A B C D E F G I M R S V

A

addCustomFeature(CustomBlobFeature) - Static method in class ij.blob.Blob

B

Blob - Class in ij.blob

Represents a connected component - a so called "blob".

Blob(Polygon, int) - Constructor for class ij.blob.Blob

Blob(Polygon, int, Calibration) - Constructor for class ij.blob.Blob

C

CustomBlobFeature - Class in ij.blob

Abstract class for define own features.

CustomBlobFeature() - Constructor for class ij.blob.CustomBlobFeature

D

draw(ImageProcessor, int) - Method in class ij.blob.Blob

Draws the Blob with or without its holes.

draw(ImageProcessor) - Method in class ij.blob.Blob

Draws the Blob with its holes.

DRAW_CONVEX_HULL - Static variable in class ij.blob.Blob

DRAW_HOLES - Static variable in class ij.blob.Blob

DRAW_LABEL - Static variable in class ij.blob.Blob

E

evaluateCustomFeature(String, Object...) - Method in class ij.blob.Blob

Evaluates the Custom Feature and return its value

F

filterBlobs(double, double, String, Object...) - Method in class ij.blob.ManyBlobs

Filter all blobs which feature (specified by the methodName) is higher than the lowerLimit or lower than the upper limit.

filterBlobs(double[], String, Object...) - Method in class ij.blob.ManyBlobs

Filter all blobs which feature (specified by the methodName) is higher than the lowerLimit and lower than the upper limit.

filterBlobs(double, String, Object...) - Method in class ij.blob.ManyBlobs

Filter all blobs which feature (specified by the methodName) is higher than the lower limit.

findConnectedComponents() - Method in class ij.blob.ManyBlobs

Start the Connected Component Algorithm

G

generateBlobImage(Blob) - Static method in class ij.blob.Blob

getAllBoundingRectangles(int[], int[]) - Static method in class ij.blob.RotatingCalipers

getAllBoundingRectangles(List<Point>) - Static method in class ij.blob.RotatingCalipers

getArea(Point2D.Double[]) - Static method in class ij.blob.RotatingCalipers

GETAREACONVEXHULL - Static variable in class ij.blob.Blob

Method name of getAreaConvexHull (for filtering).

getAreaConvexHull() - Method in class ij.blob.Blob

GETAREATOPERIMETERRATIO - Static variable in class ij.blob.Blob

Method name of getAreaToPerimeterRatio (for filtering).

getAreaToPerimeterRatio() - Method in class ij.blob.Blob

Area/Perimeter

GETASPECTRATIO - Static variable in class ij.blob.Blob

Method name of getLongSideMBR (for filtering).

getAspectRatio() - Method in class ij.blob.Blob

getBlob() - Method in class ij.blob.CustomBlobFeature

Getter method for the blob.

getBlobByLabel(int) - Method in class ij.blob.ManyBlobs

getCenterOfGravity() - Method in class ij.blob.Blob

Return the geometric center of gravity of the blob.

getCentralMoments(int, int) - Method in class ij.blob.Blob

Central Moments Definition of "Gorman et. al.

GETCIRCULARITY - Static variable in class ij.blob.Blob

Method name of getCircularity (for filtering).

getCircularity() - Method in class ij.blob.Blob

Calculates the circularity of the outer contour: (perimeter*perimeter) / (enclosed area).

GETCONTOURTEMPERATURE - Static variable in class ij.blob.Blob

Method name of getContourTemperature (for filtering).

getContourTemperature() - Method in class ij.blob.Blob

Calculates the Contour Temperatur.

getConvexHull() - Method in class ij.blob.Blob

Returns the convex hull of the blob.

GETCONVEXITY - Static variable in class ij.blob.Blob

Method name of getConvexity (for filtering).

getConvexity() - Method in class ij.blob.Blob

getDiamaterMaximumInscribedCircle() - Method in class ij.blob.Blob

GETDIAMETERMAXIMUMINSCRIBEDCIRCLE - Static variable in class ij.blob.Blob

Method name of getMaximumInscribedCircle (for filtering).

getEigenvalueMajorAxis() - Method in class ij.blob.Blob

Calculates Eigenvalue from the major axis using the moments of the boundary

getEigenvalueMinorAxis() - Method in class ij.blob.Blob

Calculates Eigenvalue from the minor axis using the moments of the boundary

GETELONGATION - Static variable in class ij.blob.Blob

Method name of getElongation (for filtering).

getElongation() - Method in class ij.blob.Blob

The Elongation of the Blob based on a fitted ellipse (1 - minor axis / major axis)

GETENCLOSEDAREA - Static variable in class ij.blob.Blob

Method name of getEnclosedArea (for filtering).

getEnclosedArea() - Method in class ij.blob.Blob

Calculates the enclosed are of the outer contour without subsctracting possible holes.

