A B C D E F G H I L M N O P R S T U V W

A

accuracy - Variable in class de.datexis.ner.eval.MentionTaggerEval

annotate(Collection<Document>) - Method in class de.datexis.ner.GenericMentionAnnotator

Annotates given documents for English and German texts.

annotate(Collection<Document>) - Method in class de.datexis.ner.MatchingAnnotator

annotate(Iterable<Document>, Annotation.Source) - Method in class de.datexis.ner.MatchingAnnotator

Annotates a Dataset using the pre-trained list.

annotate(Collection<Document>) - Method in class de.datexis.ner.MentionAnnotator

annotateDocumentLabels(Document, Class<Tag>) - Method in class de.datexis.ner.eval.HTMLExport

annotateDocumentLabels(Document, Class<Tag>, Annotation.Source) - Method in class de.datexis.ner.eval.HTMLExport

annotateDocumentLabelsDiff(Document, Class<Tag>) - Method in class de.datexis.ner.eval.HTMLExport

annotateDocumentLabelsDiff(Document, Class<Tag>, Annotation.Source, Annotation.Source) - Method in class de.datexis.ner.eval.HTMLExport

annotateFromTags(Iterable<Document>, Annotation.Source, Class<? extends Tag>) - Static method in class de.datexis.ner.MentionAnnotation

annotateFromTags(Iterable<Document>, Annotation.Source, Class<? extends Tag>, String) - Static method in class de.datexis.ner.MentionAnnotation

annotateFromTags(AbstractIterator, Annotation.Source, Class<? extends Tag>) - Static method in class de.datexis.ner.MentionAnnotation

annotateFromTags(AbstractIterator, Annotation.Source, Class<? extends Tag>, String) - Static method in class de.datexis.ner.MentionAnnotation

annotateFromTags(Document, Annotation.Source, Class<? extends Tag>) - Static method in class de.datexis.ner.MentionAnnotation

annotateFromTags(Document, Annotation.Source, Class<? extends Tag>, String) - Static method in class de.datexis.ner.MentionAnnotation

annotationSource - Variable in class de.datexis.ner.reader.CoNLLDatasetReader

ANY - Static variable in class de.datexis.ner.MentionAnnotation.Type

appendDocumentLabels(Document, Class<Tag>, Annotation.Source, Annotation.Source) - Method in class de.datexis.ner.eval.HTMLExport

appendHeader() - Method in class de.datexis.ner.eval.HTMLExport

appendTrainingCurve(double, double, double) - Method in class de.datexis.ner.eval.MentionTaggerEval

appendTrainingCurve(int, double, double, double, double) - Method in class de.datexis.ner.eval.MentionTaggerEval

B

bestModel - Variable in class de.datexis.ner.MentionAnnotator

build() - Method in class de.datexis.ner.MentionAnnotator.Builder

Builder() - Constructor for class de.datexis.ner.MentionAnnotator.Builder

C

calculateMeasures(Dataset) - Method in class de.datexis.ner.eval.MentionTaggerEval

calculateScores(Dataset) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

calculateScores(Collection<Document>) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

calculateScoresFromAnnotations(Collection<Document>, Class<? extends Annotation>) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

classes - Variable in class de.datexis.ner.eval.MentionTaggerEval

clear() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

clear() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

clear() - Method in class de.datexis.ner.eval.MentionTaggerEval

clearTermsToMatch() - Method in class de.datexis.ner.MatchingAnnotator

CoNLLDatasetReader - Class in de.datexis.ner.reader

Reads a Dataset from CoNLL formatted file.

CoNLLDatasetReader() - Constructor for class de.datexis.ner.reader.CoNLLDatasetReader

CoNLLDatasetReader.Charset - Enum in de.datexis.ner.reader

convertTerms(Stream<String>) - Method in class de.datexis.ner.MatchingAnnotator

convertToLowercase(String) - Method in class de.datexis.ner.MatchingAnnotator

counts - Variable in class de.datexis.ner.eval.MentionAnnotatorEvaluation

countTerms() - Method in class de.datexis.ner.MatchingAnnotator

create() - Static method in class de.datexis.ner.GenericMentionAnnotator

Returns a generic Named Entity Mention Annotator with language detection.

