de.bioforscher.singa.simulation.parser.sbml.converter

Class SBMLReactionConverter

java.lang.Object

de.bioforscher.singa.simulation.parser.sbml.converter.SBMLReactionConverter

public class SBMLReactionConverter
extends Object

Converts JSBML Reactions to SiNGA Reactions

Author:

cl

Constructor Summary

Constructors

Constructor and Description
SBMLReactionConverter(Map<String,javax.measure.Unit<?>> units, Map<String,ChemicalEntity> entities, Map<String,FunctionReference> functions, Map<String,SimulationParameter<?>> globalParameters)

Method Summary

Modifier and Type	Method and Description
DynamicReaction	convertReaction(org.sbml.jsbml.Reaction reaction)
List<DynamicReaction>	convertReactions(org.sbml.jsbml.ListOf<org.sbml.jsbml.Reaction> sbmlReactions)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SBMLReactionConverter

public SBMLReactionConverter(Map<String,javax.measure.Unit<?>> units,
                             Map<String,ChemicalEntity> entities,
                             Map<String,FunctionReference> functions,
                             Map<String,SimulationParameter<?>> globalParameters)

Method Detail

convertReactions

public List<DynamicReaction> convertReactions(org.sbml.jsbml.ListOf<org.sbml.jsbml.Reaction> sbmlReactions)

convertReaction

public DynamicReaction convertReaction(org.sbml.jsbml.Reaction reaction)