GETFERETDIAMETER - Static variable in class ij.blob.Blob

Method name of getFeretDiameter (for filtering).

getFeretDiameter() - Method in class ij.blob.Blob

Calculates the feret diameter of the outer contour

GETFRACTALBOXDIMENSION - Static variable in class ij.blob.Blob

Method name of getContourTemperature (for filtering).

getFractalBoxDimension(int[]) - Method in class ij.blob.Blob

Box Dimension of the blob boundary.

getFractalBoxDimension() - Method in class ij.blob.Blob

getFractalDimensionGoodness() - Method in class ij.blob.Blob

The goodness of the "best fit" line of the fractal box dimension estimation.

getIndex(List<Point>, RotatingCalipers.Corner) - Static method in class ij.blob.RotatingCalipers

getInnerContours() - Method in class ij.blob.Blob

Return all inner contours (holes) of the blob.

getLabel() - Method in class ij.blob.Blob

Return the label of the blob in the labeled image

getLabeledImage() - Method in class ij.blob.ManyBlobs

GETLONGSIDEMBR - Static variable in class ij.blob.Blob

Method name of getLongSideMBR (for filtering).

getLongSideMBR() - Method in class ij.blob.Blob

GETMINFERETDIAMETER - Static variable in class ij.blob.Blob

Method name of getMinFeretDiameter (for filtering).

getMinFeretDiameter() - Method in class ij.blob.Blob

Calculates the min feret diameter of the outer contour

getMinimumBoundingRectangle() - Method in class ij.blob.Blob

getMinimumBoundingRectangle(int[], int[]) - Static method in class ij.blob.RotatingCalipers

getMinimumBoundingRectangle(List<Point>) - Static method in class ij.blob.RotatingCalipers

getMoment(int, int) - Method in class ij.blob.Blob

Region-Based Moments Definition of "Gorman et. al.

GETNUMBEROFHOLES - Static variable in class ij.blob.Blob

Method name of getNumberofHoles (for filtering).

getNumberofHoles() - Method in class ij.blob.Blob

The number of inner contours (Holes) of a blob.

GETORIENTATIONMAJORAXIS - Static variable in class ij.blob.Blob

getOrientationMajorAxis() - Method in class ij.blob.Blob

GETORIENTATIONMINORAXIS - Static variable in class ij.blob.Blob

getOrientationMinorAxis() - Method in class ij.blob.Blob

getOuterContour() - Method in class ij.blob.Blob

The outer contour of an object (polygon points are pixel indicies)

getOuterContourAsChainCode() - Method in class ij.blob.Blob

Calculates the freeman chain code the outer contour

getOuterContourAsROI() - Method in class ij.blob.Blob

GETPERIMETER - Static variable in class ij.blob.Blob

Method name of getPerimeter (for filtering).

getPerimeter() - Method in class ij.blob.Blob

Calculates the perimeter of the outer contour using its chain code

GETPERIMETERCONVEXHULL - Static variable in class ij.blob.Blob

Method name of getPerimeterConvexHull (for filtering).

getPerimeterConvexHull() - Method in class ij.blob.Blob

Calculates the perimeter of the convex hull

GETSHORTSIDEMBR - Static variable in class ij.blob.Blob

Method name of getLongSideMBR (for filtering).

getShortSideMBR() - Method in class ij.blob.Blob

GETSOLIDITY - Static variable in class ij.blob.Blob

Method name of getSolidity (for filtering).

getSolidity() - Method in class ij.blob.Blob

getSpecificBlob(int, int) - Method in class ij.blob.ManyBlobs

Returns a specific Blob which encompasses a point

getSpecificBlob(Point) - Method in class ij.blob.ManyBlobs

Returns a specific blob which encompasses a point

GETTHINNESRATIO - Static variable in class ij.blob.Blob

Method name of getThinnesRatio (for filtering).

getThinnesRatio() - Method in class ij.blob.Blob

The Thinnes Ratio of the blob (normed).

I

ij.blob - package ij.blob

isOnEdge(ImageProcessor) - Method in class ij.blob.Blob

Checks if the blob is on the edge of the image.

M

ManyBlobs - Class in ij.blob

Represents the result-set of all detected blobs as ArrayList

ManyBlobs() - Constructor for class ij.blob.ManyBlobs

ManyBlobs(ImagePlus) - Constructor for class ij.blob.ManyBlobs

R

RotatingCalipers - Class in ij.blob

RotatingCalipers() - Constructor for class ij.blob.RotatingCalipers

RotatingCalipers.Caliper - Class in ij.blob

RotatingCalipers.Corner - Enum in ij.blob

S

setBackground(int) - Method in class ij.blob.ManyBlobs

Mutator to modify the background target.

setCalibration(Calibration) - Method in class ij.blob.Blob

setDefaultColor(Color) - Static method in class ij.blob.Blob

Changes the default blob color.

setLabeledImage(ImagePlus) - Method in class ij.blob.ManyBlobs

V

valueOf(String) - Static method in enum ij.blob.RotatingCalipers.Corner

Returns the enum constant of this type with the specified name.

values() - Static method in enum ij.blob.RotatingCalipers.Corner

Returns an array containing the constants of this enum type, in the order they are declared.

A B C D E F G I M R S V