de.bioforscher.singa.simulation.modules.reactions.implementations

Class EquilibriumReaction

java.lang.Object

de.bioforscher.singa.simulation.modules.reactions.model.Reaction

de.bioforscher.singa.simulation.modules.reactions.implementations.EquilibriumReaction

public class EquilibriumReaction
extends Reaction

Author:

cl

Constructor Summary

Constructors

Constructor and Description
EquilibriumReaction(javax.measure.Quantity<ReactionRate> forwardsRateConstant, javax.measure.Quantity<ReactionRate> backwardsRateConstant)

Method Summary

Modifier and Type	Method and Description
javax.measure.Quantity<ReactionRate>	calculateAcceleration(BioNode node, CellSection section) Determines the actual acceleration of concentration that would result in a change in concentration if the reaction is occurring in the given BioNode.
Set<ChemicalEntity<?>>	collectAllReferencedEntities()
javax.measure.Quantity<ReactionRate>	getBackwardsRateConstant()
javax.measure.Quantity<ReactionRate>	getForwardsRateConstant()
void	prepareAppliedRateConstants()

Methods inherited from class de.bioforscher.singa.simulation.modules.reactions.model.Reaction

determineConcentration, getDisplayString, getProducts, getStoichiometricReactants, getSubstrates, isElementary, setElementary, setStoichiometricReactants

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EquilibriumReaction

public EquilibriumReaction(javax.measure.Quantity<ReactionRate> forwardsRateConstant,
                           javax.measure.Quantity<ReactionRate> backwardsRateConstant)

Method Detail

calculateAcceleration

public javax.measure.Quantity<ReactionRate> calculateAcceleration(BioNode node,
                                                                  CellSection section)

Description copied from class: Reaction

Determines the actual acceleration of concentration that would result in a change in concentration if the reaction is occurring in the given BioNode.

Specified by:

calculateAcceleration in class Reaction

Parameters:

node - The node containing the concentrations of species subject to this reaction.

section - The cell section.

Returns:

The acceleration of concentration (change in reaction rate for the species of this reaction)

collectAllReferencedEntities

public Set<ChemicalEntity<?>> collectAllReferencedEntities()

Specified by:

collectAllReferencedEntities in class Reaction

prepareAppliedRateConstants

public void prepareAppliedRateConstants()

getBackwardsRateConstant

public javax.measure.Quantity<ReactionRate> getBackwardsRateConstant()

getForwardsRateConstant

public javax.measure.Quantity<ReactionRate> getForwardsRateConstant()