de.bioforscher.singa.simulation.modules.reactions.model

Class StoichiometricReactant

java.lang.Object

de.bioforscher.singa.simulation.modules.reactions.model.Reactant

de.bioforscher.singa.simulation.modules.reactions.model.StoichiometricReactant

public class StoichiometricReactant
extends Reactant

StoichiometricReactants are Reactants that are consumed or produced during the reaction. A StoichiometricReactant can be rate determining and has an associated stoichiometric number and/or reaction order. In Reactions that are not elementary reactions, the reaction order is used to determine the velocity of a reaction. In elementary reactions the stoichiometric number is used to this end.

Constructor Summary

Constructors

Constructor and Description
StoichiometricReactant(ChemicalEntity entity, ReactantRole role)
StoichiometricReactant(ChemicalEntity entity, ReactantRole role, boolean rateDetermining)
StoichiometricReactant(ChemicalEntity entity, ReactantRole role, double stoichiometricNumber)
StoichiometricReactant(ChemicalEntity entity, ReactantRole role, double stoichiometricNumber, double reactionOrder)

Method Summary

Modifier and Type	Method and Description
double	getReactionOrder()
double	getStoichiometricNumber()
boolean	isProduct()
boolean	isRateDetermining()
boolean	isSubstrate()
void	setRateDetermining(boolean rateDetermining)
void	setReactionOrder(double reactionOrder)
void	setStoichiometricNumber(double stoichiometricNumber)

Methods inherited from class de.bioforscher.singa.simulation.modules.reactions.model.Reactant

getEntity, getRole, setEntity, setRole

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StoichiometricReactant

public StoichiometricReactant(ChemicalEntity entity,
                              ReactantRole role,
                              double stoichiometricNumber,
                              double reactionOrder)

StoichiometricReactant

public StoichiometricReactant(ChemicalEntity entity,
                              ReactantRole role,
                              double stoichiometricNumber)

StoichiometricReactant

public StoichiometricReactant(ChemicalEntity entity,
                              ReactantRole role,
                              boolean rateDetermining)

StoichiometricReactant

public StoichiometricReactant(ChemicalEntity entity,
                              ReactantRole role)

Method Detail

getStoichiometricNumber

public double getStoichiometricNumber()

setStoichiometricNumber

public void setStoichiometricNumber(double stoichiometricNumber)

getReactionOrder

public double getReactionOrder()

setReactionOrder

public void setReactionOrder(double reactionOrder)

isRateDetermining

public boolean isRateDetermining()

setRateDetermining

public void setRateDetermining(boolean rateDetermining)

isSubstrate

public boolean isSubstrate()

isProduct

public boolean isProduct()