createAnnotations(Iterable<Document>, Annotation.Source) - Method in class de.datexis.ner.MentionAnnotator

createBLSTM(long, long, long, long, int, double) - Static method in class de.datexis.ner.tagger.MentionTagger

createFromPositions(Annotation.Source, Document, int, int, String, String) - Static method in class de.datexis.ner.MentionAnnotation

createTag(String, String) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Returns the NER Label based on current and previous tags

createTags(Iterable<Document>, Annotation.Source) - Method in class de.datexis.ner.MentionAnnotator

createTags(Iterable<Sentence>, INDArray, Class, Annotation.Source, String, boolean, boolean) - Static method in class de.datexis.ner.tagger.MentionTagger

Creates BIO2Tags from predictions.

createTagsFromAnnotations(Document, Annotation.Source, Class<? extends Tag>) - Static method in class de.datexis.ner.MentionAnnotation

createTokenFromLine(String, int, String) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Creates Token from the given line of CoNLL2003 data

D

de.datexis.ner - package de.datexis.ner

de.datexis.ner.eval - package de.datexis.ner.eval

de.datexis.ner.exec - package de.datexis.ner.exec

de.datexis.ner.reader - package de.datexis.ner.reader

de.datexis.ner.tagger - package de.datexis.ner.tagger

deleteTermsToMatch(Collection<String>) - Method in class de.datexis.ner.MatchingAnnotator

deleteTermsToMatch(Stream<String>) - Method in class de.datexis.ner.MatchingAnnotator

deleteTermsToMatch(Resource) - Method in class de.datexis.ner.MatchingAnnotator

div(double, double) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

safe division, where n/0 = 0

E

enableTrainingUI(boolean) - Method in class de.datexis.ner.MentionAnnotator.Builder

enableTrainingUI() - Method in class de.datexis.ner.tagger.MentionTagger

encoders - Variable in class de.datexis.ner.MentionAnnotator.Builder

equals(Object) - Method in class de.datexis.ner.MentionAnnotation

eval - Variable in class de.datexis.ner.eval.MentionTaggerEval

eval(Token, INDArray, INDArray, boolean) - Method in class de.datexis.ner.eval.MentionTaggerEval

evalTimeSeries(INDArray, INDArray) - Method in class de.datexis.ner.eval.MentionTaggerEval

evalTimeSeries(INDArray, INDArray, INDArray) - Method in class de.datexis.ner.eval.MentionTaggerEval

evalTimeSeries(Evaluation) - Method in class de.datexis.ner.eval.MentionTaggerEval

evaluateAnnotations() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

ExecParams() - Constructor for class de.datexis.ner.exec.RunMentionAnnotator.ExecParams

ExecParams() - Constructor for class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

ExecParams() - Constructor for class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

F

f1() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

f1 - Variable in class de.datexis.ner.eval.MentionTaggerEval

fixCounters() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

required to update totalCount() - fixed in next Nd4j https://github.com/deeplearning4j/nd4j/commit/2698b2e23d8ccf6cf71c3bf6fc325e9638877ae8

G

generateDataSet(ArrayList<Sentence>, int, int) - Method in class de.datexis.ner.tagger.MentionTaggerIterator

GENERIC - Static variable in class de.datexis.ner.MentionAnnotation.Type

GenericMentionAnnotator - Class in de.datexis.ner

A generic Named Entity Mention Annotator with language detection.

GenericMentionAnnotator() - Constructor for class de.datexis.ner.GenericMentionAnnotator

Please use GenericMentionAnnotator().create()

getAccuracy() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Micro/Macro Accuracy

getAccuracy(int) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Accuracy per class

getCount(AnnotatorEvaluation.Measure, int) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getEncoderSet() - Method in class de.datexis.ner.tagger.MentionTagger

Deprecated.

getF1(int) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

F1 score per document

getFN() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

getFN(Document, Class<? extends Annotation>) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getFN() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getFP() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

getFP(Document, Class<? extends Annotation>) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getFP() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getHTML() - Method in class de.datexis.ner.eval.HTMLExport

getMacroF1() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Macro F1 score (average F1 over all classes).

getMacroPrecision() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Macro Precision (average Precision over all classes).

getMacroRecall() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Macro Recall (average recall over all classes).

getMicroF1(Dataset) - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

This is CoNLL2003 NER-style F1 $FB1 = 2*$precision*$recall/($precision+$recall) if ($precision+$recall > 0);

getMicroF1() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Micro F1 score (average F1 over all examples).

getMicroPrecision() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Micro Precision (average precision over all examples).

getMicroRecall(Dataset) - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

This is the CoNLL2003 Recall

getMicroRecall() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Micro Recall (average recall over all examples).

