Uses of Interface
de.bioforscher.singa.core.identifier.model.Identifier

Packages that use Identifier

Package	Description
de.bioforscher.singa.core.identifier
de.bioforscher.singa.core.identifier.model

Uses of Identifier in de.bioforscher.singa.core.identifier

Classes in de.bioforscher.singa.core.identifier that implement Identifier

Modifier and Type	Class and Description
class	ChEBIIdentifier This identifier is used by the ChEBI Database to identify small molecules.
class	ECNumber This identifier is used to identify functional classes of enzymes.
class	InChIKey The IUPAC International Chemical Identifier is a textual identifier for chemical substances, designed to provide a standard way to encode molecular information and to facilitate the search for such information in databases and on the web.
class	NCBITaxonomyIdentifier This identifier is used by the NCBI to uniquely identify any organism on the NCBI Taxonomy Database.
class	PDBIdentifier This identifier is used by the Protein Database to identify structures.
class	PubChemIdentifier This identifier is used by the PubChem Database to identify small molecules.
class	SimpleStringIdentifier This identifier is just an encapsulated string.
class	UniProtIdentifier This identifier is used by the Uniprot Database to identify proteins.

Methods in de.bioforscher.singa.core.identifier that return types with arguments of type Identifier

Modifier and Type	Method and Description
static Optional<Identifier>	UniProtIdentifier.find(Collection<Identifier> identifiers) Searches a valid PubChem identifier in a collection of identifiers and returns it.
static Optional<Identifier>	PubChemIdentifier.find(Collection<Identifier> identifiers) Searches a valid PubChem identifier in a collection of identifiers and returns it.
static Optional<Identifier>	ChEBIIdentifier.find(Collection<Identifier> identifiers) Searches a valid PubChem identifier in a collection of identifiers and returns it.

Methods in de.bioforscher.singa.core.identifier with parameters of type Identifier

Modifier and Type	Method and Description
static boolean	UniProtIdentifier.check(Identifier identifier) Returns true, if the identifier is valid.
static boolean	SimpleStringIdentifier.check(Identifier identifier) Returns true, if the identifier is valid.
static boolean	PubChemIdentifier.check(Identifier identifier) Returns true, if the identifier is valid.
static boolean	NCBITaxonomyIdentifier.check(Identifier identifier) Returns true, if the identifier is valid.
static boolean	InChIKey.check(Identifier identifier) Returns true, if the identifier is valid.
static boolean	ECNumber.check(Identifier identifier) Returns true, if the identifier is valid.
static boolean	ChEBIIdentifier.check(Identifier identifier) Returns true, if the identifier is valid.

Method parameters in de.bioforscher.singa.core.identifier with type arguments of type Identifier

Modifier and Type	Method and Description
static Optional<Identifier>	UniProtIdentifier.find(Collection<Identifier> identifiers) Searches a valid PubChem identifier in a collection of identifiers and returns it.
static Optional<Identifier>	PubChemIdentifier.find(Collection<Identifier> identifiers) Searches a valid PubChem identifier in a collection of identifiers and returns it.
static Optional<Identifier>	ChEBIIdentifier.find(Collection<Identifier> identifiers) Searches a valid PubChem identifier in a collection of identifiers and returns it.

Uses of Identifier in de.bioforscher.singa.core.identifier.model

Classes in de.bioforscher.singa.core.identifier.model with type parameters of type Identifier

Modifier and Type	Interface and Description
interface	Identifiable<IdentifierType extends Identifier> The Identifiable interface specifies that, Objects implementing this interface can be identified by a certain Identifier.

Classes in de.bioforscher.singa.core.identifier.model that implement Identifier

Modifier and Type	Class and Description
class	AbstractIdentifier The most basic, abstract implementation of Identifier.