Uses of Class
de.bioforscher.singa.simulation.model.graphs.AutomatonNode

Packages that use AutomatonNode

Package	Description
de.bioforscher.singa.simulation.events
de.bioforscher.singa.simulation.model.compartments
de.bioforscher.singa.simulation.model.graphs
de.bioforscher.singa.simulation.model.rules
de.bioforscher.singa.simulation.modules.model

Uses of AutomatonNode in de.bioforscher.singa.simulation.events

Methods in de.bioforscher.singa.simulation.events that return AutomatonNode

Modifier and Type	Method and Description
AutomatonNode	NodeUpdatedEvent.getNode()

Methods in de.bioforscher.singa.simulation.events with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	EpochUpdateWriter.addNodeToObserve(AutomatonNode node)

Constructors in de.bioforscher.singa.simulation.events with parameters of type AutomatonNode

Constructor and Description
NodeUpdatedEvent(javax.measure.Quantity<javax.measure.quantity.Time> time, AutomatonNode node)

Uses of AutomatonNode in de.bioforscher.singa.simulation.model.compartments

Methods in de.bioforscher.singa.simulation.model.compartments that return types with arguments of type AutomatonNode

Modifier and Type	Method and Description
Set<AutomatonNode>	CellSection.getContent() Returns the nodes belonging to this cell section.

Methods in de.bioforscher.singa.simulation.model.compartments with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	CellSection.addNode(AutomatonNode node) Adds a node to the section, without altering the state of the node.

Method parameters in de.bioforscher.singa.simulation.model.compartments with type arguments of type AutomatonNode

Modifier and Type	Method and Description
void	CellSection.setContent(Set<AutomatonNode> content) Sets the content of this cell section.

Uses of AutomatonNode in de.bioforscher.singa.simulation.model.graphs

Methods in de.bioforscher.singa.simulation.model.graphs with parameters of type AutomatonNode

Modifier and Type	Method and Description
int	AutomatonGraph.addEdgeBetween(AutomatonNode source, AutomatonNode target)
int	AutomatonGraph.addEdgeBetween(int identifier, AutomatonNode source, AutomatonNode target)

Uses of AutomatonNode in de.bioforscher.singa.simulation.model.rules

Methods in de.bioforscher.singa.simulation.model.rules with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	AssignmentRule.applyRule(AutomatonNode node)

Uses of AutomatonNode in de.bioforscher.singa.simulation.modules.model

Methods in de.bioforscher.singa.simulation.modules.model that return AutomatonNode

Modifier and Type	Method and Description
AutomatonNode	AbstractSectionSpecificModule.getCurrentNode()
AutomatonNode	AbstractNeighbourIndependentModule.getCurrentNode()
AutomatonNode	AbstractNeighbourDependentModule.getCurrentNode()
AutomatonNode	LocalError.getNode()

Methods in de.bioforscher.singa.simulation.modules.model with parameters of type AutomatonNode

Modifier and Type	Method and Description
LocalError	AbstractSectionSpecificModule.determineDeltasForNode(AutomatonNode node)
LocalError	AbstractNeighbourIndependentModule.determineDeltasForNode(AutomatonNode node)
LocalError	AbstractNeighbourDependentModule.determineDeltasForNode(AutomatonNode node)
LocalError	Module.determineDeltasForNode(AutomatonNode node)
void	Simulation.emitNextEpochEvent(AutomatonNode node) Emits the NodeUpdatedEvent to all listeners.

Method parameters in de.bioforscher.singa.simulation.modules.model with type arguments of type AutomatonNode

Modifier and Type	Method and Description
void	AbstractSectionSpecificModule.onlyApplyIf(Predicate<AutomatonNode> predicate)
void	AbstractNeighbourIndependentModule.onlyApplyIf(Predicate<AutomatonNode> predicate)
void	AbstractNeighbourDependentModule.onlyApplyIf(Predicate<AutomatonNode> predicate)

Constructors in de.bioforscher.singa.simulation.modules.model with parameters of type AutomatonNode

Constructor and Description
LocalError(AutomatonNode node, ChemicalEntity<?> entity, double value)