attributes and values.

unHandle(double) - Method in class com.aliasi.stats.OnlineNormalEstimator

Removes the specified value from the sample set.

UniformBoundaryLM - Class in com.aliasi.lm

A UniformBoundaryLM implements a uniform sequence language model with a specified number of outcomes and the same probability assigned to the end-of-stream marker.

UniformBoundaryLM() - Constructor for class com.aliasi.lm.UniformBoundaryLM

Construct uniform boundary language model with the full set of characters.

UniformBoundaryLM(int) - Constructor for class com.aliasi.lm.UniformBoundaryLM

Construct a uniform boundary language model with the specified number of outcomes.

UniformBoundaryLM(double) - Constructor for class com.aliasi.lm.UniformBoundaryLM

Create a constant uniform boundary LM with the specified character cross-entropy rate.

UniformBoundaryLMTest - Class in com.aliasi.test.unit.lm

UniformBoundaryLMTest() - Constructor for class com.aliasi.test.unit.lm.UniformBoundaryLMTest

UniformProcessLM - Class in com.aliasi.lm

A UniformLM.Sequence implements a uniform sequence language model with a specified number of outcomes and the same probability assigned to the end-of-stream marker.

UniformProcessLM() - Constructor for class com.aliasi.lm.UniformProcessLM

Construct a uniform process language model with a number of outcomes equal to the total number of characters.

UniformProcessLM(int) - Constructor for class com.aliasi.lm.UniformProcessLM

Construct a uniform process language model with the specified number of outcomes.

UniformProcessLM(double) - Constructor for class com.aliasi.lm.UniformProcessLM

Construct a uniform process language model with the specified character cross-entropy rate.

UniformProcessLMTest - Class in com.aliasi.test.unit.lm

UniformProcessLMTest() - Constructor for class com.aliasi.test.unit.lm.UniformProcessLMTest

union(SmallSet<? extends E>) - Method in class com.aliasi.util.SmallSet

Returns the union of this set with the specified set, without modifying either this set or the specified set.

uniqueSequenceCount() - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the number of character sequences with non-zero counts, including the empty (zero length) character sequence.

uniqueSequenceCount(int) - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the number of character sequences of the specified length with non-zero counts.

uniqueTotalNGramCount() - Method in class com.aliasi.lm.TrieCharSeqCounter

Returns the array of unique and total n-gram counts for each n-gram length.

UNKNOWN_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer

The unknown category for tokens not one character long.

UNKNOWN_SYMBOL_ID - Static variable in interface com.aliasi.symbol.SymbolTable

The value returned for a symbol that is not in the symbol table, namely -1.

UNKNOWN_TOKEN - Static variable in class com.aliasi.lm.TokenizedLM

The symbol used for unknown symbol IDs.

unknownTokenEval(Set<E>) - Method in class com.aliasi.tag.TaggerEvaluator

Return the accuracy over known token set as an instance of a classifier evaluator whose cases are individual tokens not in the specified known token set.

unknownTokenLM() - Method in class com.aliasi.lm.TokenizedLM

Returns the unknown token seqeunce language model for this tokenized language model.

unmodifiable(Iterator<E>) - Static method in class com.aliasi.util.Iterators

Returns an unmodifiable view of the specified iterator.

unmodifiableVector(Vector) - Static method in class com.aliasi.matrix.Matrices

Returns an unmodifiable view of the specified vector.

unmodifiableView(SymbolTable) - Static method in class com.aliasi.symbol.MapSymbolTable

Returns a view of the specified symbol table that cannot be modified.

unparsedEntityDecl(String, String, String, String) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

unparsedEntityDecl(String, String, String, String) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

unparsedEntityDecl(String, String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

update(int, double) - Method in class com.aliasi.stats.PotentialScaleReduction

Provide a sample of the specified value from the specified chain.

