de.bioforscher.singa.simulation.modules.reactions.implementations.kineticLaws.implementations

Class DynamicKineticLaw

java.lang.Object

de.bioforscher.singa.simulation.modules.reactions.implementations.kineticLaws.implementations.DynamicKineticLaw

All Implemented Interfaces:

KineticLaw

public class DynamicKineticLaw
extends Object
implements KineticLaw

Author:

cl

Constructor Summary

Constructors

Constructor and Description
DynamicKineticLaw(AppliedExpression expression)

Method Summary

Modifier and Type	Method and Description
javax.measure.Quantity<ReactionRate>	calculateAcceleration(BioNode node, CellSection section)
double	getAppliedScale()
Map<ChemicalEntity,String>	getEntityReference()
AppliedExpression	getExpression()
List<KineticParameterType>	getRequiredParameters()
void	prepareAppliedRateConstants()
void	referenceChemicalEntityToParameter(String parameterIdentifier, ChemicalEntity entity)
void	setAppliedScale(double appliedScale)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DynamicKineticLaw

public DynamicKineticLaw(AppliedExpression expression)

Method Detail

getExpression

public AppliedExpression getExpression()

referenceChemicalEntityToParameter

public void referenceChemicalEntityToParameter(String parameterIdentifier,
                                               ChemicalEntity entity)

getEntityReference

public Map<ChemicalEntity,String> getEntityReference()

getAppliedScale

public double getAppliedScale()

setAppliedScale

public void setAppliedScale(double appliedScale)

calculateAcceleration

public javax.measure.Quantity<ReactionRate> calculateAcceleration(BioNode node,
                                                                  CellSection section)

Specified by:

calculateAcceleration in interface KineticLaw

prepareAppliedRateConstants

public void prepareAppliedRateConstants()

Specified by:

prepareAppliedRateConstants in interface KineticLaw

getRequiredParameters

public List<KineticParameterType> getRequiredParameters()

Specified by:

getRequiredParameters in interface KineticLaw