de.bioforscher.singa.simulation.modules.membranetransport

Class PassiveMembraneTransport

java.lang.Object

de.bioforscher.singa.simulation.modules.membranetransport.PassiveMembraneTransport

All Implemented Interfaces:

Module, CumulativeUpdateBehavior, UpdateBehavior

public class PassiveMembraneTransport
extends Object
implements Module, CumulativeUpdateBehavior

Author:

cl

Constructor Summary

Constructors

Constructor and Description
PassiveMembraneTransport()

Method Summary

Modifier and Type	Method and Description
void	applyTo(AutomatonGraph graph)
List<PotentialUpdate>	calculateUpdates(BioNode node)
Set<ChemicalEntity<?>>	collectAllReferencedEntities()
void	prepareCoefficients(Set<ChemicalEntity<?>> entities)
void	updateGraph(AutomatonGraph graph) Calculates all updates and applies them afterwards.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PassiveMembraneTransport

public PassiveMembraneTransport()

Method Detail

prepareCoefficients

public void prepareCoefficients(Set<ChemicalEntity<?>> entities)

applyTo

public void applyTo(AutomatonGraph graph)

Specified by:

applyTo in interface Module

updateGraph

public void updateGraph(AutomatonGraph graph)

Description copied from interface: CumulativeUpdateBehavior

Calculates all updates and applies them afterwards.

Specified by:

updateGraph in interface CumulativeUpdateBehavior

Specified by:

updateGraph in interface UpdateBehavior

Parameters:

graph - The graph.

collectAllReferencedEntities

public Set<ChemicalEntity<?>> collectAllReferencedEntities()

Specified by:

collectAllReferencedEntities in interface Module

calculateUpdates

public List<PotentialUpdate> calculateUpdates(BioNode node)

Specified by:

calculateUpdates in interface UpdateBehavior