USEMAP - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the usemap attribute.

userCorrectSystemNoSuggestion() - Method in class com.aliasi.spell.SpellEvaluator

Returns an array of cases for which the user was correct and the system made no suggestions.

userCorrectSystemWrongSuggestion() - Method in class com.aliasi.spell.SpellEvaluator

Returns an array of cases for which the user was correct and the system made an erroneous suggestion.

userErrorSystemCorrect() - Method in class com.aliasi.spell.SpellEvaluator

Returns an array of cases for which the user made an error and system returned the appropriate correction.

userErrorSystemNoSuggestion() - Method in class com.aliasi.spell.SpellEvaluator

Returns an array of cases for which the user made an error and the systme made no suggestion.

userErrorSystemWrongSuggestion() - Method in class com.aliasi.spell.SpellEvaluator

Returns an array of cases for which the user made an error and system returned the appropriate correction.

UTF8 - Static variable in class com.aliasi.util.Strings

String representing the UTF-8 encoding for characters.

V

VALIGN - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the valign attribute.

value(int, int) - Method in class com.aliasi.matrix.AbstractMatrix

value(int) - Method in class com.aliasi.matrix.AbstractVector

The value of this vector for the specified dimension.

value(int, int) - Method in class com.aliasi.matrix.DenseMatrix

value(int) - Method in class com.aliasi.matrix.DenseVector

Returns the value of this dense vector for the specified dimension.

value(int, int) - Method in interface com.aliasi.matrix.Matrix

Returns the value in the matrix at the specified row and column.

value(int, int) - Method in class com.aliasi.matrix.ProximityMatrix

Returns the value in this proximity matrix for the specified row and column.

value(int) - Method in class com.aliasi.matrix.SparseFloatVector

value(int, int) - Method in class com.aliasi.matrix.SvdMatrix

Returns the value of this matrix at the specified row and column.

value(int) - Method in interface com.aliasi.matrix.Vector

Returns the value of this vector for the specified dimension.

value(int) - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.MutVect

value(int) - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.Vector1

value(int) - Method in class com.aliasi.test.unit.matrix.AbstractVectorTest.Vector2

value() - Method in class com.aliasi.util.Counter

Returns the current count value.

VALUE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the value attribute.

valueComparator() - Method in class com.aliasi.util.ObjectToDoubleMap

Returns the comparator that compares objects based on their values.

valueOf(String) - Static method in enum com.aliasi.io.LogLevel

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.aliasi.io.LogLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Method in class com.aliasi.util.BinaryMap

Returns an immutable collection view of the values for this map.

VALUETYPE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the valuetype attribute.

VAR - Static variable in class com.aliasi.xml.XHtmlWriter

Constant for element var.

var() - Method in class com.aliasi.xml.XHtmlWriter

Start an var element with no attributes.

var(Attributes) - Method in class com.aliasi.xml.XHtmlWriter

Start an var element with the specified attributes.

var(String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an var element with the specified attribute and value.

var(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an var element with the specified attributes and values.

var(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an var element with the specified attributes and values.

var(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter

Start an var element with the specified attributes and values.

variance() - Method in class com.aliasi.stats.AbstractDiscreteDistribution

Returns the variance of this distribution.

variance() - Method in class com.aliasi.stats.BernoulliDistribution

Returns the variance of this Bernoulli distribution.

variance() - Method in class com.aliasi.stats.BinomialDistribution

Returns the variance of this binomial distribution.

variance() - Method in interface com.aliasi.stats.DiscreteDistribution

Returns the variance of this distribution.

variance() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns the maximum likelihood estimate of the variance of the samples.

variance() - Method in class com.aliasi.stats.PoissonDistribution

Returns the variance of this Poisson distribution, which is equal to the mean.

variance(double[]) - Static method in class com.aliasi.stats.Statistics

Returns the variance of the specified array of input values.

varianceUnbiased() - Method in class com.aliasi.stats.OnlineNormalEstimator

Returns the unbiased estimate of the variance of the samples.

Vector - Interface in com.aliasi.matrix

A Vector represents an n-dimensional value.

verifyBounds(String[], String[], int, int) - Static method in class com.aliasi.sentences.AbstractSentenceModel

Throws an illegal argument exception if the arrays of tokens is not as long as the start plus length, or if the array of whitespaces is not at least one element longer than the start plus length.

verifyTokensWhitespaces(String[], String[]) - Static method in class com.aliasi.sentences.AbstractSentenceModel

Throws an illegal argument exception if the array of whitespaces is not one longer than the array of tokens.

visitCorpus(H) - Method in class com.aliasi.corpus.Corpus

Visit the entire corpus, sending all extracted events to the specified handler.