getPrecision(int) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Precision per class

getRecall(int) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

Recall per class

getRefId() - Method in class de.datexis.ner.MentionAnnotation

getScore() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getTAccuracy(Dataset) - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

This is CoNLL2003 Accuracy

getTagger() - Method in class de.datexis.ner.MentionAnnotator

getTagset() - Method in class de.datexis.ner.tagger.MentionTagger

getTN() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

getTN(Document, Class<? extends Annotation>) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getTN() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getTokenAccuracy(Dataset) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

This is CoNLL2003 Accuracy

getTP() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

getTP(Document, Class<? extends Annotation>) - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getTP() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

getType() - Method in class de.datexis.ner.MentionAnnotation

getType() - Method in class de.datexis.ner.tagger.MentionTagger

H

hashCode() - Method in class de.datexis.ner.MentionAnnotation

HTMLExport - Class in de.datexis.ner.eval

Export a Document with MentionAnnotations as HTML

HTMLExport(Dataset, Class) - Constructor for class de.datexis.ner.eval.HTMLExport

HTMLExport(Document, Class, Annotation.Source) - Constructor for class de.datexis.ner.eval.HTMLExport

HTMLExport(Iterable<Document>, Class) - Constructor for class de.datexis.ner.eval.HTMLExport

HTMLExport(Iterable<Document>, Class, Annotation.Source) - Constructor for class de.datexis.ner.eval.HTMLExport

HTMLExport(Iterable<Document>, Class, Annotation.Source, Annotation.Source) - Constructor for class de.datexis.ner.eval.HTMLExport

I

inputFiles - Variable in class de.datexis.ner.exec.RunMentionAnnotator.ExecParams

inputFiles - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

L

language - Variable in class de.datexis.ner.exec.RunMentionAnnotator.ExecParams

language - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

language - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

loadTermsToMatch(Collection<String>) - Method in class de.datexis.ner.MatchingAnnotator

loadTermsToMatch(Stream<String>) - Method in class de.datexis.ner.MatchingAnnotator

loadTermsToMatch(Resource) - Method in class de.datexis.ner.MatchingAnnotator

log - Static variable in class de.datexis.ner.eval.HTMLExport

log - Static variable in class de.datexis.ner.eval.MentionAnnotatorEvaluation

log - Static variable in class de.datexis.ner.exec.RunMentionAnnotator

log - Static variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL

log - Static variable in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList

log - Static variable in class de.datexis.ner.GenericMentionAnnotator

log - Static variable in class de.datexis.ner.MatchingAnnotator

log - Static variable in class de.datexis.ner.MentionAnnotator

log - Static variable in class de.datexis.ner.tagger.MentionTagger

M

main(String[]) - Static method in class de.datexis.ner.exec.RunMentionAnnotator

main(String[]) - Static method in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL

main(String[]) - Static method in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList

MatchingAnnotator - Class in de.datexis.ner

An Annotator that creates MentionAnnotations based on a term list for String matching.

MatchingAnnotator() - Constructor for class de.datexis.ner.MatchingAnnotator

MatchingAnnotator(MatchingAnnotator.MatchingStrategy) - Constructor for class de.datexis.ner.MatchingAnnotator

MatchingAnnotator(MatchingAnnotator.MatchingStrategy, Annotation.Source) - Constructor for class de.datexis.ner.MatchingAnnotator

MatchingAnnotator(MatchingAnnotator.MatchingStrategy, Annotation.Source, String) - Constructor for class de.datexis.ner.MatchingAnnotator

MatchingAnnotator(MatchingAnnotator.MatchingStrategy, Annotation.Source, String, int) - Constructor for class de.datexis.ner.MatchingAnnotator

MatchingAnnotator.MatchingStrategy - Enum in de.datexis.ner

matchingStrategy - Variable in class de.datexis.ner.MatchingAnnotator

MentionAnnotation - Class in de.datexis.ner

Annotation of a named entity mention.

MentionAnnotation(Annotation.Source, int, int, String, List<Token>) - Constructor for class de.datexis.ner.MentionAnnotation

Creates a Typed MentionAnnotation using manual Span offsets.

MentionAnnotation(Annotation.Source, String, int, int) - Constructor for class de.datexis.ner.MentionAnnotation

Creates a GENERIC MentionAnnotation using manual Text and Span offsets.

MentionAnnotation(Annotation.Source, List<Token>) - Constructor for class de.datexis.ner.MentionAnnotation

Creates a GENERIC MentionAnnotation using Span offsets from given Tokens.

