de.bioforscher.singa.simulation.modules.model

Class Simulation

java.lang.Object

de.bioforscher.singa.simulation.modules.model.Simulation

All Implemented Interfaces:

UpdateEventEmitter<NodeUpdatedEvent>

public class Simulation
extends Object
implements UpdateEventEmitter<NodeUpdatedEvent>

Author:

cl

Constructor Summary

Constructors

Constructor and Description
Simulation()

Method Summary

Modifier and Type	Method and Description
void	applyAssignmentRules()
Set<ChemicalEntity<?>>	collectAllReferencedEntities()
List<AssignmentRule>	getAssignmentRules()
Set<ChemicalEntity<?>>	getChemicalEntities()
javax.measure.Quantity<javax.measure.quantity.Time>	getElapsedTime()
int	getEpoch()
FreeDiffusion	getFreeDiffusionModule()
AutomatonGraph	getGraph()
CopyOnWriteArrayList<UpdateEventListener<NodeUpdatedEvent>>	getListeners()
Set<Module>	getModules()
EpochUpdateWriter	getWriter()
void	nextEpoch()
void	setAssignmentRules(List<AssignmentRule> assignmentRules)
void	setChemicalEntities(Set<ChemicalEntity<?>> chemicalEntities)
void	setGraph(AutomatonGraph graph)
void	setModules(Set<Module> modules)
void	setWriter(EpochUpdateWriter writer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.core.events.UpdateEventEmitter

addEventListener, emitEvent, removeEventListener

Constructor Detail

Simulation

public Simulation()

Method Detail

collectAllReferencedEntities

public Set<ChemicalEntity<?>> collectAllReferencedEntities()

nextEpoch

public void nextEpoch()

applyAssignmentRules

public void applyAssignmentRules()

getGraph

public AutomatonGraph getGraph()

setGraph

public void setGraph(AutomatonGraph graph)

getModules

public Set<Module> getModules()

setModules

public void setModules(Set<Module> modules)

getAssignmentRules

public List<AssignmentRule> getAssignmentRules()

setAssignmentRules

public void setAssignmentRules(List<AssignmentRule> assignmentRules)

getChemicalEntities

public Set<ChemicalEntity<?>> getChemicalEntities()

setChemicalEntities

public void setChemicalEntities(Set<ChemicalEntity<?>> chemicalEntities)

getEpoch

public int getEpoch()

getElapsedTime

public javax.measure.Quantity<javax.measure.quantity.Time> getElapsedTime()

getWriter

public EpochUpdateWriter getWriter()

setWriter

public void setWriter(EpochUpdateWriter writer)

getListeners

public CopyOnWriteArrayList<UpdateEventListener<NodeUpdatedEvent>> getListeners()

Specified by:

getListeners in interface UpdateEventEmitter<NodeUpdatedEvent>

getFreeDiffusionModule

public FreeDiffusion getFreeDiffusionModule()