visitCorpus(H, H) - Method in class com.aliasi.corpus.Corpus

Visit the entire corpus, first sending training events to the specified training handler and then sending testing events to the test handler.

visitCorpus(ObjectHandler<E>) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

visitCorpus(ObjectHandler<E>, ObjectHandler<E>) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

visitTest(H) - Method in class com.aliasi.corpus.Corpus

Visit the testing section of the corpus, sending events to the specified handler.

visitTest(H) - Method in class com.aliasi.corpus.DiskCorpus

Visit the testing data, sending extracted events to the specified handler.

visitTest(ObjectHandler<E>) - Method in class com.aliasi.corpus.ListCorpus

visitTest(ObjectHandler<E>) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Send all of the test items to the specified handler.

visitTest(ObjectHandler<E>, int) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Visit the test portion of the specified fold with the specified handler.

visitTrain(H) - Method in class com.aliasi.corpus.Corpus

Visit the training section of the corpus, sending events to the specified handler.

visitTrain(H) - Method in class com.aliasi.corpus.DiskCorpus

Visit the training data, sending extracted events to the specified handler.

visitTrain(ObjectHandler<E>) - Method in class com.aliasi.corpus.ListCorpus

visitTrain(ObjectHandler<E>) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Send all of the training items to the specified handler.

visitTrain(ObjectHandler<E>, int) - Method in class com.aliasi.corpus.XValidatingObjectCorpus

Visit the training portion of the specified fold with the specified handler.

W

warn(String) - Method in class com.aliasi.io.Reporter

Utility method for warn-level reports.

warning(SAXParseException) - Method in class com.aliasi.test.unit.xml.MockDefaultHandler

warning(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler

Call delegated.

warning(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler

Call delegated to SAXFilterHandler.mHandler.

weightByProximity() - Method in class com.aliasi.classify.KnnClassifier

Returns true if resposes are weighted by proximity.

WeightedEditDistance - Class in com.aliasi.spell

The WeightedEditDistance class implements both the proximity and distance interfaces based on the negative proximity weights assigned to independent atomic edit operations.

WeightedEditDistance() - Constructor for class com.aliasi.spell.WeightedEditDistance

Construct a weighted edit distance.

WeightedEditDistanceTest - Class in com.aliasi.test.unit.spell

WeightedEditDistanceTest() - Constructor for class com.aliasi.test.unit.spell.WeightedEditDistanceTest

weightVectors() - Method in class com.aliasi.stats.LogisticRegression

Returns an array of views of the weight vectors used for this regression model.

whitespace(int) - Method in class com.aliasi.tokenizer.Tokenization

Return the whitespace before the token at the specified input position, or the last whitespace if the specified position is the number of tokens.

whitespaceList() - Method in class com.aliasi.tokenizer.Tokenization

Returns an unmodifiable view of the list of whitespaces for this tokenization.

whitespaceLM() - Method in class com.aliasi.lm.TokenizedLM

Returns the whitespace language model for this tokenized language model.

WhitespaceNormTokenizerFactory - Class in com.aliasi.tokenizer

A WhitespaceNormTokenizerFactory filters the tokenizers produced by a base tokenizer factory to convert non-empty whitespaces to a single space and leave empty (zero-length) whitespaces alone.

WhitespaceNormTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.WhitespaceNormTokenizerFactory

Construct a whitespace normalizing tokenizer factory from the specified base factory.

WhitespaceNormTokenizerFactoryTest - Class in com.aliasi.test.unit.tokenizer

WhitespaceNormTokenizerFactoryTest() - Constructor for class com.aliasi.test.unit.tokenizer.WhitespaceNormTokenizerFactoryTest

whitespaces() - Method in class com.aliasi.tokenizer.Tokenization

Return the array of whitespaces for this tokenization.

WIDTH - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the width attribute.

withinClusterScatter(Set<? extends Set<? extends E>>, Distance<? super E>) - Static method in class com.aliasi.cluster.ClusterScore

Returns the within-cluster scatter measure for the specified clustering with respect to the specified distance.

withinClusterScatter(int, Distance<? super E>) - Method in class com.aliasi.cluster.Dendrogram

Returns the within-cluster scatter relative to the specified distance of the clustering determined by splitting this dendrogram into the specified number of clusters.