MentionAnnotation(Annotation.Source, List<Token>, double) - Constructor for class de.datexis.ner.MentionAnnotation

Creates a GENERIC MentionAnnotation using Span offsets from given Tokens.

MentionAnnotation(Document, Annotation.Source, List<Token>, String, double) - Constructor for class de.datexis.ner.MentionAnnotation

Creates a GENERIC MentionAnnotation using Span offsets from given Tokens.

MentionAnnotation() - Constructor for class de.datexis.ner.MentionAnnotation

Deprecated.

only used for JSON deserialization.

MentionAnnotation.Type - Class in de.datexis.ner

MentionAnnotator - Class in de.datexis.ner

A simple NER Annotator that returns a Dataset with Named Entity mentions

MentionAnnotator() - Constructor for class de.datexis.ner.MentionAnnotator

MentionAnnotator(Tagger) - Constructor for class de.datexis.ner.MentionAnnotator

MentionAnnotator.Builder - Class in de.datexis.ner

MentionAnnotatorEval - Class in de.datexis.ner.eval

Deprecated.

MentionAnnotatorEval(String) - Constructor for class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

MentionAnnotatorEval(String, Annotation.Source, Annotation.Source) - Constructor for class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

MentionAnnotatorEval(String, Dataset, Dataset) - Constructor for class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

MentionAnnotatorEvaluation - Class in de.datexis.ner.eval

Evaluates Precision/Recall/F1 for Annotation Matching.

MentionAnnotatorEvaluation(String, Annotation.Match) - Constructor for class de.datexis.ner.eval.MentionAnnotatorEvaluation

MentionAnnotatorEvaluation(String, Annotation.Source, Annotation.Source, Annotation.Match) - Constructor for class de.datexis.ner.eval.MentionAnnotatorEvaluation

MentionTagger - Class in de.datexis.ner.tagger

Assigns BIO2 or BIOES Labels to every Token in a Document.

MentionTagger() - Constructor for class de.datexis.ner.tagger.MentionTagger

MentionTagger(String) - Constructor for class de.datexis.ner.tagger.MentionTagger

MentionTagger(AbstractIterator, int, int, int, double) - Constructor for class de.datexis.ner.tagger.MentionTagger

MentionTaggerEval - Class in de.datexis.ner.eval

Evaluates Precision/Recall/F1 for token-based labeling (e.g.

MentionTaggerEval(String) - Constructor for class de.datexis.ner.eval.MentionTaggerEval

MentionTaggerEval(String, Class) - Constructor for class de.datexis.ner.eval.MentionTaggerEval

MentionTaggerEval(String, Class, Annotation.Source, Annotation.Source) - Constructor for class de.datexis.ner.eval.MentionTaggerEval

MentionTaggerIterator - Class in de.datexis.ner.tagger

Iterates through a Document, one Sentence per Example.

MentionTaggerIterator(Collection<Document>, String, EncoderSet, Class, Annotation.Source, int, int, boolean) - Constructor for class de.datexis.ner.tagger.MentionTaggerIterator

Create an Iterator for training.

MentionTaggerIterator(Collection<Document>, String, EncoderSet, Class, int, int, boolean) - Constructor for class de.datexis.ner.tagger.MentionTaggerIterator

minimumWordLength - Variable in class de.datexis.ner.MatchingAnnotator

N

name - Variable in class de.datexis.ner.reader.CoNLLDatasetReader

nextTokens() - Method in class de.datexis.ner.tagger.MentionTaggerIterator

Returns the next Sentence in the Dataset as Tokens.

NOUN - Static variable in class de.datexis.ner.MentionAnnotation.Type

NOUNPHRASE - Static variable in class de.datexis.ner.MentionAnnotation.Type

O

outputPath - Variable in class de.datexis.ner.exec.RunMentionAnnotator.ExecParams

outputPath - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

outputPath - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

P

precision() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

precision - Variable in class de.datexis.ner.eval.MentionTaggerEval

pretrain(Dataset) - Method in class de.datexis.ner.MentionAnnotator.Builder

pretrain encoders

printAnnotationStats() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

printAnnotationStats() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

printHeader() - Static method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

printRow() - Method in class de.datexis.ner.eval.MentionAnnotatorEvaluation

printSequenceClassStats() - Method in class de.datexis.ner.eval.MentionTaggerEval

printSequenceClassStats(boolean) - Method in class de.datexis.ner.eval.MentionTaggerEval

printSequenceStats() - Method in class de.datexis.ner.eval.MentionTaggerEval

printTrainingCurve() - Method in class de.datexis.ner.eval.MentionTaggerEval

R

read(Resource) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Read a Dataset from CoNLL file

read(Resource, CoNLLDatasetReader.Charset) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Read a Dataset from CoNLL file

readDataset(Resource, String, CoNLLDatasetReader.Charset) - Static method in class de.datexis.ner.reader.CoNLLDatasetReader

