Uses of Class
de.bioforscher.singa.sequence.model.ProteinSequence

Packages that use ProteinSequence

Package	Description
de.bioforscher.singa.sequence.algorithms.alignment
de.bioforscher.singa.sequence.model

Uses of ProteinSequence in de.bioforscher.singa.sequence.algorithms.alignment

Methods in de.bioforscher.singa.sequence.algorithms.alignment that return ProteinSequence

Modifier and Type	Method and Description
ProteinSequence	NeedlemanWunschAlignment.getAlignedFirstSequence()
ProteinSequence	NeedlemanWunschAlignment.getAlignedSecondSequence()
ProteinSequence	DynamicProgrammingGraph.getFirstSequence()
ProteinSequence	DynamicProgrammingGraph.getSecondSequence()

Constructors in de.bioforscher.singa.sequence.algorithms.alignment with parameters of type ProteinSequence

Constructor and Description
DynamicProgrammingGraph(ProteinSequence firstSequence, ProteinSequence secondSequence)
NeedlemanWunschAlignment(SubstitutionMatrix substitutionMatrix, ProteinSequence firstSequence, ProteinSequence secondSequence)

Uses of ProteinSequence in de.bioforscher.singa.sequence.model

Methods in de.bioforscher.singa.sequence.model that return ProteinSequence

Modifier and Type	Method and Description
static ProteinSequence	ProteinSequence.of(LeafSubstructureContainer leafSubstructureContainer)
static ProteinSequence	ProteinSequence.of(List<LeafSubstructure<?>> leafSubstructures)
static ProteinSequence	ProteinSequence.of(String sequence)