WithinDocCoref - Class in com.aliasi.coref

A WithinDocCoref object handles resolution of coreference relations between mentions of entities.

WithinDocCoref(MentionFactory) - Constructor for class com.aliasi.coref.WithinDocCoref

Construct an instance of within-document coreference with the specified mention factory.

WithinDocCorefTest - Class in com.aliasi.test.unit.coref

WithinDocCorefTest() - Constructor for class com.aliasi.test.unit.coref.WithinDocCorefTest

withinEditDistance(String[], String[]) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch

Returns true if the specified arrays of tokens have an edit distance within the distance specified internally.

withinEditDistance(String[], String[], int) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch

Returns true if the specified arrays of tokens are within the specified maximum distance, allowing for deletion, insertion and substitution costs as specified by SequenceSubstringMatch.deleteCost(String), SequenceSubstringMatch.insertCost(String), and SequenceSubstringMatch.substituteCost(String,String).

word(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the word identifier for the specified token position in the specified document.

wordCount(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample

Returns the number of times tokens of the specified word appeared in the corpus.

wordProbabilities(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation

Returns an array representing of probabilities of words in the specified topic.

wordProbability(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation

Returns the probability of the specified word in the specified topic.

writeBinary(long, int) - Method in class com.aliasi.io.BitOutput

Writes the bits of a binary representation of the specified non-negative number in the specified number of bits.

writeBit(boolean) - Method in class com.aliasi.io.BitOutput

Writes the specified bit.

writeBytesToFile(byte[], File) - Static method in class com.aliasi.util.Files

Writes the specified bytes to the specified file.

writeCharsToFile(char[], File, String) - Static method in class com.aliasi.util.Files

Writes the characters to the specified file, encoded using the specified character set.

writeCount(long) - Method in class com.aliasi.lm.BitTrieWriter

writeCount(long) - Method in interface com.aliasi.lm.TrieWriter

Writes the specified count for the next sub-trie.

writeCounter(CharSeqCounter, TrieWriter, int) - Static method in class com.aliasi.lm.TrieCharSeqCounter

Writes the specified sequence counter to the specified trie writer, restricting output to n-grams not longer than the specified maximum.

writeDelta(long) - Method in class com.aliasi.io.BitOutput

Writes the bits for the Elias delta code for the specified positive number.

writeDoubles(double[], ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable

Write a double array to the specified object output.

writeExternal(ObjectOutput) - Method in class com.aliasi.util.AbstractExternalizable

Writes an object to the specified object output.

writeFalse() - Method in class com.aliasi.io.BitOutput

Writes a single false (0) bit.

writeFibonacci(long) - Method in class com.aliasi.io.BitOutput

Writes the Fibonacci code for the specified positive number.

writeFloats(float[], ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable

Write a float array to the specified object output.

writeGamma(long) - Method in class com.aliasi.io.BitOutput

Writes the bits for the Elias gamma code for the specified positive number.

writeInts(int[], ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable

Write an integer array to the specified object output.

writer(Writer) - Static method in class com.aliasi.io.Reporters

Return a reporter that writes to the specified print writer.

writeRead(NGramBoundaryLM) - Static method in class com.aliasi.test.unit.lm.NGramBoundaryLMTest

writeRead(TrieCharSeqCounter) - Method in class com.aliasi.test.unit.lm.TrieCharSeqCounterTest

writeRice(long, int) - Method in class com.aliasi.io.BitOutput

Writes the bits for Rice code for the specified non-negative number with the specified number of bits fixed for the binary remainder.

writeStringToFile(String, File, String) - Static method in class com.aliasi.util.Files

Writes the string to the specified file, encoded using the specified character set.

writeSymbol(long) - Method in class com.aliasi.lm.BitTrieWriter

writeSymbol(long) - Method in interface com.aliasi.lm.TrieWriter

Writes the specified symbol for the next daughter.

writeTo(OutputStream) - Method in class com.aliasi.lm.NGramBoundaryLM

Writes this language model to the specified output stream.

writeTo(OutputStream) - Method in class com.aliasi.lm.NGramProcessLM

Writes this language model to the specified output stream.

writeTo(OutputStream) - Method in class com.aliasi.lm.TrieCharSeqCounter

Writes an encoding of this counter to the specified output stream.

writeTrue() - Method in class com.aliasi.io.BitOutput

Writes a single true (1) bit.

writeUnary(int) - Method in class com.aliasi.io.BitOutput

Writes the bits for a unary code for the specified positive number.

writeUTFs(String[], ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable

Write a string array to the specified object output.