Read a Dataset from CoNLL file (static version with default reader)

readLines(Iterator<String>) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Create a Document from the given data

recall() - Method in class de.datexis.ner.eval.MentionAnnotatorEval

Deprecated.

recall - Variable in class de.datexis.ner.eval.MentionTaggerEval

refId - Variable in class de.datexis.ner.MentionAnnotation

Referenced ID, e.g.

removePlurals(String) - Method in class de.datexis.ner.MatchingAnnotator

runAnnotator(RunMentionAnnotator.ExecParams) - Method in class de.datexis.ner.exec.RunMentionAnnotator

RunMentionAnnotator - Class in de.datexis.ner.exec

Main Controller for training of MentionAnnotator / NER models.

RunMentionAnnotator() - Constructor for class de.datexis.ner.exec.RunMentionAnnotator

RunMentionAnnotator.ExecParams - Class in de.datexis.ner.exec

runTraining(TrainMentionAnnotatorCoNLL.ExecParams) - Method in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL

runTraining(TrainMentionAnnotatorSeedList.ExecParams) - Method in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList

S

saveHTML(Resource, String) - Method in class de.datexis.ner.eval.HTMLExport

seedList - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

setModelParams(int, int, int, double) - Method in class de.datexis.ner.tagger.MentionTagger

setParams(CommandLine) - Method in class de.datexis.ner.exec.RunMentionAnnotator.ExecParams

setParams(CommandLine) - Method in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

setParams(CommandLine) - Method in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

setRefId(String) - Method in class de.datexis.ner.MentionAnnotation

setTagset(Class<? extends Tag>) - Method in class de.datexis.ner.tagger.MentionTagger

setTagset(Class<? extends Tag>, String) - Method in class de.datexis.ner.tagger.MentionTagger

setTrainingParams(int, int, boolean) - Method in class de.datexis.ner.tagger.MentionTagger

setType(String) - Method in class de.datexis.ner.MentionAnnotation

Set the type of the Annotation

setType(String) - Method in class de.datexis.ner.tagger.MentionTagger

setUpCliOptions() - Method in class de.datexis.ner.exec.RunMentionAnnotator.ExecParams

setUpCliOptions() - Method in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

setUpCliOptions() - Method in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

setWorkspaceParams(int) - Method in class de.datexis.ner.tagger.MentionTagger

source - Variable in class de.datexis.ner.MatchingAnnotator

source - Variable in class de.datexis.ner.tagger.MentionTaggerIterator

stringSearch - Variable in class de.datexis.ner.MatchingAnnotator

T

tag(Collection<Document>) - Method in class de.datexis.ner.tagger.MentionTagger

Predicts labels for all Tokens in the Iterator and assigns Tags (BIO2 or BIOES).

tagIndex - Variable in class de.datexis.ner.reader.CoNLLDatasetReader

tagSentences(Collection<Sentence>) - Method in class de.datexis.ner.tagger.MentionTagger

tagset - Variable in class de.datexis.ner.eval.MentionTaggerEval

tagset - Variable in class de.datexis.ner.MentionAnnotator.Builder

tagset - Variable in class de.datexis.ner.tagger.MentionTagger

test(MentionTaggerIterator) - Method in class de.datexis.ner.tagger.MentionTagger

testModel(Dataset, Annotation.Source) - Method in class de.datexis.ner.tagger.MentionTagger

requires: GOLD BIO2Tag.class and BIOESTag.class for Token.class attaches: PRED BIO2Tag.class and BIOESTag.class to Token.class

testPath - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

toString() - Method in class de.datexis.ner.MentionAnnotation

toString() - Method in class de.datexis.ner.MentionAnnotator

trainingPath - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

trainingUI - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

trainingUI - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorSeedList.ExecParams

TrainMentionAnnotatorCoNLL - Class in de.datexis.ner.exec

Main Controller for training of MentionAnnotator / NER models.

