Uses of Interface
de.bioforscher.singa.simulation.model.concentrations.ConcentrationContainer

Packages that use ConcentrationContainer

Package	Description
de.bioforscher.singa.simulation.model.concentrations
de.bioforscher.singa.simulation.model.graphs
de.bioforscher.singa.simulation.modules.model
de.bioforscher.singa.simulation.modules.reactions.implementations
de.bioforscher.singa.simulation.modules.reactions.model

Uses of ConcentrationContainer in de.bioforscher.singa.simulation.model.concentrations

Classes in de.bioforscher.singa.simulation.model.concentrations that implement ConcentrationContainer

Modifier and Type	Class and Description
class	MembraneContainer In this representation of a membrane is divided into four parts.
class	MultiConcentrationContainer
class	SimpleConcentrationContainer

Methods in de.bioforscher.singa.simulation.model.concentrations that return ConcentrationContainer

Modifier and Type	Method and Description
ConcentrationContainer	ConcentrationContainer.getCopy() Returns a copy of this concentration container.

Uses of ConcentrationContainer in de.bioforscher.singa.simulation.model.graphs

Methods in de.bioforscher.singa.simulation.model.graphs that return ConcentrationContainer

Modifier and Type	Method and Description
ConcentrationContainer	AutomatonNode.getConcentrationContainer() Returns the ConcentrationContainer used by this node.

Methods in de.bioforscher.singa.simulation.model.graphs with parameters of type ConcentrationContainer

Modifier and Type	Method and Description
void	AutomatonNode.setConcentrationContainer(ConcentrationContainer concentrationContainer) Sets the ConcentrationContainer for this node.

Uses of ConcentrationContainer in de.bioforscher.singa.simulation.modules.model

Methods in de.bioforscher.singa.simulation.modules.model with parameters of type ConcentrationContainer

Modifier and Type	Method and Description
LocalError	AbstractSectionSpecificModule.determineDeltas(ConcentrationContainer concentrationContainer)
LocalError	AbstractNeighbourIndependentModule.determineDeltas(ConcentrationContainer concentrationContainer)
void	AbstractNeighbourDependentModule.determineFullDeltas(ConcentrationContainer concentrationContainer)

Method parameters in de.bioforscher.singa.simulation.modules.model with type arguments of type ConcentrationContainer

Modifier and Type	Method and Description
void	AbstractNeighbourDependentModule.addDeltaFunction(Function<ConcentrationContainer,Delta> deltaFunction)
void	AbstractNeighbourIndependentModule.addDeltaFunction(Function<ConcentrationContainer,Delta> deltaFunction, Predicate<ConcentrationContainer> predicate)
void	AbstractNeighbourIndependentModule.addDeltaFunction(Function<ConcentrationContainer,Delta> deltaFunction, Predicate<ConcentrationContainer> predicate)
void	AbstractSectionSpecificModule.addDeltaFunction(Function<ConcentrationContainer,List<Delta>> deltaFunction, Predicate<ConcentrationContainer> predicate)
void	AbstractSectionSpecificModule.addDeltaFunction(Function<ConcentrationContainer,List<Delta>> deltaFunction, Predicate<ConcentrationContainer> predicate)

Uses of ConcentrationContainer in de.bioforscher.singa.simulation.modules.reactions.implementations

Methods in de.bioforscher.singa.simulation.modules.reactions.implementations with parameters of type ConcentrationContainer

Modifier and Type	Method and Description
double	DynamicKineticLaw.calculateVelocity(ConcentrationContainer concentrationContainer)
double	NthOrderReaction.calculateVelocity(ConcentrationContainer concentrationContainer)
double	MichaelisMentenReaction.calculateVelocity(ConcentrationContainer concentrationContainer)
double	DynamicReaction.calculateVelocity(ConcentrationContainer concentrationContainer)
double	EquilibriumReaction.calculateVelocity(ConcentrationContainer concentrationContainer)

Uses of ConcentrationContainer in de.bioforscher.singa.simulation.modules.reactions.model

Methods in de.bioforscher.singa.simulation.modules.reactions.model with parameters of type ConcentrationContainer

Modifier and Type	Method and Description
List<Delta>	Reaction.calculateDeltas(ConcentrationContainer concentrationContainer)
double	KineticLaw.calculateVelocity(ConcentrationContainer concentrationContainer)
abstract double	Reaction.calculateVelocity(ConcentrationContainer concentrationContainer)
protected double	Reaction.determineConcentration(ConcentrationContainer concentrationContainer, ReactantRole role) Determines the concentration of reactants that influence the velocity of the reaction.