de.bioforscher.singa.simulation.modules.model

Class AbstractNeighbourIndependentModule

java.lang.Object

de.bioforscher.singa.simulation.modules.model.AbstractNeighbourIndependentModule

All Implemented Interfaces:

Module

Direct Known Subclasses:

PassiveMembraneTransport

public abstract class AbstractNeighbourIndependentModule
extends Object
implements Module

Author:

cl

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	halfTime

Constructor Summary

Constructors

Constructor and Description
AbstractNeighbourIndependentModule()
AbstractNeighbourIndependentModule(Simulation simulation)

Method Summary

Modifier and Type	Method and Description
void	addDeltaFunction(Function<ConcentrationContainer,Delta> deltaFunction, Predicate<ConcentrationContainer> predicate)
void	applyAlways()
void	determineAllDeltas()
LocalError	determineDeltas(ConcentrationContainer concentrationContainer)
LocalError	determineDeltasForNode(AutomatonNode node)
CellSection	getCurrentCellSection()
ChemicalEntity	getCurrentChemicalEntity()
AutomatonNode	getCurrentNode()
protected <FeatureContent> FeatureContent	getFeature(ChemicalEntity<?> entity, Class<? extends ScalableFeature<FeatureContent>> featureClass)
LocalError	getLargestLocalError()
Simulation	getSimulation()
void	onlyApplyIf(Predicate<AutomatonNode> predicate)
void	resetLargestLocalError()
void	setSimulation(Simulation simulation)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

halfTime

protected boolean halfTime

Constructor Detail

AbstractNeighbourIndependentModule

public AbstractNeighbourIndependentModule()

AbstractNeighbourIndependentModule

public AbstractNeighbourIndependentModule(Simulation simulation)

Method Detail

getSimulation

public Simulation getSimulation()

setSimulation

public void setSimulation(Simulation simulation)

addDeltaFunction

public void addDeltaFunction(Function<ConcentrationContainer,Delta> deltaFunction,
                             Predicate<ConcentrationContainer> predicate)

getCurrentNode

public AutomatonNode getCurrentNode()

getCurrentChemicalEntity

public ChemicalEntity getCurrentChemicalEntity()

getCurrentCellSection

public CellSection getCurrentCellSection()

onlyApplyIf

public void onlyApplyIf(Predicate<AutomatonNode> predicate)

applyAlways

public void applyAlways()

getFeature

protected <FeatureContent> FeatureContent getFeature(ChemicalEntity<?> entity,
                                                     Class<? extends ScalableFeature<FeatureContent>> featureClass)

determineAllDeltas

public void determineAllDeltas()

Specified by:

determineAllDeltas in interface Module

determineDeltasForNode

public LocalError determineDeltasForNode(AutomatonNode node)

Specified by:

determineDeltasForNode in interface Module

determineDeltas

public LocalError determineDeltas(ConcentrationContainer concentrationContainer)

getLargestLocalError

public LocalError getLargestLocalError()

Specified by:

getLargestLocalError in interface Module

resetLargestLocalError

public void resetLargestLocalError()

Specified by:

resetLargestLocalError in interface Module