de.bioforscher.singa.simulation.modules.reactions.implementations

Class MichaelisMentenReaction

java.lang.Object

de.bioforscher.singa.simulation.modules.model.AbstractSectionSpecificModule

de.bioforscher.singa.simulation.modules.reactions.model.Reaction

de.bioforscher.singa.simulation.modules.reactions.implementations.MichaelisMentenReaction

All Implemented Interfaces:

Featureable, Module

public class MichaelisMentenReaction
extends Reaction

Author:

cl

Field Summary

Fields inherited from class de.bioforscher.singa.simulation.modules.reactions.model.Reaction

availableFeatures

Fields inherited from class de.bioforscher.singa.simulation.modules.model.AbstractSectionSpecificModule

halfTime

Constructor Summary

Constructors

Constructor and Description
MichaelisMentenReaction(Simulation simulation, Enzyme enzyme)

Method Summary

Modifier and Type	Method and Description
double	calculateVelocity(ConcentrationContainer concentrationContainer)

Methods inherited from class de.bioforscher.singa.simulation.modules.reactions.model.Reaction

calculateDeltas, determineConcentration, getAvailableFeatures, getDisplayString, getFeature, getFeatures, getProducts, getScaledFeature, getStoichiometricReactants, getSubstrates, hasFeature, isElementary, setElementary, setFeature, setFeature, setStoichiometricReactants

Methods inherited from class de.bioforscher.singa.simulation.modules.model.AbstractSectionSpecificModule

addDeltaFunction, applyAlways, determineAllDeltas, determineDeltas, determineDeltasForNode, getCurrentCellSection, getCurrentNode, getFeature, getLargestLocalError, getSimulation, onlyApplyIf, resetLargestLocalError, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.features.model.Featureable

canBeFeaturedWith, scaleScalableFeatures

Constructor Detail

MichaelisMentenReaction

public MichaelisMentenReaction(Simulation simulation,
                               Enzyme enzyme)

Method Detail

calculateVelocity

public double calculateVelocity(ConcentrationContainer concentrationContainer)

Specified by:

calculateVelocity in class Reaction