de.bioforscher.singa.simulation.model.graphs

Class BioNode

java.lang.Object

de.bioforscher.singa.mathematics.graphs.model.AbstractNode<BioNode,Vector2D,Integer>

de.bioforscher.singa.simulation.model.graphs.BioNode

All Implemented Interfaces:

Node<BioNode,Vector2D,Integer>

public class BioNode
extends AbstractNode<BioNode,Vector2D,Integer>

Constructor Summary

Constructors

Constructor and Description
BioNode(int identifier)

Method Summary

Modifier and Type	Method and Description
Map<ChemicalEntity,javax.measure.Quantity<MolarConcentration>>	getAllConcentrations()
Set<ChemicalEntity>	getAllReferencedEntities()
Set<CellSection>	getAllReferencedSections()
javax.measure.Quantity<MolarConcentration>	getAvailableConcentration(ChemicalEntity entity, CellSection cellSection)
CellSection	getCellSection()
javax.measure.Quantity<MolarConcentration>	getConcentration(ChemicalEntity entity)
ConcentrationContainer	getConcentrations()
NodeState	getState()
boolean	isObserved()
void	setAvailableConcentration(ChemicalEntity entity, CellSection cellSection, javax.measure.Quantity<MolarConcentration> quantity)
void	setCellSection(CellSection cellSection)
void	setConcentration(ChemicalEntity entity, double value)
void	setConcentration(ChemicalEntity entity, javax.measure.Quantity<MolarConcentration> quantity)
void	setConcentrations(ConcentrationContainer concentrations)
void	setConcentrations(double concentration, ChemicalEntity... entities)
void	setObserved(boolean isObserved)
void	setState(NodeState state)
String	toString()

Methods inherited from class de.bioforscher.singa.mathematics.graphs.model.AbstractNode

addNeighbour, equals, getDegree, getIdentifier, getNeighbours, getPosition, hashCode, hasNeighbour, removeNeighbour, setIdentifier, setNeighbours, setPosition

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.bioforscher.singa.mathematics.graphs.model.Node

getCopy

Constructor Detail

BioNode

public BioNode(int identifier)

Method Detail

setConcentrations

public void setConcentrations(double concentration,
                              ChemicalEntity... entities)

setConcentration

public void setConcentration(ChemicalEntity entity,
                             javax.measure.Quantity<MolarConcentration> quantity)

setConcentration

public void setConcentration(ChemicalEntity entity,
                             double value)

getAllConcentrations

public Map<ChemicalEntity,javax.measure.Quantity<MolarConcentration>> getAllConcentrations()

getConcentration

public javax.measure.Quantity<MolarConcentration> getConcentration(ChemicalEntity entity)

setAvailableConcentration

public void setAvailableConcentration(ChemicalEntity entity,
                                      CellSection cellSection,
                                      javax.measure.Quantity<MolarConcentration> quantity)

getAvailableConcentration

public javax.measure.Quantity<MolarConcentration> getAvailableConcentration(ChemicalEntity entity,
                                                                            CellSection cellSection)

getAllReferencedSections

public Set<CellSection> getAllReferencedSections()

getAllReferencedEntities

public Set<ChemicalEntity> getAllReferencedEntities()

getState

public NodeState getState()

setState

public void setState(NodeState state)

isObserved

public boolean isObserved()

setObserved

public void setObserved(boolean isObserved)

getCellSection

public CellSection getCellSection()

setCellSection

public void setCellSection(CellSection cellSection)

getConcentrations

public ConcentrationContainer getConcentrations()

setConcentrations

public void setConcentrations(ConcentrationContainer concentrations)

toString

public String toString()

Overrides:

toString in class AbstractNode<BioNode,Vector2D,Integer>