TrainMentionAnnotatorCoNLL() - Constructor for class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL

TrainMentionAnnotatorCoNLL() - Method in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

TrainMentionAnnotatorCoNLL.ExecParams - Class in de.datexis.ner.exec

TrainMentionAnnotatorSeedList - Class in de.datexis.ner.exec

Main Controller for training of MentionAnnotator / NER models.

TrainMentionAnnotatorSeedList() - Constructor for class de.datexis.ner.exec.TrainMentionAnnotatorSeedList

TrainMentionAnnotatorSeedList.ExecParams - Class in de.datexis.ner.exec

trainModel(Dataset, Dataset, WordHelpers.Language) - Method in class de.datexis.ner.MentionAnnotator

trainModel(Dataset, Annotation.Source, WordHelpers.Language) - Method in class de.datexis.ner.MentionAnnotator

trainModel(Dataset, Annotation.Source, WordHelpers.Language, int, boolean, boolean) - Method in class de.datexis.ner.MentionAnnotator

Trains the NER model using a complete Dataset with MentionAnnotations

trainModel(Collection<Sentence>, Annotation.Source, WordHelpers.Language) - Method in class de.datexis.ner.MentionAnnotator

Trains the NER model using selected Sentences (BIO2Tags are required and will not be generated)

trainModel(Dataset) - Method in class de.datexis.ner.tagger.MentionTagger

trainModel(Dataset, Annotation.Source) - Method in class de.datexis.ner.tagger.MentionTagger

trainModel(Dataset, Annotation.Source, int, boolean) - Method in class de.datexis.ner.tagger.MentionTagger

trainModel(Collection<Sentence>, Annotation.Source, boolean) - Method in class de.datexis.ner.tagger.MentionTagger

trainModel(MentionTaggerIterator) - Method in class de.datexis.ner.tagger.MentionTagger

trainModelEarlyStopping(Dataset, Dataset, Annotation.Source, WordHelpers.Language, int, int, int, int) - Method in class de.datexis.ner.MentionAnnotator

type - Variable in class de.datexis.ner.MatchingAnnotator

type - Variable in class de.datexis.ner.MentionAnnotation

Type of the annotation, e.g.

Type() - Constructor for class de.datexis.ner.MentionAnnotation.Type

type - Variable in class de.datexis.ner.reader.CoNLLDatasetReader

type - Variable in class de.datexis.ner.tagger.MentionTagger

types - Variable in class de.datexis.ner.MentionAnnotator.Builder

U

uppercaseMatcher - Variable in class de.datexis.ner.MatchingAnnotator

useFirstSentenceAsTitle - Variable in class de.datexis.ner.reader.CoNLLDatasetReader

V

validationPath - Variable in class de.datexis.ner.exec.TrainMentionAnnotatorCoNLL.ExecParams

valueOf(String) - Static method in enum de.datexis.ner.MatchingAnnotator.MatchingStrategy

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum de.datexis.ner.reader.CoNLLDatasetReader.Charset

Returns the enum constant of this type with the specified name.

values() - Static method in enum de.datexis.ner.MatchingAnnotator.MatchingStrategy

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum de.datexis.ner.reader.CoNLLDatasetReader.Charset

Returns an array containing the constants of this enum type, in the order they are declared.

W

withAnnotationSource(Annotation.Source) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

withEncoders(String, Encoder...) - Method in class de.datexis.ner.MentionAnnotator.Builder

withEncoders(Encoder...) - Method in class de.datexis.ner.MentionAnnotator.Builder

withFirstSentenceAsTitle(boolean) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Use a copy of every first sentence as Document title.

withGenericType(String) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

withModelParams(int, int) - Method in class de.datexis.ner.MentionAnnotator.Builder

withName(String) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Use a specific name for the Dataset.

withTagIndex(int) - Method in class de.datexis.ner.reader.CoNLLDatasetReader

Use a specific column as NER tag.

withTrainingParams(double, int, int) - Method in class de.datexis.ner.MentionAnnotator.Builder

withTypes(MentionAnnotation.Type) - Method in class de.datexis.ner.MentionAnnotator.Builder

withTypes(String) - Method in class de.datexis.ner.MentionAnnotator.Builder

withWorkspaceParams(int) - Method in class de.datexis.ner.MentionAnnotator.Builder

wordHelpers - Variable in class de.datexis.ner.MatchingAnnotator

wordLengthMatcher - Variable in class de.datexis.ner.MatchingAnnotator

workers - Variable in class de.datexis.ner.tagger.MentionTagger

writeBestModel(Resource, String) - Method in class de.datexis.ner.MentionAnnotator

Writes .xml and binary models

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