X

XHtmlWriter - Class in com.aliasi.xml

An XHtmlWriter provides constants and convenience methods for generating strict XHTML 1.0 output.

XHtmlWriter(OutputStream, String) - Constructor for class com.aliasi.xml.XHtmlWriter

XHtmlWriter() - Constructor for class com.aliasi.xml.XHtmlWriter

XML_LANG - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the xml:lang attribute.

XML_SPACE - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the xml:space attribute.

XMLNS - Static variable in class com.aliasi.xml.XHtmlWriter

A constant for the xmlns attribute.

XMLParser<H extends Handler> - Class in com.aliasi.corpus

An XMLParser adapts a handler to be used to handle text extracted from an XML source.

XMLParser() - Constructor for class com.aliasi.corpus.XMLParser

Construct an XML parser with a null handler.

XMLParser(H) - Constructor for class com.aliasi.corpus.XMLParser

Construct an XML parser with the specified handler.

XValidatingObjectCorpus<E> - Class in com.aliasi.corpus

An XValidatingObjectCorpus holds a list of items which it uses to provide training and testing items using cross-validation.

XValidatingObjectCorpus(int) - Constructor for class com.aliasi.corpus.XValidatingObjectCorpus

Construct a cross-validating corpus with the specified number of folds.

XValidatingObjectCorpusTest - Class in com.aliasi.test.unit.corpus

XValidatingObjectCorpusTest() - Constructor for class com.aliasi.test.unit.corpus.XValidatingObjectCorpusTest

Y

yulesQ() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Return the value of Yule's Q statistic.

yulesY() - Method in class com.aliasi.classify.PrecisionRecallEvaluation

Return the value of Yule's Y statistic.

Z

z(int[], int, int) - Method in class com.aliasi.lm.TokenizedLM

Returns the z-score of the specified n-gram with the specified count out of a total sample count, as measured against the expectation of this tokenized language model.

z(int) - Method in class com.aliasi.stats.BinomialDistribution

Returns the z-score for the specified number of successes given this distribution's success probability and number of trials.

z(double, int, int) - Static method in class com.aliasi.stats.BinomialDistribution

Returns the z score for the specified number of successes out of the specified number of trials given the specified success probability.

ZERO_LM - Static variable in class com.aliasi.lm.UniformBoundaryLM

A constant uniform boundary language model returning zero log estimates.

ZipfDistribution - Class in com.aliasi.stats

The ZipfDistribution class provides a finite distribution parameterized by a positive integer number of outcomes with outcome probability inversely proportional to the rank of the outcome (ordered by probablity).

ZipfDistribution(int) - Constructor for class com.aliasi.stats.ZipfDistribution

Construct a Constant Zipf distribution with the specified number of outcomes.

zipfDistribution(int) - Static method in class com.aliasi.stats.ZipfDistribution

Returns the array of probabilities indexed by rank for the Zipf distribution with the specified number of outcomes.

ZipfDistributionTest - Class in com.aliasi.test.unit.stats

ZipfDistributionTest() - Constructor for class com.aliasi.test.unit.stats.ZipfDistributionTest

zScore(String, double) - Method in class com.aliasi.features.ZScoreFeatureExtractor

Return the z-score for the specified feature and value.

ZScoreFeatureExtractor<E> - Class in com.aliasi.features

A ZScoreFeatureExtractor converts features to their z-scores, where means and deviations are determined by a corpus supplied at compile time.

ZScoreFeatureExtractor(Corpus<ObjectHandler<Classified<E>>>, FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.ZScoreFeatureExtractor

Construct a z-core feature extractor from the specified base feature extractor and the training section of the supplied corpus.

ZScoreFeatureExtractorTest - Class in com.aliasi.test.unit.features

ZScoreFeatureExtractorTest() - Constructor for class com.aliasi.test.unit.features.ZScoreFeatureExtractorTest

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