de.bioforscher.singa.simulation.modules.reactions.implementations.kineticLaws.implementations

Class MichaelsMentenWithKM

java.lang.Object

de.bioforscher.singa.simulation.modules.reactions.implementations.kineticLaws.implementations.MichaelsMentenWithKM

All Implemented Interfaces:

KineticLaw

public final class MichaelsMentenWithKM
extends Object
implements KineticLaw

Author:

cl

Field Summary

Fields

Modifier and Type	Field and Description
static KineticParameterType	KM
static KineticParameterType	VMAX

Constructor Summary

Constructors

Constructor and Description
MichaelsMentenWithKM(ChemicalEntity substrate)
MichaelsMentenWithKM(ChemicalEntity substrate, EntityDependentKineticParameter<MolarConcentration> km, KineticParameter<ReactionRate> vMax)

Method Summary

Modifier and Type	Method and Description
javax.measure.Quantity<ReactionRate>	calculateAcceleration(BioNode node, CellSection section)
EntityDependentKineticParameter<MolarConcentration>	getKm()
List<KineticParameterType>	getRequiredParameters()
ChemicalEntity	getSubstrate()
KineticParameter<ReactionRate>	getVMax()
void	prepareAppliedRateConstants()
void	setKm(EntityDependentKineticParameter<MolarConcentration> km)
void	setSubstrate(ChemicalEntity substrate)
void	setVMax(KineticParameter<ReactionRate> vMax)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

KM

public static final KineticParameterType KM

VMAX

public static final KineticParameterType VMAX

Constructor Detail

MichaelsMentenWithKM

public MichaelsMentenWithKM(ChemicalEntity substrate)

MichaelsMentenWithKM

public MichaelsMentenWithKM(ChemicalEntity substrate,
                            EntityDependentKineticParameter<MolarConcentration> km,
                            KineticParameter<ReactionRate> vMax)

Method Detail

calculateAcceleration

public javax.measure.Quantity<ReactionRate> calculateAcceleration(BioNode node,
                                                                  CellSection section)

Specified by:

calculateAcceleration in interface KineticLaw

prepareAppliedRateConstants

public void prepareAppliedRateConstants()

Specified by:

prepareAppliedRateConstants in interface KineticLaw

getRequiredParameters

public List<KineticParameterType> getRequiredParameters()

Specified by:

getRequiredParameters in interface KineticLaw

getSubstrate

public ChemicalEntity getSubstrate()

setSubstrate

public void setSubstrate(ChemicalEntity substrate)

getKm

public EntityDependentKineticParameter<MolarConcentration> getKm()

setKm

public void setKm(EntityDependentKineticParameter<MolarConcentration> km)

getVMax

public KineticParameter<ReactionRate> getVMax()

setVMax

public void setVMax(KineticParameter<ReactionRate> vMax)