de.bioforscher.singa.simulation.model.compartments

Class EnclosedCompartment

java.lang.Object

de.bioforscher.singa.simulation.model.compartments.CellSection

de.bioforscher.singa.simulation.model.compartments.EnclosedCompartment

All Implemented Interfaces:

Nameable

public class EnclosedCompartment
extends CellSection

An EnclosedCompartment is a CellSection that is bordered or enclosed by a Membrane.

Author:

cl

Constructor Summary

Constructors

Constructor and Description
EnclosedCompartment(String identifier, String name) Creates a new EnclosedCompartment with the given identifier and name.

Method Summary

Modifier and Type	Method and Description
Membrane	generateMembrane() Tries to generate a Membrane around the contents of this compartment.
Membrane	getEnclosingMembrane()
void	setEnclosingMembrane(Membrane enclosingMembrane)

Methods inherited from class de.bioforscher.singa.simulation.model.compartments.CellSection

addNode, equals, getContent, getIdentifier, getName, hashCode, isSubsection, setContent, setSubsection, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

EnclosedCompartment

public EnclosedCompartment(String identifier,
                           String name)

Creates a new EnclosedCompartment with the given identifier and name.

Parameters:

identifier - The identifier (should be unique).

name - The qualified name.

Method Detail

generateMembrane

public Membrane generateMembrane()

Tries to generate a Membrane around the contents of this compartment. This methods looks for neighbours that are not part of this compartment and generates the membrane following this border.

Returns:

The generated membrane

getEnclosingMembrane

public Membrane getEnclosingMembrane()

setEnclosingMembrane

public void setEnclosingMembrane(Membrane enclosingMembrane)